Csor.00g016270.m01 (mRNA) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g016270.m01
Type	mRNA
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RING-type E3 ubiquitin transferase
Location	Csor_Chr13: 731660 .. 732148 (+)
Sequence length	489
RNA-Seq Expression	Csor.00g016270.m01
Synteny	Csor.00g016270.m01

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCCCAATATGTCCCACGAGCTGATGGGTGTCATAGTATTGAGTGCCATTGCTATCATTGTGTTCTTGTCGATCTTCATGTTTCGTTGCTATCACAACCACCTCATGCAGTATCAAACTAGAGCCCTCGATGTTGAGCAAACAAACCATGCAACGCGACTCTTCGCTCGTTTTCGGGCCGAGTTTATGCGGCAACAGCAGTCGATAGTAGCACCGCCTCCTCGATCGAACACGGCGGAGGAAGAAGCCGCCTCCATTGTCACGAAGGTCGCTTACAAAGACATCAAGACGACGGAGGAAGCCGATTCCGACGACTGTTGCGCCATCTGCATTGAAGGGTTTCAAGAGGAAGAGATTTGTGGAGTTCTTGATCGTTGTGGTCATTGTTTCCATAAGGTTTGTATCGATCAGTGGTTGGGGATCGAGAGTCGTTGCCCTCTGTGTCGCTGTTTGGTTCGTGTTGTATCGGAGAATAATAATTCGTAA

mRNA sequence

ATGAGTCCCAATATGTCCCACGAGCTGATGGGTGTCATAGTATTGAGTGCCATTGCTATCATTGTGTTCTTGTCGATCTTCATGTTTCGTTGCTATCACAACCACCTCATGCAGTATCAAACTAGAGCCCTCGATGTTGAGCAAACAAACCATGCAACGCGACTCTTCGCTCGTTTTCGGGCCGAGTTTATGCGGCAACAGCAGTCGATAGTAGCACCGCCTCCTCGATCGAACACGGCGGAGGAAGAAGCCGCCTCCATTGTCACGAAGGTCGCTTACAAAGACATCAAGACGACGGAGGAAGCCGATTCCGACGACTGTTGCGCCATCTGCATTGAAGGGTTTCAAGAGGAAGAGATTTGTGGAGTTCTTGATCGTTGTGGTCATTGTTTCCATAAGGTTTGTATCGATCAGTGGTTGGGGATCGAGAGTCGTTGCCCTCTGTGTCGCTGTTTGGTTCGTGTTGTATCGGAGAATAATAATTCGTAA

Coding sequence (CDS)

ATGAGTCCCAATATGTCCCACGAGCTGATGGGTGTCATAGTATTGAGTGCCATTGCTATCATTGTGTTCTTGTCGATCTTCATGTTTCGTTGCTATCACAACCACCTCATGCAGTATCAAACTAGAGCCCTCGATGTTGAGCAAACAAACCATGCAACGCGACTCTTCGCTCGTTTTCGGGCCGAGTTTATGCGGCAACAGCAGTCGATAGTAGCACCGCCTCCTCGATCGAACACGGCGGAGGAAGAAGCCGCCTCCATTGTCACGAAGGTCGCTTACAAAGACATCAAGACGACGGAGGAAGCCGATTCCGACGACTGTTGCGCCATCTGCATTGAAGGGTTTCAAGAGGAAGAGATTTGTGGAGTTCTTGATCGTTGTGGTCATTGTTTCCATAAGGTTTGTATCGATCAGTGGTTGGGGATCGAGAGTCGTTGCCCTCTGTGTCGCTGTTTGGTTCGTGTTGTATCGGAGAATAATAATTCGTAA

Protein sequence

MSPNMSHELMGVIVLSAIAIIVFLSIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFMRQQQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEICGVLDRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSENNNS

Homology

[Close]

BLAST of Csor.00g016270.m01 vs. ExPASy Swiss-Prot
Match: Q9SRM0 (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.6e-11
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 100 EEADSDDCCAICIEGFQEEEICGVLDRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSEN 159
           EE +  +CC IC+ GF+E E   VL  C HC+H  C+D+WL  ES CPLCR  +RV S +
Sbjct: 100 EEEEEKECC-ICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158

[Close]

BLAST of Csor.00g016270.m01 vs. ExPASy Swiss-Prot
Match: Q9M0C3 (RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-09
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 93  YKDIKTTEEADSDDCCAICIEGFQEEEICGVLDRCGHCFHKVCIDQWLGIESRCPLCR 151
           +K  + + E   DD C +CI+GF++ + C  L RCGH FH+ C+D WL   S CP+CR
Sbjct: 101 FKYCEPSSEYGGDD-CVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICR 157

[Close]

BLAST of Csor.00g016270.m01 vs. ExPASy Swiss-Prot
Match: O22255 (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-09
Identity = 42/148 (28.38%), Postives = 69/148 (46.62%), Query Frame = 0


Query: 7   HELMGVIVLSAIAIIVFLSIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFMRQ 66
           + L G I+LS++ I++F+++ M  C+H++      R        H  R+  R R+     
Sbjct: 22  YALNGKIMLSSV-IVLFVAVIMILCFHSYARWLFRR--------HNRRIRRRIRSHLRTL 81

Query: 67  QQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEICGVLDR 126
             S     PR    ++     +    Y   K     +  + C++C+  F+EE+   +L +
Sbjct: 82  SAS-----PRDQALDQAVLDKIPIFVYSS-KNPPPPEEKEECSVCLSEFEEEDEGRLLPK 141

Query: 127 CGHCFHKVCIDQWLGIESRCPLCRCLVR 155
           CGH FH  CID W    S CPLCR  V+
Sbjct: 142 CGHSFHVDCIDTWFRSRSTCPLCRAPVQ 154

[Close]

BLAST of Csor.00g016270.m01 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.3e-09
Identity = 29/60 (48.33%), Postives = 34/60 (56.67%), Query Frame = 0


Query: 97  KTTEEADSDDC-CAICIEGFQEEEICGVLDRCGHCFHKVCIDQWLGIESRCPLCRCLVRV 156
           K  EE D D   CA+C+   ++ E    L RCGH FH  C+D WLG  S CPLCR  V V
Sbjct: 122 KEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 181

[Close]

BLAST of Csor.00g016270.m01 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.6e-08
Identity = 31/83 (37.35%), Postives = 42/83 (50.60%), Query Frame = 0


Query: 93  YKDIKTTEEADSDDCCAICIEGFQEEEICGVLDRCGHCFHKVCIDQWLGIESRCPLCRCL 152
           YK  K     +S D C++C+  FQE E   +L +C H FH  CID WL   S CPLCR  
Sbjct: 145 YKYRKMDGFVESSD-CSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAF 204

Query: 153 V--------------RVVSENNN 162
           +              ++V+ENN+
Sbjct: 205 IVTSSAVEIVDLTNQQIVTENNS 226

[Close]

BLAST of Csor.00g016270.m01 vs. NCBI nr
Match: KAG6583431.1 (RING-H2 finger protein ATL5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 324 bits (831), Expect = 7.87e-112
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MSPNMSHELMGVIVLSAIAIIVFLSIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFR 60
           MSPNMSHELMGVIVLSAIAIIVFLSIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFR
Sbjct: 1   MSPNMSHELMGVIVLSAIAIIVFLSIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFR 60

Query: 61  AEFMRQQQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEI 120
           AEFMRQQQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEI
Sbjct: 61  AEFMRQQQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEI 120

Query: 121 CGVLDRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSENNNS 162
           CGVLDRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSENNNS
Sbjct: 121 CGVLDRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSENNNS 162

[Close]

BLAST of Csor.00g016270.m01 vs. NCBI nr
Match: KAG7019192.1 (E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320 bits (821), Expect = 5.28e-108
Identity = 159/162 (98.15%), Postives = 161/162 (99.38%), Query Frame = 0


Query: 1   MSPNMSHELMGVIVLSAIAIIVFLSIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFR 60
           MSPNMSHELMG+IVLSAIAI VFLSIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFR
Sbjct: 155 MSPNMSHELMGLIVLSAIAITVFLSIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFR 214

Query: 61  AEFMRQQQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEI 120
           AEFMRQQQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEE+
Sbjct: 215 AEFMRQQQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEL 274

Query: 121 CGVLDRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSENNNS 162
           CGVLDRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSENNNS
Sbjct: 275 CGVLDRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSENNNS 316

[Close]

BLAST of Csor.00g016270.m01 vs. NCBI nr
Match: XP_022964751.1 (RING-H2 finger protein ATL64-like [Cucurbita moschata])

HSP 1 Score: 294 bits (753), Expect = 5.38e-100
Identity = 147/158 (93.04%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 5   MSHELMGVIVLSAIAIIVFLSIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM 64
           MSHELMG+IVLSAIAIIVFL IFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM
Sbjct: 1   MSHELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM 60

Query: 65  RQQQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEICGVL 124
           +QQQSI APPPRSNTAEEEAASIVTKVAY+DIKTTEEAD DD CAICIEGF+EEEICGVL
Sbjct: 61  QQQQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVL 120

Query: 125 DRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSENNNS 162
           DRCGHCFHKVCIDQWL I SRCPLCRCL+RVVSENNNS
Sbjct: 121 DRCGHCFHKVCIDQWLRIGSRCPLCRCLIRVVSENNNS 158

[Close]

BLAST of Csor.00g016270.m01 vs. NCBI nr
Match: XP_023520574.1 (RING-H2 finger protein ATL64-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292 bits (748), Expect = 3.57e-99
Identity = 145/162 (89.51%), Postives = 151/162 (93.21%), Query Frame = 0


Query: 1   MSPNMSHELMGVIVLSAIAIIVFLSIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFR 60
           MSPNMSHELMG+IVLSAIAIIVFL IFMFRCYHN  MQ QTRALDVEQ NHATRLFARFR
Sbjct: 1   MSPNMSHELMGLIVLSAIAIIVFLPIFMFRCYHNRFMQNQTRALDVEQPNHATRLFARFR 60

Query: 61  AEFMRQQQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEI 120
           AE MR+Q SI   PPR NTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGF+E+EI
Sbjct: 61  AEVMRRQSSIATTPPRPNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFEEDEI 120

Query: 121 CGVLDRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSENNNS 162
           CGVLDRCGHCFHK+CIDQWLGI+SRCPLCRCLVRVVSENNNS
Sbjct: 121 CGVLDRCGHCFHKICIDQWLGIKSRCPLCRCLVRVVSENNNS 162

[Close]

BLAST of Csor.00g016270.m01 vs. NCBI nr
Match: XP_022970384.1 (RING-H2 finger protein ATL64-like [Cucurbita maxima])

HSP 1 Score: 276 bits (707), Expect = 5.54e-93
Identity = 137/158 (86.71%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 5   MSHELMGVIVLSAIAIIVFLSIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM 64
           MSH+LMG++VL AIAIIVFL IFMFRCYHN  M YQTRALDVEQTNHATRLFARFRAE M
Sbjct: 1   MSHQLMGLMVLGAIAIIVFLPIFMFRCYHNRFMLYQTRALDVEQTNHATRLFARFRAEVM 60

Query: 65  RQQQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEICGVL 124
           RQQQSI  PPPR NTAEEEAASIVTKVAY+DIK T+EADSDDCCAICIEGF+EEEICGV+
Sbjct: 61  RQQQSIAVPPPRPNTAEEEAASIVTKVAYRDIKPTKEADSDDCCAICIEGFEEEEICGVV 120

Query: 125 DRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSENNNS 162
           D C HCFHKVCID+WLGI SRCPLCRCLVRVVSENNNS
Sbjct: 121 DGCDHCFHKVCIDKWLGIVSRCPLCRCLVRVVSENNNS 158

[Close]

BLAST of Csor.00g016270.m01 vs. ExPASy TrEMBL
Match: A0A6J1HJU0 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742 PE=3 SV=1)

HSP 1 Score: 294 bits (753), Expect = 2.61e-100
Identity = 147/158 (93.04%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 5   MSHELMGVIVLSAIAIIVFLSIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM 64
           MSHELMG+IVLSAIAIIVFL IFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM
Sbjct: 1   MSHELMGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM 60

Query: 65  RQQQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEICGVL 124
           +QQQSI APPPRSNTAEEEAASIVTKVAY+DIKTTEEAD DD CAICIEGF+EEEICGVL
Sbjct: 61  QQQQSIAAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVL 120

Query: 125 DRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSENNNS 162
           DRCGHCFHKVCIDQWL I SRCPLCRCL+RVVSENNNS
Sbjct: 121 DRCGHCFHKVCIDQWLRIGSRCPLCRCLIRVVSENNNS 158

[Close]

BLAST of Csor.00g016270.m01 vs. ExPASy TrEMBL
Match: A0A6J1I5C3 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469386 PE=3 SV=1)

HSP 1 Score: 276 bits (707), Expect = 2.68e-93
Identity = 137/158 (86.71%), Postives = 145/158 (91.77%), Query Frame = 0


Query: 5   MSHELMGVIVLSAIAIIVFLSIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFM 64
           MSH+LMG++VL AIAIIVFL IFMFRCYHN  M YQTRALDVEQTNHATRLFARFRAE M
Sbjct: 1   MSHQLMGLMVLGAIAIIVFLPIFMFRCYHNRFMLYQTRALDVEQTNHATRLFARFRAEVM 60

Query: 65  RQQQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEICGVL 124
           RQQQSI  PPPR NTAEEEAASIVTKVAY+DIK T+EADSDDCCAICIEGF+EEEICGV+
Sbjct: 61  RQQQSIAVPPPRPNTAEEEAASIVTKVAYRDIKPTKEADSDDCCAICIEGFEEEEICGVV 120

Query: 125 DRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSENNNS 162
           D C HCFHKVCID+WLGI SRCPLCRCLVRVVSENNNS
Sbjct: 121 DGCDHCFHKVCIDKWLGIVSRCPLCRCLVRVVSENNNS 158

[Close]

BLAST of Csor.00g016270.m01 vs. ExPASy TrEMBL
Match: A0A5D3BE50 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002270 PE=3 SV=1)

HSP 1 Score: 139 bits (350), Expect = 4.09e-39
Identity = 80/152 (52.63%), Postives = 99/152 (65.13%), Query Frame = 0


Query: 10  MGVIVLSAIAIIVFLSIFMFRCYHNHLMQYQTRALDVEQTNHATR---LFARFRAEFMRQ 69
           MG + +S + II  L IF+F  YH  L   QTR LD+EQ  H  R   L A+ +AE +RQ
Sbjct: 1   MGFLFVSVVCII--LIIFLFHIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEIIRQ 60

Query: 70  QQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEICGVLDR 129
           +Q+         T  EE +S V KVAYK +K  E   S  CCAICIE F++EEICGV++ 
Sbjct: 61  RQTTT--QSNDTTEGEETSSAVMKVAYK-VKDNEAGGSYCCCAICIEEFEDEEICGVVES 120

Query: 130 CGHCFHKVCIDQWLGIESRCPLCRCLVRVVSE 158
           CGHCFH+ C+DQWL IESRCPLCRCLV  VS+
Sbjct: 121 CGHCFHEDCMDQWLRIESRCPLCRCLVHAVSQ 147

[Close]

BLAST of Csor.00g016270.m01 vs. ExPASy TrEMBL
Match: A0A5A7VMH1 (RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00560 PE=4 SV=1)

HSP 1 Score: 137 bits (344), Expect = 3.32e-38
Identity = 79/152 (51.97%), Postives = 98/152 (64.47%), Query Frame = 0


Query: 10  MGVIVLSAIAIIVFLSIFMFRCYHNHLMQYQTRALDVEQTNHATR---LFARFRAEFMRQ 69
           MG + +S + II  L IF+F  YH  L   QTR LD+EQ  H  R   L A+ +AE +RQ
Sbjct: 1   MGFLFVSVVCII--LIIFLFHIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEIIRQ 60

Query: 70  QQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEICGVLDR 129
           +Q+         T  EE +S V  VAYK +K  E   S  CCAICIE F++EEICGV++ 
Sbjct: 61  RQTTT--QSNDTTEGEETSSAVMTVAYK-VKDNEAGGSYCCCAICIEEFEDEEICGVVES 120

Query: 130 CGHCFHKVCIDQWLGIESRCPLCRCLVRVVSE 158
           CGHCFH+ C+DQWL IESRCPLCRCLV  VS+
Sbjct: 121 CGHCFHEDCMDQWLRIESRCPLCRCLVHAVSQ 147

[Close]

BLAST of Csor.00g016270.m01 vs. ExPASy TrEMBL
Match: A0A1S4E1K2 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC107991538 PE=3 SV=1)

HSP 1 Score: 116 bits (291), Expect = 9.54e-31
Identity = 59/104 (56.73%), Postives = 73/104 (70.19%), Query Frame = 0


Query: 55  LFARFRAEFMRQQQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEG 114
           L A+ +AE +RQ+Q+         T  EE +S V KVAYK +K  E   S  CCAICIE 
Sbjct: 3   LLAQTQAEIIRQRQTTT--QSNDTTEGEETSSAVMKVAYK-VKDNEAGGSYCCCAICIEE 62

Query: 115 FQEEEICGVLDRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSE 158
           F++EEICGV++ CGHCFH+ C+DQWL IESRCPLCRCLV  VS+
Sbjct: 63  FEDEEICGVVESCGHCFHEDCMDQWLRIESRCPLCRCLVHAVSQ 103

[Close]

BLAST of Csor.00g016270.m01 vs. TAIR 10
Match: AT3G11110.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 5.4e-12
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 100 EEADSDDCCAICIEGFQEEEICGVLDRCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSEN 159
           EE +  +CC IC+ GF+E E   VL  C HC+H  C+D+WL  ES CPLCR  +RV S +
Sbjct: 100 EEEEEKECC-ICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158

[Close]

BLAST of Csor.00g016270.m01 vs. TAIR 10
Match: AT2G47560.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-10
Identity = 42/148 (28.38%), Postives = 69/148 (46.62%), Query Frame = 0


Query: 7   HELMGVIVLSAIAIIVFLSIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFMRQ 66
           + L G I+LS++ I++F+++ M  C+H++      R        H  R+  R R+     
Sbjct: 22  YALNGKIMLSSV-IVLFVAVIMILCFHSYARWLFRR--------HNRRIRRRIRSHLRTL 81

Query: 67  QQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEICGVLDR 126
             S     PR    ++     +    Y   K     +  + C++C+  F+EE+   +L +
Sbjct: 82  SAS-----PRDQALDQAVLDKIPIFVYSS-KNPPPPEEKEECSVCLSEFEEEDEGRLLPK 141

Query: 127 CGHCFHKVCIDQWLGIESRCPLCRCLVR 155
           CGH FH  CID W    S CPLCR  V+
Sbjct: 142 CGHSFHVDCIDTWFRSRSTCPLCRAPVQ 154

[Close]

BLAST of Csor.00g016270.m01 vs. TAIR 10
Match: AT4G30370.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-10
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 93  YKDIKTTEEADSDDCCAICIEGFQEEEICGVLDRCGHCFHKVCIDQWLGIESRCPLCR 151
           +K  + + E   DD C +CI+GF++ + C  L RCGH FH+ C+D WL   S CP+CR
Sbjct: 101 FKYCEPSSEYGGDD-CVVCIDGFRQGQWCRKLPRCGHVFHRKCVDLWLIKVSTCPICR 157

[Close]

BLAST of Csor.00g016270.m01 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 31/83 (37.35%), Postives = 42/83 (50.60%), Query Frame = 0


Query: 93  YKDIKTTEEADSDDCCAICIEGFQEEEICGVLDRCGHCFHKVCIDQWLGIESRCPLCRCL 152
           YK  K     +S D C++C+  FQE E   +L +C H FH  CID WL   S CPLCR  
Sbjct: 145 YKYRKMDGFVESSD-CSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAF 204

Query: 153 V--------------RVVSENNN 162
           +              ++V+ENN+
Sbjct: 205 IVTSSAVEIVDLTNQQIVTENNS 226

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BLAST of Csor.00g016270.m01 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 49/159 (30.82%), Postives = 78/159 (49.06%), Query Frame = 0


Query: 4   NMSH-----ELMGVIVLSAIAIIVFLSIFMFRCYHNH---LMQYQTRALDVEQTNHATRL 63
           NM+H      L G I+L+++ II+F+++ +  C+H++   L + Q R +    + H   L
Sbjct: 14  NMNHGSSRYSLNGKIMLASV-IILFVAVILILCFHSYARWLFRRQNRRIRRRISAHLRSL 73

Query: 64  FARFRAEFMRQQQSIVAPPPRSNTAEEEAASIVTKVAYKDIKTTEEADSDDCCAICIEGF 123
                A      QS  +  P   T  E+    V  V       T E+  ++ C++C+  F
Sbjct: 74  -----AAARDPTQSSSSLSPLDPTVLEKIPIFVYSV------KTHESPLEE-CSVCLSEF 133

Query: 124 QEEEICGVLDRCGHCFHKVCIDQWLGIESRCPLCRCLVR 155
           +E++   VL +CGH FH  CID W    S CPLCR  V+
Sbjct: 134 EEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPVQ 159

The following BLAST results are available for this feature:

BLAST of Csor.00g016270.m01 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRM0	7.6e-11	50.00	RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1	[more]
Q9M0C3	4.2e-09	44.83	RING-H2 finger protein ATL14 OS=Arabidopsis thaliana OX=3702 GN=ATL14 PE=2 SV=1	[more]
O22255	4.2e-09	28.38	RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1	[more]
Q9LRB7	9.3e-09	48.33	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]
Q9SRQ8	1.6e-08	37.35	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]

BLAST of Csor.00g016270.m01 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583431.1	7.87e-112	100.00	RING-H2 finger protein ATL5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7019192.1	5.28e-108	98.15	E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022964751.1	5.38e-100	93.04	RING-H2 finger protein ATL64-like [Cucurbita moschata]	[more]
XP_023520574.1	3.57e-99	89.51	RING-H2 finger protein ATL64-like [Cucurbita pepo subsp. pepo]	[more]
XP_022970384.1	5.54e-93	86.71	RING-H2 finger protein ATL64-like [Cucurbita maxima]	[more]

BLAST of Csor.00g016270.m01 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HJU0	2.61e-100	93.04	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742...	[more]
A0A6J1I5C3	2.68e-93	86.71	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469386 P...	[more]
A0A5D3BE50	4.09e-39	52.63	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A5A7VMH1	3.32e-38	51.97	RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A1S4E1K2	9.54e-31	56.73	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC107991538 PE=3 ...	[more]

BLAST of Csor.00g016270.m01 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11110.1	5.4e-12	50.00	RING/U-box superfamily protein	[more]
AT2G47560.1	3.0e-10	28.38	RING/U-box superfamily protein	[more]
AT4G30370.1	3.0e-10	44.83	RING/U-box superfamily protein	[more]
AT3G03550.1	1.1e-09	37.35	RING/U-box superfamily protein	[more]
AT3G62690.1	1.1e-09	30.82	AtL5	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 108..149 e-value: 1.1E-4 score: 31.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 107..150 e-value: 4.9E-11 score: 42.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 108..150 score: 12.740079
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 65..154 e-value: 1.5E-17 score: 65.0
None	No IPR available	PANTHER	PTHR45676:SF73	E3 UBIQUITIN-PROTEIN LIGASE RING1-RELATED	coord: 13..157
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 97..156
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 13..157

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csor.00g016270	Csor.00g016270	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g016270.m01.CDS01	Csor.00g016270.m01.CDS01	CDS

The following single feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g016270.m01.single01	Csor.00g016270.m01.single01	single

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g016270.m01.start_codon01	Csor.00g016270.m01.start_codon01	start_codon

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csor.00g016270.m01.stop_codon01	Csor.00g016270.m01.stop_codon01	stop_codon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csor.00g016270.m01	Csor.00g016270.m01-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane