Csor.00g017600.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g017600.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Ubiquitin carboxyl-terminal hydrolase 15
Location	Csor_Chr05: 4555305 .. 4555778 (-)
Sequence length	339
RNA-Seq Expression	Csor.00g017600.m01
Synteny	Csor.00g017600.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCCTTATGGGGTTCTATTTTCGCTCATTTTCCTGCTCTTTCTCGCCCATAACGCCATTGAAGCGACCTCAATCCACGTGAGTACTCAAAATCCGCTTCTCCAAAGAACCCACATCTCAAAAAATCGAAACCCCATTGGGTTCCGATTTCCCCCAAATCGATTGGTTCAATCCATTTTCCTGCTCTGATTCTGTGTGCTTCTTGTTTCTTAGGTTAATGACTCCGACCAAGAACCGATGATGGTTCCATTGATGGAGAAGATGGAAACGACGGCGATGGTGATAAACAGCGGCCGACGGCAGCTTAGGAGCTTCCAGATTTGTGCTCTCTGCACCTGCTGCGGCGGTGCCAGAGGAATGTGCGTTCCATCACCCTGTTGCTATGCTATAAACTGTAACATCCCTAATAGGCCATTTGGGTTTTGCTCTTTTACACCAAGGACCTGTAACTGCTTTGGCTGCCATATTTAA

mRNA sequence

ATGTCGCCTTATGGGGTTCTATTTTCGCTCATTTTCCTGCTCTTTCTCGCCCATAACGCCATTGAAGCGACCTCAATCCACGTTAATGACTCCGACCAAGAACCGATGATGGTTCCATTGATGGAGAAGATGGAAACGACGGCGATGGTGATAAACAGCGGCCGACGGCAGCTTAGGAGCTTCCAGATTTGTGCTCTCTGCACCTGCTGCGGCGGTGCCAGAGGAATGTGCGTTCCATCACCCTGTTGCTATGCTATAAACTGTAACATCCCTAATAGGCCATTTGGGTTTTGCTCTTTTACACCAAGGACCTGTAACTGCTTTGGCTGCCATATTTAA

Coding sequence (CDS)

ATGTCGCCTTATGGGGTTCTATTTTCGCTCATTTTCCTGCTCTTTCTCGCCCATAACGCCATTGAAGCGACCTCAATCCACGTTAATGACTCCGACCAAGAACCGATGATGGTTCCATTGATGGAGAAGATGGAAACGACGGCGATGGTGATAAACAGCGGCCGACGGCAGCTTAGGAGCTTCCAGATTTGTGCTCTCTGCACCTGCTGCGGCGGTGCCAGAGGAATGTGCGTTCCATCACCCTGTTGCTATGCTATAAACTGTAACATCCCTAATAGGCCATTTGGGTTTTGCTCTTTTACACCAAGGACCTGTAACTGCTTTGGCTGCCATATTTAA

Protein sequence

MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLMEKMETTAMVINSGRRQLRSFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI

Homology

[Close]

BLAST of Csor.00g017600.m01 vs. NCBI nr
Match: KAG6598934.1 (hypothetical protein SDJN03_08712, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236 bits (601), Expect = 2.24e-78
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLMEKMETTAMVINSGRRQLRS 60
           MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLMEKMETTAMVINSGRRQLRS
Sbjct: 1   MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLMEKMETTAMVINSGRRQLRS 60

Query: 61  FQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 112
           FQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI
Sbjct: 61  FQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 112

[Close]

BLAST of Csor.00g017600.m01 vs. NCBI nr
Match: KAG7029889.1 (hypothetical protein SDJN02_08232 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236 bits (601), Expect = 3.22e-78
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLMEKMETTAMVINSGRRQLRS 60
           MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLMEKMETTAMVINSGRRQLRS
Sbjct: 12  MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLMEKMETTAMVINSGRRQLRS 71

Query: 61  FQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 112
           FQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI
Sbjct: 72  FQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 123

[Close]

BLAST of Csor.00g017600.m01 vs. NCBI nr
Match: XP_023546744.1 (uncharacterized protein LOC111805758 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233 bits (593), Expect = 5.35e-77
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLMEKMETTAMVINSGRRQLRS 60
           MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLMEKMETTAMVIN GRRQLRS
Sbjct: 12  MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLMEKMETTAMVINGGRRQLRS 71

Query: 61  FQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 112
           FQICALCTCCGGARG+CVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI
Sbjct: 72  FQICALCTCCGGARGVCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 123

[Close]

BLAST of Csor.00g017600.m01 vs. NCBI nr
Match: KGN61259.1 (hypothetical protein Csa_005922 [Cucumis sativus])

HSP 1 Score: 204 bits (518), Expect = 1.07e-65
Identity = 97/113 (85.84%), Postives = 104/113 (92.04%), Query Frame = 0


Query: 1   MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLMEKMETTAMVINSG-RRQLR 60
           MS YGVLFS I LLFLA NAIE TSIHVN+SDQEP+MVPLME   TTAM++NSG RRQL+
Sbjct: 1   MSSYGVLFSFILLLFLAQNAIEGTSIHVNESDQEPIMVPLMETTTTTAMMMNSGGRRQLK 60

Query: 61  SFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 112
           SFQICALCTCCGGARGMC+PSPCCYAINCNIPNRPFGFCSFTP+TCNCFGCHI
Sbjct: 61  SFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 113

[Close]

BLAST of Csor.00g017600.m01 vs. NCBI nr
Match: XP_022965498.1 (uncharacterized protein LOC111465383 [Cucurbita maxima])

HSP 1 Score: 197 bits (502), Expect = 3.03e-63
Identity = 95/114 (83.33%), Postives = 104/114 (91.23%), Query Frame = 0


Query: 1   MSPYGVLFSLIFLLFLAHNAIEATSIHVND-SDQEPMMVPLMEKMET-TAMVINSGRRQL 60
           MSPYGV+F LIF+LFLAH+AIEATS H N  SDQEPMMVPLME +ET TA+ +N  RRQL
Sbjct: 1   MSPYGVVFRLIFVLFLAHDAIEATSNHGNRWSDQEPMMVPLMENVETMTAVAMNGNRRQL 60

Query: 61  RSFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 112
           RSFQ+CALCTCCGGARGMC+PSPCCYAINCNIPNRPFGFCSFTP+TCNCFGCHI
Sbjct: 61  RSFQVCALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 114

[Close]

BLAST of Csor.00g017600.m01 vs. ExPASy TrEMBL
Match: A0A0A0LJJ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074210 PE=4 SV=1)

HSP 1 Score: 204 bits (518), Expect = 5.16e-66
Identity = 97/113 (85.84%), Postives = 104/113 (92.04%), Query Frame = 0


Query: 1   MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLMEKMETTAMVINSG-RRQLR 60
           MS YGVLFS I LLFLA NAIE TSIHVN+SDQEP+MVPLME   TTAM++NSG RRQL+
Sbjct: 1   MSSYGVLFSFILLLFLAQNAIEGTSIHVNESDQEPIMVPLMETTTTTAMMMNSGGRRQLK 60

Query: 61  SFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 112
           SFQICALCTCCGGARGMC+PSPCCYAINCNIPNRPFGFCSFTP+TCNCFGCHI
Sbjct: 61  SFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 113

[Close]

BLAST of Csor.00g017600.m01 vs. ExPASy TrEMBL
Match: A0A6J1HP40 (uncharacterized protein LOC111465383 OS=Cucurbita maxima OX=3661 GN=LOC111465383 PE=4 SV=1)

HSP 1 Score: 197 bits (502), Expect = 1.47e-63
Identity = 95/114 (83.33%), Postives = 104/114 (91.23%), Query Frame = 0


Query: 1   MSPYGVLFSLIFLLFLAHNAIEATSIHVND-SDQEPMMVPLMEKMET-TAMVINSGRRQL 60
           MSPYGV+F LIF+LFLAH+AIEATS H N  SDQEPMMVPLME +ET TA+ +N  RRQL
Sbjct: 1   MSPYGVVFRLIFVLFLAHDAIEATSNHGNRWSDQEPMMVPLMENVETMTAVAMNGNRRQL 60

Query: 61  RSFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 112
           RSFQ+CALCTCCGGARGMC+PSPCCYAINCNIPNRPFGFCSFTP+TCNCFGCHI
Sbjct: 61  RSFQVCALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 114

[Close]

BLAST of Csor.00g017600.m01 vs. ExPASy TrEMBL
Match: A0A5D3C6S7 (Ubiquitin carboxyl-terminal hydrolase 15 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00010 PE=4 SV=1)

HSP 1 Score: 195 bits (496), Expect = 1.13e-62
Identity = 96/113 (84.96%), Postives = 103/113 (91.15%), Query Frame = 0


Query: 1   MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLMEKMETTAMVINSG-RRQLR 60
           MS YGVLFS IFLL LA NAIE TSI VN+SDQEP+MVPLME   TTAM++NSG RRQL+
Sbjct: 1   MSSYGVLFSFIFLLILAQNAIEGTSILVNESDQEPIMVPLMETT-TTAMMMNSGGRRQLK 60

Query: 61  SFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 112
           SFQICALCTCCGGARGMC+PSPCCYAINCNIPNRPFGFCSFTP+TCNCFGCHI
Sbjct: 61  SFQICALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 112

[Close]

BLAST of Csor.00g017600.m01 vs. ExPASy TrEMBL
Match: A0A6J1D9H7 (uncharacterized protein LOC111018147 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018147 PE=4 SV=1)

HSP 1 Score: 194 bits (494), Expect = 2.52e-62
Identity = 95/115 (82.61%), Postives = 105/115 (91.30%), Query Frame = 0


Query: 1   MSPYGVLFSLIFLLFLAHNAIEATSIHVNDSDQEPMMVPLM---EKMETTAMVINSGRRQ 60
           M  +GV FSLIF+LFLA NAIEATSI+VN SDQEPMMVPLM   EKMET A+V++ GRR+
Sbjct: 2   MPSHGVAFSLIFVLFLAQNAIEATSIYVNVSDQEPMMVPLMGLGEKMET-AVVMSGGRRR 61

Query: 61  LRSFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 112
           LRSFQ+CALCTCCGGARGMC+PSPCCYAINCNIPNRPFGFCSFTP+TCNCFGCHI
Sbjct: 62  LRSFQVCALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 115

[Close]

BLAST of Csor.00g017600.m01 vs. ExPASy TrEMBL
Match: A0A6J1FHK2 (uncharacterized protein LOC111444031 OS=Cucurbita moschata OX=3662 GN=LOC111444031 PE=4 SV=1)

HSP 1 Score: 189 bits (481), Expect = 2.34e-60
Identity = 92/114 (80.70%), Postives = 101/114 (88.60%), Query Frame = 0


Query: 1   MSPYGVLFSLIFLLFLAHNAIEATSIHVND-SDQEPMMVPLMEKMET-TAMVINSGRRQL 60
           M  YGV+F LIF+LFLAH+AIEATS H N   DQEPMMVPLME +ET TA+ +N  RRQL
Sbjct: 1   MLRYGVVFRLIFVLFLAHDAIEATSNHGNRWFDQEPMMVPLMENVETMTAVAMNGNRRQL 60

Query: 61  RSFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 112
           RSFQ+CALCTCCGGARGMC+PSPCCYAINCNIPNRPFGFCSFTP+TCNCFGCHI
Sbjct: 61  RSFQVCALCTCCGGARGMCLPSPCCYAINCNIPNRPFGFCSFTPKTCNCFGCHI 114

[Close]

BLAST of Csor.00g017600.m01 vs. TAIR 10
Match: AT1G65295.1 (unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G01015.1); Has 90 Blast hits to 90 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 143.7 bits (361), Expect = 9.2e-35
Identity = 67/109 (61.47%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 9   SLIFLLFLAHNAIEATSIHVN-----DSDQEPMMVPLMEKMETTAMVINSGRRQLRSFQI 68
           S++FLL L  +   ++S   N     + D E MMVPL E+     MV+N  RR+L SFQI
Sbjct: 10  SIVFLLLLLFSIFISSSHQANEVLPAEGDNEMMMVPLGEE---KFMVMNETRRKLGSFQI 69

Query: 69  CALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 113
           C++CTCCGGA+G+C+PSPCCYAINCNIPNRPFG+CSFTP+TCNCFGCHI
Sbjct: 70  CSVCTCCGGAKGLCLPSPCCYAINCNIPNRPFGYCSFTPKTCNCFGCHI 115

[Close]

BLAST of Csor.00g017600.m01 vs. TAIR 10
Match: AT5G01015.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G65295.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 3.2e-11
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 55  RRQLRSFQICALCTCCGGARGMCVPSPCCYAINCNIPNRPFGFCSFTPRTCNCFGCHI 113
           R+ +   ++C  C CC      C   PCC+ INC +PN+PFG C+F P++C+C  C I
Sbjct: 49  RKLMTPLELCLECKCCSST--TCATMPCCFGINCQLPNKPFGVCAFVPKSCHCNSCSI 104

The following BLAST results are available for this feature:

BLAST of Csor.00g017600.m01 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g017600.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598934.1	2.24e-78	100.00	hypothetical protein SDJN03_08712, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7029889.1	3.22e-78	100.00	hypothetical protein SDJN02_08232 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023546744.1	5.35e-77	98.21	uncharacterized protein LOC111805758 [Cucurbita pepo subsp. pepo]	[more]
KGN61259.1	1.07e-65	85.84	hypothetical protein Csa_005922 [Cucumis sativus]	[more]
XP_022965498.1	3.03e-63	83.33	uncharacterized protein LOC111465383 [Cucurbita maxima]	[more]

BLAST of Csor.00g017600.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJJ1	5.16e-66	85.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G074210 PE=4 SV=1	[more]
A0A6J1HP40	1.47e-63	83.33	uncharacterized protein LOC111465383 OS=Cucurbita maxima OX=3661 GN=LOC111465383...	[more]
A0A5D3C6S7	1.13e-62	84.96	Ubiquitin carboxyl-terminal hydrolase 15 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1D9H7	2.52e-62	82.61	uncharacterized protein LOC111018147 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1FHK2	2.34e-60	80.70	uncharacterized protein LOC111444031 OS=Cucurbita moschata OX=3662 GN=LOC1114440...	[more]

BLAST of Csor.00g017600.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G65295.1	9.2e-35	61.47	unknown protein; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structu...	[more]
AT5G01015.1	3.2e-11	41.38	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33786	FAMILY NOT NAMED	coord: 2..112
None	No IPR available	PANTHER	PTHR33786:SF2	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	coord: 2..112

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g017600	Csor.00g017600	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g017600.m01.CDS02	Csor.00g017600.m01.CDS02	CDS
Csor.00g017600.m01.CDS01	Csor.00g017600.m01.CDS01	CDS

The following terminal feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g017600.m01.terminal01	Csor.00g017600.m01.terminal01	terminal

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g017600.m01.stop_codon01	Csor.00g017600.m01.stop_codon01	stop_codon

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g017600.m01.intron01	Csor.00g017600.m01.intron01	intron

The following initial feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g017600.m01.initial01	Csor.00g017600.m01.initial01	initial

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g017600.m01.start_codon01	Csor.00g017600.m01.start_codon01	start_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g017600.m01	Csor.00g017600.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity