Csor.00g017700.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g017700.m01
TypemRNA
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr05: 4427212 .. 4428339 (+)
Sequence length258
RNA-Seq ExpressionCsor.00g017700.m01
SyntenyCsor.00g017700.m01
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAGGCGAAGTGTCACGATCGTTCTCCTCCGCCTGATCGATACTATGACGCTCTCCATAAGACTCTTTTGTTCTTCGATGCTCACAAGTGTAAGTTCTTCGTTTTTAATTTCATAGAACATTTCCCTATTAAATAAAACTCACAAATGTCAATATCTTACTGTCGAAATTAAATATTGTTCTTAATAAATACGCAAATTTAAATTAACATTAAAAAATGATGAAACTTATTAAAACATAATTAAATTTATTACGCACTTTTGAAATTTAAATGCTTATAATTTTTTTAATTTAATTTAATTCTGAAAATTCATGGATTAAATTTCTAATTTAACTTTGTTTTTAATTTTAAATATTGATTTTTAAAACTATATACCTAACCTATGAGTTTTTTTTTTTTCTCTTAATATTATAATAATCTCATACCAGTTTCTTTTGTTGGATGATGGAAGTCCTAATTTAGGGTGTGATCATGGGTTTATAAGTGAGGAATACTAACTCCATTGGTGTGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGTTCGTCTAACACCTTTTCCTAACATTATTTTCAAATTTTGAGTTTTTAGAAATTAAGTTGAATGTTATATATATATATATATATTTTGTTTATGAAATATTATTAAATTTATTAGGACTAATTAATATATTACAAAATAAAATTTTATTTTTTTGGGTAAGTTGGATTAGGGAATTTTTTAGACCAACCCAAAAGTTTGGGTTGGTCGGATTGGTAACCCTAAACCCTAAACCCTACCAAACCTCTGTTTTCAGGTTGGGTTCAAGTTATTCCAAAAAATATTTTATTAAATTGAAAAATAGTTTATTTCACCTCTTCCGAGTTCTGAGACAACCAACTATCGAGTGTTGAAGACCACGAATTCTAGGAGACAAACTCAACCAAGTGTCAAGAACCACGAACTCTGCGAAACGAGACTCAACTGAATGCTGAAGACGACATCGATGAAATCGAAGCAATTGACTACCAAGTGCTAAAGACGAGAGTCGAGACTCAACCCAAGAACCAACTGGCCACTAAACTCAAGAACTGA

mRNA sequence

ATGTTGAGGCGAAGTGTCACGATCGTTCTCCTCCGCCTGATCGATACTATGACGCTCTCCATAAGACTCTTTTGTTCTTCGATGCTCACAAGTGAGACAAACTCAACCAAGTGTCAAGAACCACGAACTCTGCGAAACGAGACTCAACTGAATGCTGAAGACGACATCGATGAAATCGAAGCAATTGACTACCAAGTGCTAAAGACGAGAGTCGAGACTCAACCCAAGAACCAACTGGCCACTAAACTCAAGAACTGA

Coding sequence (CDS)

ATGTTGAGGCGAAGTGTCACGATCGTTCTCCTCCGCCTGATCGATACTATGACGCTCTCCATAAGACTCTTTTGTTCTTCGATGCTCACAAGTGAGACAAACTCAACCAAGTGTCAAGAACCACGAACTCTGCGAAACGAGACTCAACTGAATGCTGAAGACGACATCGATGAAATCGAAGCAATTGACTACCAAGTGCTAAAGACGAGAGTCGAGACTCAACCCAAGAACCAACTGGCCACTAAACTCAAGAACTGA

Protein sequence

MLRRSVTIVLLRLIDTMTLSIRLFCSSMLTSETNSTKCQEPRTLRNETQLNAEDDIDEIEAIDYQVLKTRVETQPKNQLATKLKN
Homology
[Close]
BLAST of Csor.00g017700.m01 vs. NCBI nr
Match: KAG6598925.1 (hypothetical protein SDJN03_08703, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 153 bits (387), Expect = 1.41e-46
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 

Query: 1  MLRRSVTIVLLRLIDTMTLSIRLFCSSMLTSETNSTKCQEPRTLRNETQLNAEDDIDEIE 60
          MLRRSVTIVLLRLIDTMTLSIRLFCSSMLTSETNSTKCQEPRTLRNETQLNAEDDIDEIE
Sbjct: 1  MLRRSVTIVLLRLIDTMTLSIRLFCSSMLTSETNSTKCQEPRTLRNETQLNAEDDIDEIE 60

Query: 61 AIDYQVLKTRVETQPKNQLATKLKN 85
          AIDYQVLKTRVETQPKNQLATKLKN
Sbjct: 61 AIDYQVLKTRVETQPKNQLATKLKN 85

The following BLAST results are available for this feature:
BLAST of Csor.00g017700.m01 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g017700.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6598925.11.41e-46100.00hypothetical protein SDJN03_08703, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g017700.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g017700.m01 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Csor.00g017700Csor.00g017700gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g017700.m01.CDS02Csor.00g017700.m01.CDS02CDS
Csor.00g017700.m01.CDS01Csor.00g017700.m01.CDS01CDS


The following initial feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g017700.m01.initial01Csor.00g017700.m01.initial01initial


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g017700.m01.start_codon01Csor.00g017700.m01.start_codon01start_codon


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g017700.m01.intron01Csor.00g017700.m01.intron01intron


The following terminal feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g017700.m01.terminal01Csor.00g017700.m01.terminal01terminal


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Csor.00g017700.m01.stop_codon01Csor.00g017700.m01.stop_codon01stop_codon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Csor.00g017700.m01Csor.00g017700.m01-proteinpolypeptide