Csor.00g021800.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g021800.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr04: 3018090 .. 3019566 (-)
Sequence length	285
RNA-Seq Expression	Csor.00g021800.m01
Synteny	Csor.00g021800.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGGTCAGCGTACGAAAGGGAAACGGATAGGATCACATCAAGATGATGAGATGAGTCGGACGAGGCATTGGCTCGCAGGGAATGTGAAGGCGAAAATGGGACAGCCGGTCACACGCTTGGATGCATCCCATTCGCACGTGCCACTTCCCTCCTCTTCAGTCTCACTCCAGCGCCTCTCTGTCGAATATTCCACATGCTCGCCCTCACTCTCTCTCTCTCTCTCTAGAAGCAAGCTGCAAACTCAGCCTTTCGGTGATAGATAGATGCAGCCAAGGCTCTCACGGACCGACGATTTTCTCTCTATCTTGATACTGAGCTGCATTTCTTTCAATTGGATCTAACTTCCTCTTCGAGGTCCGTGCATGTTTTGCTTTTCAGTTTTCATCACTCGGTTTGCGTTTTTCCCCCGCTTTTTCGCCGGTTAAACCTGTAATTGTTGTGTAATCTGTGAGTTGTTTTGTTGTTTGGTGACTTTGAGATGTGTGTGAGATTTTGCCTTTTTGAATCAATTGGCGACTCTGATTGGATTGTGATTGTGATTGTGATTGTTGAATGTGCCTACACTTTTCGCGGTTTTGGTTCTGAAGTGTTGTGGAATGAAGTGTGAGATTTTGTGTCGTACTTGGAGGTTTTGGTTTTCGTTCTGTTTGCTTCTTGTTTGAGCAATTTTGAGTGAATGGTTGTAGTTCTGGTGCTATACTGCATCTATTGAATTCCATGATTCACGGCTTGCGAGGCCGAGGAAGAGTGGTTGCCTACTTCATAACAAAGTACTAATTTGTTGATTTTAACACTGACGCGTTTTGATATGTCCGGTTAGTCAGTCTATTGGTTTCATTCTATGTTTTCCATGAAGAAATTTTGAGTTTCTAACATCGAAGTTGGAACTTAATAGTTGTGTTTATGGGGAACGGCCGCTTGACTTTTCCTATTTCCTTTTACAAATTCCATTATATCGTTGTTTCTGGATTCCTCTCCATCTAATTAGTGGAAAGCCGTCTCTGTGAGTACTTCATCGGAAGTTTGGTGATGGCCTCTCAATTTTGCCACTATAGTGTTTCCCTGATGGAATGGGAGGTTTCGTGGCCCATCCATTGTTAGGCATTTGCTAATGAGCCATGTCGTGAATTGACATACATCAATATGTGAAAGTAGAGATGTTATCCTCTAGTTACTAATGTAGCTTTTCTATTATTGTTAAGTTGATCTAACCAGATTAAGAATAATTCCTTCTAGTTACTGATATTTATTCATTACATACATAGGGATATCGTTTCCATTATTGTTAAATTGATTTGTACTTTGTTCAAAACAACGTTTTTCCTTCTTCCTCTCTTTTTAGTCTATTTTTTATTTTTCCTTTTTCTTTTTAATAGCCTTCTGTCTATATATTTTTGTGTTTGTAACAGCTCATTTTTAACCAGAGTGCCATATGTCCGAGGAAACTATTGCCAAGCTTGTTCTGTCAGATGA

mRNA sequence

ATGCCAGGTCAGCGTACGAAAGGGAAACGGATAGGATCACATCAAGATGATGAGATGAGTCGGACGAGGCATTGGCTCGCAGGGAATGTGAAGGCGAAAATGGGACAGCCGGTCACACGCTTGGATGCATCCCATTCGCACATAGATGCAGCCAAGGCTCTCACGGACCGACGATTTTCTCTCTATCTTGATACTGAGCTGCATTTCTTTCAATTGGATCTAACTTCCTCTTCGAGAGTGCCATATGTCCGAGGAAACTATTGCCAAGCTTGTTCTGTCAGATGA

Coding sequence (CDS)

ATGCCAGGTCAGCGTACGAAAGGGAAACGGATAGGATCACATCAAGATGATGAGATGAGTCGGACGAGGCATTGGCTCGCAGGGAATGTGAAGGCGAAAATGGGACAGCCGGTCACACGCTTGGATGCATCCCATTCGCACATAGATGCAGCCAAGGCTCTCACGGACCGACGATTTTCTCTCTATCTTGATACTGAGCTGCATTTCTTTCAATTGGATCTAACTTCCTCTTCGAGAGTGCCATATGTCCGAGGAAACTATTGCCAAGCTTGTTCTGTCAGATGA

Protein sequence

MPGQRTKGKRIGSHQDDEMSRTRHWLAGNVKAKMGQPVTRLDASHSHIDAAKALTDRRFSLYLDTELHFFQLDLTSSSRVPYVRGNYCQACSVR

Homology

[Close]

BLAST of Csor.00g021800.m01 vs. NCBI nr
Match: KAG6600415.1 (hypothetical protein SDJN03_05648, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 196 bits (498), Expect = 3.11e-63
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MPGQRTKGKRIGSHQDDEMSRTRHWLAGNVKAKMGQPVTRLDASHSHIDAAKALTDRRFS 60
          MPGQRTKGKRIGSHQDDEMSRTRHWLAGNVKAKMGQPVTRLDASHSHIDAAKALTDRRFS
Sbjct: 1  MPGQRTKGKRIGSHQDDEMSRTRHWLAGNVKAKMGQPVTRLDASHSHIDAAKALTDRRFS 60

Query: 61 LYLDTELHFFQLDLTSSSRVPYVRGNYCQACSVR 94
          LYLDTELHFFQLDLTSSSRVPYVRGNYCQACSVR
Sbjct: 61 LYLDTELHFFQLDLTSSSRVPYVRGNYCQACSVR 94

The following BLAST results are available for this feature:

BLAST of Csor.00g021800.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g021800.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600415.1	3.11e-63	100.00	hypothetical protein SDJN03_05648, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g021800.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g021800.m01 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g021800	Csor.00g021800	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g021800.m01.CDS01	Csor.00g021800.m01.CDS01	CDS
Csor.00g021800.m01.CDS02	Csor.00g021800.m01.CDS02	CDS
Csor.00g021800.m01.CDS03	Csor.00g021800.m01.CDS03	CDS

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g021800.m01.stop_codon01	Csor.00g021800.m01.stop_codon01	stop_codon

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g021800.m01.terminal01	Csor.00g021800.m01.terminal01	terminal

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g021800.m01.intron01	Csor.00g021800.m01.intron01	intron
Csor.00g021800.m01.intron02	Csor.00g021800.m01.intron02	intron

The following internal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g021800.m01.internal01	Csor.00g021800.m01.internal01	internal

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g021800.m01.initial01	Csor.00g021800.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g021800.m01.start_codon01	Csor.00g021800.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g021800.m01	Csor.00g021800.m01-protein	polypeptide