CsaV3_7G021810.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G021810.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RING-type domain-containing protein
Location	chr7: 10505536 .. 10507948 (-)
Sequence length	639
RNA-Seq Expression	CsaV3_7G021810.1
Synteny	CsaV3_7G021810.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATGTAAGCTTATGCATTGTGTATATCATATCCACCAACTTGGCCCTACCATCTTCTTCTTTCTTCAATAATACCCTTTAAATATCCAAAGTAACTCACTAAACTTCAATGCAATTCTTCAAACTCTTTGACATGTTCCTGATTTCTTGTTCTGAGTTTACCATGCTGGTTCTTGAGTTTAAGGAGCAGCTTTTTTTCCATAAACCTCTTCGCTTCCTCACCGAAGCTTTGAAGATGATCACCTTCGCTTTGTTCCTCTCTCTTCTCGCTCTAGGTATGATGTCTCATCTCAATAAACTATTTGATACACGATAACACACCATAGATTGGGGTTTAATTAATAATATGGTTGCGAAAATATATAGTAAAAGAATCAGTATAATTGTTTTTGTTTTTCCGCCCTAAATTTAATTTGTACAGTTGGTGCGTCTGTGGGAACTGTGATCGGAGCCTTCAAAGGGCATGGCACGGGGATAGGCGCTATTGCCGGCGCGGCCGTAGCCCTTCAGATATTCAGCTCCAGTGCATCCGGGCATAGATATTGTTTATCAAGGGTAGGCTTTTCAGTATATCAAAGGTTAGAAGGAAAAATGTCATTTGAAATAATGGATATGTTTTTCTAGTCAAATTCATAAAACTTTAAAACTTCAAGTTATAGGTTTATTTCTTTAATTGTGTGTTTAAAATTAACACATAACTAAACTCTAAAAATGGCTAACAACCTTTTATATTTAATACATTTATATTTTGGATTTAATTTTTTAAAAAAAATGAAGTGATGTATATTAATTATAAAAGTAAATTTGGACCTATATTTTTAATTTTGTATTAAGTGGATAGATGAAATATTTATGAACCAAAATAAAATAAAGTAAAATACCTATTAGATATAAAATTAAAAGTTTTAAGAACCAATCATTACACTCTAAAATTTGGAGAACAATTAGGTAATATTTTATAGACTAAATTTATTTGCTAATTTACAGCAATATTTACTATTGGATTGAGCCTAGCTAATTGCTATATTTACGATGTATTTTAAAAAAATATATCAAATAATTAACTTTTAATATCAATGTTTTTATCCTTTTTTCCCTCTTCCTTAGACTGCATTTGATTGTGGCAGGAAGCAATAATGGAGAGGCTGATGGATGGGAAGGGGTTGATGAACTGGGTAAGTGAAAAAGCTTGAATAATGCTACCTTTAATGGCAGATTTTAAGATTCAATATTTTTCTAAAGATAAAAAATTTCAGGCAAGCAACTTCTCTGAGTATATGTATCGAGAGATATCGGAGTTTGTCGACGTTGCCGGAGAAAGTTGTGTAGAAGGGTTGTCGATGGAGAGTGTCCAAATGTTACCTGTTTGTGAATATGATCACACCACTGTCAACTCAATTTCTTGTTCTATTTGCTTAGAGGTAAATATTTATATATATATAATTATATTCTTTTGTCTAAAATATATTAAAGGCGTGTTTGAATTAACTTTCTTAAAGAAAGAATGTTTGGAGTAAGTAATAATTTATTGTAGTTTTGAGTTATTATCGTTGAATTATAATAGATTGTGTTTGAGTCATAGATTATTGTTTGAAATAACACAATATTTTTTAAAACAAAGAACTAAAATGGAATTTTTATCAATTTTTTTTTATTAAAAAAAGAAAGCTTACATGAATGTTTACAAATTTCTTCAGCCATGCAGAGAATTCTAATTGCTGTTGATTAAATGGAAAATAATTCAAAATAATTGTTTTTGTCTAAACTTTGGAATCTAATACAAATGGTTAAAAAAAAAATGAAAATTATAGCCTAAATAAAAATATTTGAAAATGGAGAGTAAAAACCAACCATTTCAAAGTTGAAAGAAAATATAATATATACTAAATAAAATAAATTTTCAAATAATCTAAAATAAGTGAAACTATTTATAAATATAACCATAGGTGAAATTTTTTTTATAGATACAAAAGTTTTATTATATTGGAGAGAATGGACCTAATTAATTAAAAAGAAATCCAGTTACATTGATGGTTATGTGTATGTAATGTTTAAAAAATAAGAAAAGGTCAATTAATGTCTTTTAAAGCCAATGATTTCTTTCAAACTTTTCTTTTTAAAAGAATATTTATGTTTGGTCACATTTTTCAGGAATTTGAAGATGGAGAAATTGGTAGGATACTTCCAAATTGTGATCATTTCTTTCATGTGGTTTGCATAGACCAATGGCTACACTTGCATGGATCTTGCCCATTTTGTAGGAAATTTTGTATTTAAACCATACCTCATTAAGTCATTATTATAATGTTAAATTAATTTTGTTTTTTTTTTCTTCTTCCATATAAATAAAAACAAAGAGAAGATGTATATTTTCTTATTAATTCATATCTCTAACTATCTTTATAATTTTG

mRNA sequence

ATGCAATTCTTCAAACTCTTTGACATGTTCCTGATTTCTTGTTCTGAGTTTACCATGCTGGTTCTTGAGTTTAAGGAGCAGCTTTTTTTCCATAAACCTCTTCGCTTCCTCACCGAAGCTTTGAAGATGATCACCTTCGCTTTGTTCCTCTCTCTTCTCGCTCTAGTTGGTGCGTCTGTGGGAACTGTGATCGGAGCCTTCAAAGGGCATGGCACGGGGATAGGCGCTATTGCCGGCGCGGCCGTAGCCCTTCAGATATTCAGCTCCAGTGCATCCGGGCATAGATATTGTTTATCAAGGGAAGCAATAATGGAGAGGCTGATGGATGGGAAGGGGTTGATGAACTGGGCAAGCAACTTCTCTGAGTATATGTATCGAGAGATATCGGAGTTTGTCGACGTTGCCGGAGAAAGTTGTGTAGAAGGGTTGTCGATGGAGAGTGTCCAAATGTTACCTGTTTGTGAATATGATCACACCACTGTCAACTCAATTTCTTGTTCTATTTGCTTAGAGGAATTTGAAGATGGAGAAATTGGTAGGATACTTCCAAATTGTGATCATTTCTTTCATGTGGTTTGCATAGACCAATGGCTACACTTGCATGGATCTTGCCCATTTTGTAGGAAATTTTGTATTTAA

Coding sequence (CDS)

ATGCAATTCTTCAAACTCTTTGACATGTTCCTGATTTCTTGTTCTGAGTTTACCATGCTGGTTCTTGAGTTTAAGGAGCAGCTTTTTTTCCATAAACCTCTTCGCTTCCTCACCGAAGCTTTGAAGATGATCACCTTCGCTTTGTTCCTCTCTCTTCTCGCTCTAGTTGGTGCGTCTGTGGGAACTGTGATCGGAGCCTTCAAAGGGCATGGCACGGGGATAGGCGCTATTGCCGGCGCGGCCGTAGCCCTTCAGATATTCAGCTCCAGTGCATCCGGGCATAGATATTGTTTATCAAGGGAAGCAATAATGGAGAGGCTGATGGATGGGAAGGGGTTGATGAACTGGGCAAGCAACTTCTCTGAGTATATGTATCGAGAGATATCGGAGTTTGTCGACGTTGCCGGAGAAAGTTGTGTAGAAGGGTTGTCGATGGAGAGTGTCCAAATGTTACCTGTTTGTGAATATGATCACACCACTGTCAACTCAATTTCTTGTTCTATTTGCTTAGAGGAATTTGAAGATGGAGAAATTGGTAGGATACTTCCAAATTGTGATCATTTCTTTCATGTGGTTTGCATAGACCAATGGCTACACTTGCATGGATCTTGCCCATTTTGTAGGAAATTTTGTATTTAA

Protein sequence

MQFFKLFDMFLISCSEFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASVGTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWASNFSEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQWLHLHGSCPFCRKFCI*

Homology

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BLAST of CsaV3_7G021810.1 vs. NCBI nr
Match: XP_011658973.2 (NEP1-interacting protein-like 1 [Cucumis sativus] >KGN44159.1 hypothetical protein Csa_016143 [Cucumis sativus])

HSP 1 Score: 424.9 bits (1091), Expect = 4.2e-115
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MQFFKLFDMFLISCSEFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASV 60
           MQFFKLFDMFLISCSEFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASV
Sbjct: 1   MQFFKLFDMFLISCSEFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASV 60

Query: 61  GTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWASNF 120
           GTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWASNF
Sbjct: 61  GTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWASNF 120

Query: 121 SEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGR 180
           SEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGR
Sbjct: 121 SEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGR 180

Query: 181 ILPNCDHFFHVVCIDQWLHLHGSCPFCRKFCI 213
           ILPNCDHFFHVVCIDQWLHLHGSCPFCRKFCI
Sbjct: 181 ILPNCDHFFHVVCIDQWLHLHGSCPFCRKFCI 212

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BLAST of CsaV3_7G021810.1 vs. NCBI nr
Match: XP_008447740.1 (PREDICTED: NEP1-interacting protein-like 2 isoform X2 [Cucumis melo])

HSP 1 Score: 340.5 bits (872), Expect = 1.0e-89
Identity = 172/195 (88.21%), Postives = 177/195 (90.77%), Query Frame = 0


Query: 19  MLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASVGTVIGAFKGHGTGIGAIA 78
           MLV+EFKEQLFF K LRFL EALK I  AL LSLLALVGA VGTVIGAFKGHG  IGAIA
Sbjct: 1   MLVVEFKEQLFFDKALRFLAEALKTIALALLLSLLALVGACVGTVIGAFKGHGAAIGAIA 60

Query: 79  GAAVALQIFSSSASGHR-YCLSREAIMERLMDGKGLMNWASNFSEYMYREISEFVDVAGE 138
           GAAVALQI S +ASG R YCLSREAIME LMDGKGLMNWASNFSEYM+REISEFVDVAGE
Sbjct: 61  GAAVALQIVSCTASGQRYYCLSREAIMESLMDGKGLMNWASNFSEYMHREISEFVDVAGE 120

Query: 139 SCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQW 198
           SC EGLSMESVQMLPVCEYDH+T+NSISCSICLEEFEDGEIGRILPNCDHFFHV CIDQW
Sbjct: 121 SCAEGLSMESVQMLPVCEYDHSTINSISCSICLEEFEDGEIGRILPNCDHFFHVGCIDQW 180

Query: 199 LHLHGSCPFCRKFCI 213
           LHLHGSCP CRKFCI
Sbjct: 181 LHLHGSCPICRKFCI 195

[Close]

BLAST of CsaV3_7G021810.1 vs. NCBI nr
Match: XP_008447739.1 (PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Cucumis melo])

HSP 1 Score: 335.5 bits (859), Expect = 3.4e-88
Identity = 172/197 (87.31%), Postives = 177/197 (89.85%), Query Frame = 0


Query: 19  MLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASVGTVIGAFKGHGTGIGAIA 78
           MLV+EFKEQLFF K LRFL EALK I  AL LSLLALVGA VGTVIGAFKGHG  IGAIA
Sbjct: 1   MLVVEFKEQLFFDKALRFLAEALKTIALALLLSLLALVGACVGTVIGAFKGHGAAIGAIA 60

Query: 79  GAAVALQIFSSSASGHR-YCLSR--EAIMERLMDGKGLMNWASNFSEYMYREISEFVDVA 138
           GAAVALQI S +ASG R YCLSR  EAIME LMDGKGLMNWASNFSEYM+REISEFVDVA
Sbjct: 61  GAAVALQIVSCTASGQRYYCLSRWQEAIMESLMDGKGLMNWASNFSEYMHREISEFVDVA 120

Query: 139 GESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCID 198
           GESC EGLSMESVQMLPVCEYDH+T+NSISCSICLEEFEDGEIGRILPNCDHFFHV CID
Sbjct: 121 GESCAEGLSMESVQMLPVCEYDHSTINSISCSICLEEFEDGEIGRILPNCDHFFHVGCID 180

Query: 199 QWLHLHGSCPFCRKFCI 213
           QWLHLHGSCP CRKFCI
Sbjct: 181 QWLHLHGSCPICRKFCI 197

[Close]

BLAST of CsaV3_7G021810.1 vs. NCBI nr
Match: XP_038897454.1 (NEP1-interacting protein-like 2 [Benincasa hispida])

HSP 1 Score: 323.6 bits (828), Expect = 1.3e-84
Identity = 166/216 (76.85%), Postives = 179/216 (82.87%), Query Frame = 0


Query: 1   MQFFKLFDMFLISCS---EFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVG 60
           M+FFKLF M  ISCS   +F +LV+EFKEQ  F K  RF  EA K + FALFLSLLALVG
Sbjct: 1   MEFFKLFGMSFISCSKLTKFRLLVIEFKEQQVFDKAFRFFVEASKTVGFALFLSLLALVG 60

Query: 61  ASVGTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWA 120
           AS GTVIGAFKGHG  IGAIAGAA  LQI + + SGHRY LSREAIMERLMDGKGLMNWA
Sbjct: 61  ASAGTVIGAFKGHGAAIGAIAGAATVLQILNCTESGHRYTLSREAIMERLMDGKGLMNWA 120

Query: 121 SNFSEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVN-SISCSICLEEFEDG 180
           +NFSEY+ REISE VDV GESCVEG+SMESV MLPVC+YDH+ +N SISCSICLEE EDG
Sbjct: 121 NNFSEYICREISELVDVTGESCVEGMSMESVGMLPVCQYDHSKMNYSISCSICLEELEDG 180

Query: 181 EIGRILPNCDHFFHVVCIDQWLHLHGSCPFCRKFCI 213
           E GRILPNCDHFFHV CIDQWLHLHGSCP CRK CI
Sbjct: 181 EFGRILPNCDHFFHVGCIDQWLHLHGSCPICRKCCI 216

[Close]

BLAST of CsaV3_7G021810.1 vs. NCBI nr
Match: XP_023536459.1 (NEP1-interacting protein-like 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.1 bits (780), Expect = 4.9e-79
Identity = 159/214 (74.30%), Postives = 173/214 (80.84%), Query Frame = 0


Query: 1   MQFFKLFDMFLISCSEFTM--LVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGA 60
           M+FF  F + +IS S  TM  LV+E K    F K LRF  EALK  TFALFL LLALVGA
Sbjct: 1   MKFFNPFHLSIISSSHLTMLRLVIELKHHPIFDKALRFFVEALKTTTFALFLCLLALVGA 60

Query: 61  SVGTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWAS 120
           SVGTVIGAFKGHG  IGAIAGAA ALQ+ S   S +RY LS+EAIME LM+GKGLMNWAS
Sbjct: 61  SVGTVIGAFKGHGVAIGAIAGAAAALQLLSYPESEYRYSLSKEAIMESLMNGKGLMNWAS 120

Query: 121 NFSEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTV-NSISCSICLEEFEDGE 180
           NFSEYMYRE+SEFVDVAGESCVEG+SMESVQ LP+C+YDH  + NSISC ICLEEFEDGE
Sbjct: 121 NFSEYMYREMSEFVDVAGESCVEGMSMESVQNLPICDYDHGKMKNSISCPICLEEFEDGE 180

Query: 181 IGRILPNCDHFFHVVCIDQWLHLHGSCPFCRKFC 212
            GR LPNCDHFFHV CIDQWL L+G CPFCRKFC
Sbjct: 181 FGRRLPNCDHFFHVDCIDQWLRLNGCCPFCRKFC 214

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BLAST of CsaV3_7G021810.1 vs. ExPASy Swiss-Prot
Match: Q8LBA0 (NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV=2)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-19
Identity = 63/186 (33.87%), Postives = 91/186 (48.92%), Query Frame = 0


Query: 52  LLALVGASVGTVIGAFKG--------HGTGIGAIAGAAVALQIFSSS-------ASGHRY 111
           + A+ GA  G V GA  G         G  +GA+AGA +++++  +S        SG R 
Sbjct: 37  IFAMAGAFTGAVTGAVAGRAAQYGVLRGAALGAVAGAILSVEVLEASRAYWYLELSGSRG 96

Query: 112 CLSREAIMERLMDGK-----------GLMNWASNFSEYMYREISEFVDVAGESCVEGLSM 171
             S    +E+L  G+              +W    S+  Y E     DV GE    GLS 
Sbjct: 97  PSSMADFVEQLFRGRLVDEQLMSTMINSHHWQLRISDVSYEERE---DVYGELEARGLSG 156

Query: 172 ESVQMLP--VCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQWLHLHGS 210
           +S++ LP  +   +        C+ICL++ + GEI R LP CDH FH+VC+D+WL  HGS
Sbjct: 157 DSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGS 216

[Close]

BLAST of CsaV3_7G021810.1 vs. ExPASy Swiss-Prot
Match: Q9FKX5 (NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.4e-19
Identity = 57/186 (30.65%), Postives = 93/186 (50.00%), Query Frame = 0


Query: 47  ALFLSLLALVGASVGTVIGAFKG--------HGTGIGAIAGAAVALQIFSSS-------A 106
           ALF    ALVG  +G + GA  G         G  +GAI+GA  ++++F SS        
Sbjct: 34  ALFTFFFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLLLWQSDE 93

Query: 107 SGHRYCLSREAIMERLMDGK--------GLMNWASNFSEYMYREISEFVDVAGESCVEGL 166
           SG    L    ++  L+ G+         +++   +    +  +  +  D+   +  +GL
Sbjct: 94  SGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVESQFQDHTDIFDTAISKGL 153

Query: 167 SMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQWLHLHGS 210
           + +S+  +P      T+   +SCS+CL++F+ GE  R LP+C H FH+ CID+WL  H S
Sbjct: 154 TGDSLNRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHAS 213

[Close]

BLAST of CsaV3_7G021810.1 vs. ExPASy Swiss-Prot
Match: Q8GT75 (NEP1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=NIP1 PE=1 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 2.1e-16
Identity = 61/203 (30.05%), Postives = 99/203 (48.77%), Query Frame = 0


Query: 37  LTEALKMITFALFLSLLALVGASVGTVIGAFKG--------HGTGIGAIAGAAVALQIFS 96
           L+  L  I  A+     ALVG  +G + GA  G         G  +GAI+GA  ++++F 
Sbjct: 34  LSAVLGTILSAVLTFFFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFE 93

Query: 97  SS-----ASGHRY-CL-----------SREAIMERLMDGKGLMNWASN---FSEYMYREI 156
           SS     ++  R+ CL           S   + ER+  G  +++   +     +  + E+
Sbjct: 94  SSLVLWKSNESRFGCLLYLIDVIVSLISGRLVRERI--GPAMLSAVQSQMGAVDSTFEEL 153

Query: 157 SEFVDVAGESCVEGLSMESVQMLPVCEYDH--TTVNSISCSICLEEFEDGEIGRILPNCD 210
           S   D  G   + G  ++ +  + +   ++   + N  SCS+CL++F+ GE  R LP+C 
Sbjct: 154 SSIFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCH 213

[Close]

BLAST of CsaV3_7G021810.1 vs. ExPASy Swiss-Prot
Match: Q8L9T5 (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-16
Identity = 35/68 (51.47%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 142 GLSMESVQMLPVCEY-DHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQWLHL 201
           GL    ++ LPV  + D T  + I C++CL EFE+ E GR+LPNC H FHV CID W H 
Sbjct: 94  GLDPNVIKSLPVFTFSDETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHS 153

Query: 202 HGSCPFCR 209
           H +CP CR
Sbjct: 154 HSTCPLCR 161

[Close]

BLAST of CsaV3_7G021810.1 vs. ExPASy Swiss-Prot
Match: Q8GT74 (NEP1-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=NIP2 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.9e-16
Identity = 62/203 (30.54%), Postives = 95/203 (46.80%), Query Frame = 0


Query: 36  FLTEA-LKMITFALFLSLLALVGASVGTVIGAFKG--------HGTGIGAIAGAAVALQI 95
           FL  A L  I  A+     ALVG  +G + GA  G         G  IGAI+GA  ++++
Sbjct: 37  FLVSAVLGTIISAILTFFFALVGTLLGALTGALIGQETESGFIRGAAIGAISGAVFSIEV 96

Query: 96  FSSS-------ASGHRYCLSREAIMERLMDGK-----------GLMNWASNFSEYMYREI 155
           F SS        SG    L    ++  L+ G+             +       +  + + 
Sbjct: 97  FESSLDLWKSDESGFGCFLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAVDTAFDDH 156

Query: 156 SEFVDVAGESCVEGLSMESVQMLPVCEYDHT--TVNSISCSICLEEFEDGEIGRILPNCD 210
           +   D  G   + G  +E +  + +   ++T  + N+ SCS+CL++F+ GE  R LP+C 
Sbjct: 157 TSLFDTGGSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCH 216

[Close]

BLAST of CsaV3_7G021810.1 vs. ExPASy TrEMBL
Match: A0A0A0K5D1 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G209550 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 2.0e-115
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 0


Query: 1   MQFFKLFDMFLISCSEFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASV 60
           MQFFKLFDMFLISCSEFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASV
Sbjct: 1   MQFFKLFDMFLISCSEFTMLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASV 60

Query: 61  GTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWASNF 120
           GTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWASNF
Sbjct: 61  GTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWASNF 120

Query: 121 SEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGR 180
           SEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGR
Sbjct: 121 SEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGR 180

Query: 181 ILPNCDHFFHVVCIDQWLHLHGSCPFCRKFCI 213
           ILPNCDHFFHVVCIDQWLHLHGSCPFCRKFCI
Sbjct: 181 ILPNCDHFFHVVCIDQWLHLHGSCPFCRKFCI 212

[Close]

BLAST of CsaV3_7G021810.1 vs. ExPASy TrEMBL
Match: A0A1S3BIQ9 (NEP1-interacting protein-like 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490143 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 5.1e-90
Identity = 172/195 (88.21%), Postives = 177/195 (90.77%), Query Frame = 0


Query: 19  MLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASVGTVIGAFKGHGTGIGAIA 78
           MLV+EFKEQLFF K LRFL EALK I  AL LSLLALVGA VGTVIGAFKGHG  IGAIA
Sbjct: 1   MLVVEFKEQLFFDKALRFLAEALKTIALALLLSLLALVGACVGTVIGAFKGHGAAIGAIA 60

Query: 79  GAAVALQIFSSSASGHR-YCLSREAIMERLMDGKGLMNWASNFSEYMYREISEFVDVAGE 138
           GAAVALQI S +ASG R YCLSREAIME LMDGKGLMNWASNFSEYM+REISEFVDVAGE
Sbjct: 61  GAAVALQIVSCTASGQRYYCLSREAIMESLMDGKGLMNWASNFSEYMHREISEFVDVAGE 120

Query: 139 SCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQW 198
           SC EGLSMESVQMLPVCEYDH+T+NSISCSICLEEFEDGEIGRILPNCDHFFHV CIDQW
Sbjct: 121 SCAEGLSMESVQMLPVCEYDHSTINSISCSICLEEFEDGEIGRILPNCDHFFHVGCIDQW 180

Query: 199 LHLHGSCPFCRKFCI 213
           LHLHGSCP CRKFCI
Sbjct: 181 LHLHGSCPICRKFCI 195

[Close]

BLAST of CsaV3_7G021810.1 vs. ExPASy TrEMBL
Match: A0A1S3BI36 (NEP1-interacting protein-like 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490143 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.6e-88
Identity = 172/197 (87.31%), Postives = 177/197 (89.85%), Query Frame = 0


Query: 19  MLVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGASVGTVIGAFKGHGTGIGAIA 78
           MLV+EFKEQLFF K LRFL EALK I  AL LSLLALVGA VGTVIGAFKGHG  IGAIA
Sbjct: 1   MLVVEFKEQLFFDKALRFLAEALKTIALALLLSLLALVGACVGTVIGAFKGHGAAIGAIA 60

Query: 79  GAAVALQIFSSSASGHR-YCLSR--EAIMERLMDGKGLMNWASNFSEYMYREISEFVDVA 138
           GAAVALQI S +ASG R YCLSR  EAIME LMDGKGLMNWASNFSEYM+REISEFVDVA
Sbjct: 61  GAAVALQIVSCTASGQRYYCLSRWQEAIMESLMDGKGLMNWASNFSEYMHREISEFVDVA 120

Query: 139 GESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCID 198
           GESC EGLSMESVQMLPVCEYDH+T+NSISCSICLEEFEDGEIGRILPNCDHFFHV CID
Sbjct: 121 GESCAEGLSMESVQMLPVCEYDHSTINSISCSICLEEFEDGEIGRILPNCDHFFHVGCID 180

Query: 199 QWLHLHGSCPFCRKFCI 213
           QWLHLHGSCP CRKFCI
Sbjct: 181 QWLHLHGSCPICRKFCI 197

[Close]

BLAST of CsaV3_7G021810.1 vs. ExPASy TrEMBL
Match: A0A6J1IML2 (NEP1-interacting protein-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111476931 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 1.9e-76
Identity = 155/214 (72.43%), Postives = 169/214 (78.97%), Query Frame = 0


Query: 1   MQFFKLFDMFLISCSEFTM--LVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGA 60
           M+FF  F + + S S  TM  LV+E K  L F K L F  EAL  I FALFL LLALVGA
Sbjct: 1   MKFFNPFHLSINSSSHLTMLRLVIELKHHLVFDKALWFFVEALNAIAFALFLCLLALVGA 60

Query: 61  SVGTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWAS 120
           SVGTVIGAFKGHG  IGAI GAA ALQ+ S     +RY LS+EAIME LM+GKGLMNWAS
Sbjct: 61  SVGTVIGAFKGHGAAIGAIVGAAAALQLLSCPEPEYRYSLSKEAIMESLMNGKGLMNWAS 120

Query: 121 NFSEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTV-NSISCSICLEEFEDGE 180
           NFSEYMYRE+SEFVDVAGESCVEG+SMESVQ LP+CEYDH+ + NSISC ICLEEFE GE
Sbjct: 121 NFSEYMYREMSEFVDVAGESCVEGMSMESVQNLPICEYDHSKMKNSISCPICLEEFEVGE 180

Query: 181 IGRILPNCDHFFHVVCIDQWLHLHGSCPFCRKFC 212
            GR LPNCDHFFHV CIDQWL L+G CPFCRKFC
Sbjct: 181 FGRKLPNCDHFFHVDCIDQWLRLNGCCPFCRKFC 214

[Close]

BLAST of CsaV3_7G021810.1 vs. ExPASy TrEMBL
Match: A0A6J1F6T6 (NEP1-interacting protein-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111442860 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 4.6e-75
Identity = 152/214 (71.03%), Postives = 168/214 (78.50%), Query Frame = 0


Query: 1   MQFFKLFDMFLISCSEFTM--LVLEFKEQLFFHKPLRFLTEALKMITFALFLSLLALVGA 60
           M+FF  F + +IS S  TM  LV+E K    F K L F  +A     FALFL LLALVGA
Sbjct: 1   MKFFNPFHLSIISSSHLTMLRLVIELKHHPVFDKALLFFVKAFNTTAFALFLCLLALVGA 60

Query: 61  SVGTVIGAFKGHGTGIGAIAGAAVALQIFSSSASGHRYCLSREAIMERLMDGKGLMNWAS 120
           SVGTV+GAFKGHG  IGAIAGAA ALQ+ S   S +RY LS+EAIME LM+GKGLMNWAS
Sbjct: 61  SVGTVVGAFKGHGVAIGAIAGAAAALQLLSCPESEYRYSLSKEAIMESLMNGKGLMNWAS 120

Query: 121 NFSEYMYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTV-NSISCSICLEEFEDGE 180
           NFSEYMYRE+SEFVDVAGES VEG+SMESVQ LP+CEY H+ + NSISC ICLEEFEDGE
Sbjct: 121 NFSEYMYREMSEFVDVAGESSVEGMSMESVQNLPICEYHHSKMKNSISCPICLEEFEDGE 180

Query: 181 IGRILPNCDHFFHVVCIDQWLHLHGSCPFCRKFC 212
            GR LPNCDHFFHV CIDQWL L+G CPFCRKFC
Sbjct: 181 FGRELPNCDHFFHVDCIDQWLRLNGCCPFCRKFC 214

[Close]

BLAST of CsaV3_7G021810.1 vs. TAIR 10
Match: AT1G74410.1 (RING/U-box superfamily protein )

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-20
Identity = 63/186 (33.87%), Postives = 91/186 (48.92%), Query Frame = 0


Query: 52  LLALVGASVGTVIGAFKG--------HGTGIGAIAGAAVALQIFSSS-------ASGHRY 111
           + A+ GA  G V GA  G         G  +GA+AGA +++++  +S        SG R 
Sbjct: 37  IFAMAGAFTGAVTGAVAGRAAQYGVLRGAALGAVAGAILSVEVLEASRAYWYLELSGSRG 96

Query: 112 CLSREAIMERLMDGK-----------GLMNWASNFSEYMYREISEFVDVAGESCVEGLSM 171
             S    +E+L  G+              +W    S+  Y E     DV GE    GLS 
Sbjct: 97  PSSMADFVEQLFRGRLVDEQLMSTMINSHHWQLRISDVSYEERE---DVYGELEARGLSG 156

Query: 172 ESVQMLP--VCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQWLHLHGS 210
           +S++ LP  +   +        C+ICL++ + GEI R LP CDH FH+VC+D+WL  HGS
Sbjct: 157 DSLRKLPCYIMSSEMVRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGS 216

[Close]

BLAST of CsaV3_7G021810.1 vs. TAIR 10
Match: AT3G20395.1 (RING/U-box superfamily protein )

HSP 1 Score: 97.1 bits (240), Expect = 1.9e-20
Identity = 60/191 (31.41%), Postives = 94/191 (49.21%), Query Frame = 0


Query: 37  LTEALKMITFALFLSLLALVGASVGTVIGAFKGH--------GTGIGAIAGAAVALQIFS 96
           ++  +K      F+ +LA     V  ++GA +GH        G+ +G +AG   A+Q+F 
Sbjct: 26  MSRTIKRALLGSFIFILASASVVVAAIVGAIEGHTTDIGFLQGSVLGVVAGVITAVQLFG 85

Query: 97  SSASGHRYCLSREAIMERLMDGKGLM-----------NWASNFSEYMYREISEFVDVAGE 156
                 +  LS+ A++ R+++GK +M            W     +  Y E S   D   E
Sbjct: 86  PVLHSDQ-PLSKVALLRRVVNGKAIMGLVRPFVLKAYQWQIIALDTSYMESSNLYDFNHE 145

Query: 157 SCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQW 209
              +GLS  S+Q +P+           SCSICL+++E+GE+GR L  C H FH+ CID+W
Sbjct: 146 K--KGLSKSSIQNIPMFYNRSEHQTKSSCSICLQDWEEGEVGRKLARCGHTFHMNCIDEW 205

[Close]

BLAST of CsaV3_7G021810.1 vs. TAIR 10
Match: AT5G66070.1 (RING/U-box superfamily protein )

HSP 1 Score: 96.7 bits (239), Expect = 2.4e-20
Identity = 57/186 (30.65%), Postives = 93/186 (50.00%), Query Frame = 0


Query: 47  ALFLSLLALVGASVGTVIGAFKG--------HGTGIGAIAGAAVALQIFSSS-------A 106
           ALF    ALVG  +G + GA  G         G  +GAI+GA  ++++F SS        
Sbjct: 34  ALFTFFFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLLLWQSDE 93

Query: 107 SGHRYCLSREAIMERLMDGK--------GLMNWASNFSEYMYREISEFVDVAGESCVEGL 166
           SG    L    ++  L+ G+         +++   +    +  +  +  D+   +  +GL
Sbjct: 94  SGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVESQFQDHTDIFDTAISKGL 153

Query: 167 SMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIGRILPNCDHFFHVVCIDQWLHLHGS 210
           + +S+  +P      T+   +SCS+CL++F+ GE  R LP+C H FH+ CID+WL  H S
Sbjct: 154 TGDSLNRIPKVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHAS 213

[Close]

BLAST of CsaV3_7G021810.1 vs. TAIR 10
Match: AT5G66070.2 (RING/U-box superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 3.9e-18
Identity = 60/210 (28.57%), Postives = 95/210 (45.24%), Query Frame = 0


Query: 47  ALFLSLLALVGASVGTVIGAFKG--------HGTGIGAIAGAAVALQIFSSS-------A 106
           ALF    ALVG  +G + GA  G         G  +GAI+GA  ++++F SS        
Sbjct: 34  ALFTFFFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLLLWQSDE 93

Query: 107 SGHRYCLSREAIMERLMDGK------------------------------GLMNWASNFS 166
           SG    L    ++  L+ G+                               L+N+  N  
Sbjct: 94  SGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQVQLPFLFFDASFIILLNFCINNK 153

Query: 167 EY--MYREISEFVDVAGESCVEGLSMESVQMLPVCEYDHTTVNSISCSICLEEFEDGEIG 210
           +   +  +  +  D+   +  +GL+ +S+  +P      T+   +SCS+CL++F+ GE  
Sbjct: 154 QMGAVESQFQDHTDIFDTAISKGLTGDSLNRIPKVRITDTSPEIVSCSVCLQDFQVGETV 213

[Close]

BLAST of CsaV3_7G021810.1 vs. TAIR 10
Match: AT4G35840.1 (RING/U-box superfamily protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.5e-17
Identity = 61/203 (30.05%), Postives = 99/203 (48.77%), Query Frame = 0


Query: 37  LTEALKMITFALFLSLLALVGASVGTVIGAFKG--------HGTGIGAIAGAAVALQIFS 96
           L+  L  I  A+     ALVG  +G + GA  G         G  +GAI+GA  ++++F 
Sbjct: 34  LSAVLGTILSAVLTFFFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFE 93

Query: 97  SS-----ASGHRY-CL-----------SREAIMERLMDGKGLMNWASN---FSEYMYREI 156
           SS     ++  R+ CL           S   + ER+  G  +++   +     +  + E+
Sbjct: 94  SSLVLWKSNESRFGCLLYLIDVIVSLISGRLVRERI--GPAMLSAVQSQMGAVDSTFEEL 153

Query: 157 SEFVDVAGESCVEGLSMESVQMLPVCEYDH--TTVNSISCSICLEEFEDGEIGRILPNCD 210
           S   D  G   + G  ++ +  + +   ++   + N  SCS+CL++F+ GE  R LP+C 
Sbjct: 154 SSIFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCH 213

The following BLAST results are available for this feature:

BLAST of CsaV3_7G021810.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658973.2	4.2e-115	100.00	NEP1-interacting protein-like 1 [Cucumis sativus] >KGN44159.1 hypothetical prote...	[more]
XP_008447740.1	1.0e-89	88.21	PREDICTED: NEP1-interacting protein-like 2 isoform X2 [Cucumis melo]	[more]
XP_008447739.1	3.4e-88	87.31	PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Cucumis melo]	[more]
XP_038897454.1	1.3e-84	76.85	NEP1-interacting protein-like 2 [Benincasa hispida]	[more]
XP_023536459.1	4.9e-79	74.30	NEP1-interacting protein-like 2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_7G021810.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LBA0	1.5e-19	33.87	NEP1-interacting protein-like 2 OS=Arabidopsis thaliana OX=3702 GN=ATL24 PE=1 SV...	[more]
Q9FKX5	3.4e-19	30.65	NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV...	[more]
Q8GT75	2.1e-16	30.05	NEP1-interacting protein 1 OS=Arabidopsis thaliana OX=3702 GN=NIP1 PE=1 SV=2	[more]
Q8L9T5	4.7e-16	51.47	RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2	[more]
Q8GT74	7.9e-16	30.54	NEP1-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=NIP2 PE=1 SV=1	[more]

BLAST of CsaV3_7G021810.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5D1	2.0e-115	100.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G209550 P...	[more]
A0A1S3BIQ9	5.1e-90	88.21	NEP1-interacting protein-like 2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1034901...	[more]
A0A1S3BI36	1.6e-88	87.31	NEP1-interacting protein-like 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034901...	[more]
A0A6J1IML2	1.9e-76	72.43	NEP1-interacting protein-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111476931 PE=4...	[more]
A0A6J1F6T6	4.6e-75	71.03	NEP1-interacting protein-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111442860 PE...	[more]

BLAST of CsaV3_7G021810.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74410.1	1.1e-20	33.87	RING/U-box superfamily protein	[more]
AT3G20395.1	1.9e-20	31.41	RING/U-box superfamily protein	[more]
AT5G66070.1	2.4e-20	30.65	RING/U-box superfamily protein	[more]
AT5G66070.2	3.9e-18	28.57	RING/U-box superfamily protein	[more]
AT4G35840.1	1.5e-17	30.05	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 166..207 e-value: 3.1E-6 score: 36.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 165..208 e-value: 2.6E-13 score: 50.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 166..208 score: 12.356501
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 133..211 e-value: 5.8E-18 score: 66.3
IPR044523	RING domain-containing protein NIP1/2-like	PANTHER	PTHR46151	NEP1-INTERACTING PROTEIN-LIKE 2	coord: 9..210
None	No IPR available	PANTHER	PTHR46151:SF12	RING/U-BOX SUPERFAMILY PROTEIN	coord: 9..210
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 152..211

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G021810	CsaV3_7G021810	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G021810.1.exon5	CsaV3_7G021810.1.exon5	exon
CsaV3_7G021810.1.exon4	CsaV3_7G021810.1.exon4	exon
CsaV3_7G021810.1.exon3	CsaV3_7G021810.1.exon3	exon
CsaV3_7G021810.1.exon2	CsaV3_7G021810.1.exon2	exon
CsaV3_7G021810.1.exon1	CsaV3_7G021810.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G021810.1.cds5	CsaV3_7G021810.1.cds5	CDS
CsaV3_7G021810.1.cds4	CsaV3_7G021810.1.cds4	CDS
CsaV3_7G021810.1.cds3	CsaV3_7G021810.1.cds3	CDS
CsaV3_7G021810.1.cds2	CsaV3_7G021810.1.cds2	CDS
CsaV3_7G021810.1.cds1	CsaV3_7G021810.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G021810.1	CsaV3_7G021810.1-protein	polypeptide