CsaV3_7G021700.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G021700.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Small nuclear ribonucleoprotein E
Location	chr7: 10385768 .. 10388579 (+)
Sequence length	215
RNA-Seq Expression	CsaV3_7G021700.1
Synteny	CsaV3_7G021700.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTTGATTTTCAGGTTCCTTCAAAGTGTAAGTTCCTTTTCATGATCATTTAGTTTATTTTCCATTTTGGGTATCGACAATTTTTTGTTGTTTTTTTTTTCTAAATAGTGAAATTGGTGTGTTCTTTCTCTGATGCTTCTTACTTATGTCTTCACGTTGGAAATTTGTACAGAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACCTGAGGATTGAAGGCCGAATCATTGTAAGTTCTTTGGACTTGTGGGCTTTTGCTTTAAGAAACCATCGCGCCAGTAGTTAGTTTATCTATTCTTAATGTACATTTGGATGTTTAAAAAGCTTACTAGGATTTTAAGTTTCCTAATATTGATTCTTCATCTGGGGTTTTAAGTTATTTTTTCGAACTGAGGTACATAGTTATGCTTTTACTTTTATCACACTCAAAGAGATCATTCCAACATCGATACAAAAGGAAGATAGTTTAGTCCTGTTTGGTAATCATTTGATTTTTTGTTTTTTGGTTTTTGAAAATTTAACTTATAAACCCCACTTTGGTCGTTGGCAAATTCTGGGGCTTTCTCTGCTCATTTGACCTTCCACGAACCTACCAGTTACCCGAACTAGTCATAAGCTCAAAACCCTGCAGATGAAGTTGATATGATTATATGGAAGTTTTATATTCCAAAGAAGATAAAAGTCTTCCGCTGGATTCTCACGCATAATAATGTAAATACTTACGGAATCTTAGAAAGCATTGCTTGTCTCCATCGGTGTGCTTGCTCTGCCTAAAAGGATAGGGATCCAGTAACCACTTATTCCCATTTTTAGCTTCGGTAGAAGGGGTTGGTAGCAACTTCTTAAACTTTTTGTCTAAAACTTTTTCTTCTTGAGGAGATAGGTAGTTGGTTTTTAGAAGCTCTTTAAGGGTGGTCCTTTGAATGTAAAGCTGAAATCCTATGGGGTTGTGTAACTCAGGTTCTTTTATGAGAGCTGTGGAAAGAACTATTTGAACAACCTATGAAGATAAGTCCTGCTCCTTTGTTGATTTTTGTAACCTTGTACAAATTATTTTTTTTTGAAAAGGAGACAGCCTCTTTATTAATATAATAATAATGAGACTAATTAATTTTTTTTATGGACTCTTAGATACGAGGATCCTTGAAGATATGACTTTATTTATTTCTTTTTTTGTGATTAATACATCATTCTGTATCTTATAGAAAAAGCCAAGAATATGAGAACACATAAATATCTTCTTCCCTTAGTTGTGATTTGGTTTGGTTACACCGCCTGCCCAAGATCAACTTGCATTGCAGAAAAAGACAATCAATTTTTTTGTTTCCTTAATATAGTTGTCCACCATCTAGGTTGGTGGCTATCATTTTTGAAGCCATGGATTCTCAAGCCATTTTTGAAGAAATATTTGGCTCATGAACGTTAGTAGTAGTTGTACTGCAAGGGATAAAGGATTTGTGTGTCTAGGATCCCGACCTTGTGGACGGTGTCTCCTATAACACGTTTTACATTTGTTGCATCCCCCGCCGTTTAGTGAGTTTATGTTCTTTGACATCTGAAAATTTAAGATTCATAAAAAAGTAAGGTTCTTTATTTGGCAAGTTTTATATAAATGTGTGAACACATTGGACTGACACTTGAGGGGGATTCCTTTGCTAGTGGGCCATTTTGCTATATTCTTTGTTGGATGGCAGAGGAGGATTTGAATTACATTCTTTGGAGGTGTGAGTTTTTGTTTGCGTTTGGGACGTTTTTCTAGACTTTTGTTTTGATGCTTGCCTGTCCTAGGGGCACTAGAGATATGATCAGGGAGTTCTTCCACTAATTCAATGCCTCAAGATCTCTTCCATTATTCCACGACTCTTTGGTGTTCCTTTCCTCATAGTCTTAGGTAAAATCTCTTTTAATATTGACATCATCTACAGTACCAAAACATTATTATTACCGTTAATATTTTGGTAAGAAATTGTGTCATGGAGAGAAATGAAAGAATGTACAAGGACACACATAAAAACAAAAACCTAACAAAAAAGGGGCGCTAATTGAAAAGAACAAGATTGAACTCATAATTACGATAATGCCTTACAACTTGGGTGTTCTGATGCTCATGGGCTATAATTGTTAGTCTATTATCCAAGGGGCCATTTGAGGCACCAATTGGAAGTTGGTGGAGTGGGTTATTGTAGACCACTTCATGTTTGGTGCACCAACTATAATAATGGTGTGGAAAACTATATACAATCTACAATTAACTATAGTAAATACTATTTTAAAACCCTCTTTGCTACAATATTTACTATTTGTTACAATATTTGGTATTTTTCACTCATCTACTCTTTTCTTCTTTAGTATAGTGTTTACTATTTCCTACTTGAACAAAAATAGTTGACACCCTAAACACAAACTACTATAACTCAGACTATTATAACTCAAATGCGAACTATTATAACTCACTAACTATTGATAATGACCAACTCAGGACCCCAAATGCTCCTTAAGTTTTTTCAATTTGAGAGTTTCTATAAGTTTGTGATGTGTCTTCTGAACATTATTAATTTTCTGGTGATGACTTCTGAGCTTTACTTCCCCAGGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAATGTAAAGAAGAAGAGCAGGAAAACTTTGGGTTTGTCTCTTCATCATTTCCCTCTTGAAGCCAATACTTAAATTAGTTTAAGGGCAGAATAAAAACTCGTCTCATCTTTAACCTTTACAGGGAGGATACTGCTTAAAGGGGATAACATAACTCTGATGATGAACTC

mRNA sequence

AACTTGATTTTCAGGTTCCTTCAAAGTAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACCTGAGGATTGAAGGCCGAATCATTGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAATGTAAAGAAGAAGAGCAGGAAAACTTTGGGGAGGATACTGCTTAAAGGGGATAACATAACTCTGATGATGAACTC

Coding sequence (CDS)

AACTTGATTTTCAGGTTCCTTCAAAGTAAAGCTCGAATTCAAATATGGCTTTTTGAGCAAAAAGACCTGAGGATTGAAGGCCGAATCATTGGCTTTGACGAATATATGAATTTGGTTTTGGATGATGCTGAGGAAGTCAATGTAAAGAAGAAGAGCAGGAAAACTTTGGGGAGGATACTGCTTAAAGGGGATAACATAACTCTGATGATGAACTC

Protein sequence

NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMNX

Homology

[Close]

BLAST of CsaV3_7G021700.1 vs. NCBI nr
Match: XP_022156313.1 (small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022156314.1 small nuclear ribonucleoprotein E-like [Momordica charantia])

HSP 1 Score: 141.4 bits (355), Expect = 3.1e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 60
          NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL
Sbjct: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 74

Query: 61 LKGDNITLMMN 72
          LKGDNITLMMN
Sbjct: 75 LKGDNITLMMN 85

[Close]

BLAST of CsaV3_7G021700.1 vs. NCBI nr
Match: XP_003523208.1 (small nuclear ribonucleoprotein E [Glycine max] >XP_003526883.1 small nuclear ribonucleoprotein E [Glycine max] >XP_004491225.1 small nuclear ribonucleoprotein E-like [Cicer arietinum] >XP_019436197.1 PREDICTED: small nuclear ribonucleoprotein E-like isoform X1 [Lupinus angustifolius] >XP_019442203.1 PREDICTED: small nuclear ribonucleoprotein E-like isoform X1 [Lupinus angustifolius] >XP_019454008.1 PREDICTED: small nuclear ribonucleoprotein E-like [Lupinus angustifolius] >XP_027332278.1 small nuclear ribonucleoprotein E-like isoform X2 [Abrus precatorius] >XP_028229604.1 small nuclear ribonucleoprotein E-like [Glycine soja] >XP_028236484.1 small nuclear ribonucleoprotein E-like [Glycine soja] >AFK38926.1 unknown [Lotus japonicus] >KAE9601683.1 putative small nuclear ribonucleoprotein E [Lupinus albus] >KAG5019470.1 hypothetical protein JHK87_015325 [Glycine soja] >KAG5031798.1 hypothetical protein JHK85_015780 [Glycine max] >KAG5035865.1 hypothetical protein JHK87_010775 [Glycine soja])

HSP 1 Score: 141.4 bits (355), Expect = 3.1e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 60
          NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL
Sbjct: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 74

Query: 61 LKGDNITLMMN 72
          LKGDNITLMMN
Sbjct: 75 LKGDNITLMMN 85

[Close]

BLAST of CsaV3_7G021700.1 vs. NCBI nr
Match: XP_004490635.1 (small nuclear ribonucleoprotein E-like [Cicer arietinum])

HSP 1 Score: 141.4 bits (355), Expect = 3.1e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 60
          NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL
Sbjct: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 74

Query: 61 LKGDNITLMMN 72
          LKGDNITLMMN
Sbjct: 75 LKGDNITLMMN 85

[Close]

BLAST of CsaV3_7G021700.1 vs. NCBI nr
Match: KHN09645.1 (Small nuclear ribonucleoprotein E [Glycine soja])

HSP 1 Score: 141.4 bits (355), Expect = 3.1e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 60
          NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL
Sbjct: 25 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 84

Query: 61 LKGDNITLMMN 72
          LKGDNITLMMN
Sbjct: 85 LKGDNITLMMN 95

[Close]

BLAST of CsaV3_7G021700.1 vs. NCBI nr
Match: XP_019436198.1 (PREDICTED: small nuclear ribonucleoprotein E-like isoform X2 [Lupinus angustifolius] >XP_019442208.1 PREDICTED: small nuclear ribonucleoprotein E-like isoform X2 [Lupinus angustifolius] >KAE9609830.1 putative small nuclear ribonucleoprotein E [Lupinus albus] >KAF1887590.1 hypothetical protein Lal_00040644 [Lupinus albus])

HSP 1 Score: 141.4 bits (355), Expect = 3.1e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 60
          NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL
Sbjct: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 74

Query: 61 LKGDNITLMMN 72
          LKGDNITLMMN
Sbjct: 75 LKGDNITLMMN 85

[Close]

BLAST of CsaV3_7G021700.1 vs. ExPASy Swiss-Prot
Match: A4FUI2 (Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.5e-24
Identity = 52/71 (73.24%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 60
          NLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+
Sbjct: 19 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 78

Query: 61 LKGDNITLMMN 72
          LKGDNITL+ +
Sbjct: 79 LKGDNITLLQS 89

[Close]

BLAST of CsaV3_7G021700.1 vs. ExPASy Swiss-Prot
Match: P62303 (Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.5e-24
Identity = 52/71 (73.24%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 60
          NLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+
Sbjct: 19 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 78

Query: 61 LKGDNITLMMN 72
          LKGDNITL+ +
Sbjct: 79 LKGDNITLLQS 89

[Close]

BLAST of CsaV3_7G021700.1 vs. ExPASy Swiss-Prot
Match: P62304 (Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.5e-24
Identity = 52/71 (73.24%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 60
          NLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+
Sbjct: 19 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 78

Query: 61 LKGDNITLMMN 72
          LKGDNITL+ +
Sbjct: 79 LKGDNITLLQS 89

[Close]

BLAST of CsaV3_7G021700.1 vs. ExPASy Swiss-Prot
Match: P62305 (Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.5e-24
Identity = 52/71 (73.24%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 60
          NLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+
Sbjct: 19 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 78

Query: 61 LKGDNITLMMN 72
          LKGDNITL+ +
Sbjct: 79 LKGDNITLLQS 89

[Close]

BLAST of CsaV3_7G021700.1 vs. ExPASy Swiss-Prot
Match: A1XQR9 (Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.5e-24
Identity = 52/71 (73.24%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 60
          NLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KSRK LGRI+
Sbjct: 19 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 78

Query: 61 LKGDNITLMMN 72
          LKGDNITL+ +
Sbjct: 79 LKGDNITLLQS 89

[Close]

BLAST of CsaV3_7G021700.1 vs. ExPASy TrEMBL
Match: A0A6A4Q7S7 (Small nuclear ribonucleoprotein E OS=Lupinus albus OX=3870 GN=Lal_00040644 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.5e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 60
          NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL
Sbjct: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 74

Query: 61 LKGDNITLMMN 72
          LKGDNITLMMN
Sbjct: 75 LKGDNITLMMN 85

[Close]

BLAST of CsaV3_7G021700.1 vs. ExPASy TrEMBL
Match: A0A445KAE2 (Small nuclear ribonucleoprotein E OS=Glycine soja OX=3848 GN=D0Y65_010367 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.5e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 60
          NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL
Sbjct: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 74

Query: 61 LKGDNITLMMN 72
          LKGDNITLMMN
Sbjct: 75 LKGDNITLMMN 85

[Close]

BLAST of CsaV3_7G021700.1 vs. ExPASy TrEMBL
Match: A0A6J1DT21 (Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111023239 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.5e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 60
          NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL
Sbjct: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 74

Query: 61 LKGDNITLMMN 72
          LKGDNITLMMN
Sbjct: 75 LKGDNITLMMN 85

[Close]

BLAST of CsaV3_7G021700.1 vs. ExPASy TrEMBL
Match: A0A394DG15 (Small nuclear ribonucleoprotein E OS=Lupinus angustifolius OX=3871 GN=TanjilG_09467 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.5e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 60
          NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL
Sbjct: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 74

Query: 61 LKGDNITLMMN 72
          LKGDNITLMMN
Sbjct: 75 LKGDNITLMMN 85

[Close]

BLAST of CsaV3_7G021700.1 vs. ExPASy TrEMBL
Match: I1KBP3 (Small nuclear ribonucleoprotein E OS=Glycine max OX=3847 GN=100500256 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.5e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 60
          NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL
Sbjct: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 74

Query: 61 LKGDNITLMMN 72
          LKGDNITLMMN
Sbjct: 75 LKGDNITLMMN 85

[Close]

BLAST of CsaV3_7G021700.1 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-31
Identity = 65/71 (91.55%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 60
          NLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KKK+RK LGRIL
Sbjct: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRKPLGRIL 74

Query: 61 LKGDNITLMMN 72
          LKGDNITLMMN
Sbjct: 75 LKGDNITLMMN 85

[Close]

BLAST of CsaV3_7G021700.1 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 130.2 bits (326), Expect = 6.7e-31
Identity = 64/71 (90.14%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRIL 60
          NLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK +RK LGRIL
Sbjct: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRKPLGRIL 74

Query: 61 LKGDNITLMMN 72
          LKGDNITLMMN
Sbjct: 75 LKGDNITLMMN 85

[Close]

BLAST of CsaV3_7G021700.1 vs. TAIR 10
Match: AT2G18740.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 104.0 bits (258), Expect = 5.2e-23
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 1  NLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLG 58
          NLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK +RK LG
Sbjct: 15 NLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRKPLG 71

[Close]

BLAST of CsaV3_7G021700.1 vs. TAIR 10
Match: AT5G48870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 44.3 bits (103), Expect = 4.9e-05
Identity = 26/71 (36.62%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 2  LIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKT--LGRI 61
          LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  +  + R+   L +I
Sbjct: 13 LIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKLDQI 72

Query: 62 LLKGDNITLMM 71
          LL G+NI +++
Sbjct: 73 LLNGNNIAILV 79

The following BLAST results are available for this feature:

BLAST of CsaV3_7G021700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156313.1	3.1e-30	100.00	small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022156314.1 sma...	[more]
XP_003523208.1	3.1e-30	100.00	small nuclear ribonucleoprotein E [Glycine max] >XP_003526883.1 small nuclear ri...	[more]
XP_004490635.1	3.1e-30	100.00	small nuclear ribonucleoprotein E-like [Cicer arietinum]	[more]
KHN09645.1	3.1e-30	100.00	Small nuclear ribonucleoprotein E [Glycine soja]	[more]
XP_019436198.1	3.1e-30	100.00	PREDICTED: small nuclear ribonucleoprotein E-like isoform X2 [Lupinus angustifol...	[more]

BLAST of CsaV3_7G021700.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FUI2	3.5e-24	73.24	Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1	[more]
P62303	3.5e-24	73.24	Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1	[more]
P62304	3.5e-24	73.24	Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1	[more]
P62305	3.5e-24	73.24	Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1	[more]
A1XQR9	3.5e-24	73.24	Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1	[more]

BLAST of CsaV3_7G021700.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A4Q7S7	1.5e-30	100.00	Small nuclear ribonucleoprotein E OS=Lupinus albus OX=3870 GN=Lal_00040644 PE=3 ...	[more]
A0A445KAE2	1.5e-30	100.00	Small nuclear ribonucleoprotein E OS=Glycine soja OX=3848 GN=D0Y65_010367 PE=3 S...	[more]
A0A6J1DT21	1.5e-30	100.00	Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111023239...	[more]
A0A394DG15	1.5e-30	100.00	Small nuclear ribonucleoprotein E OS=Lupinus angustifolius OX=3871 GN=TanjilG_09...	[more]
I1KBP3	1.5e-30	100.00	Small nuclear ribonucleoprotein E OS=Glycine max OX=3847 GN=100500256 PE=3 SV=1	[more]

BLAST of CsaV3_7G021700.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30330.1	1.8e-31	91.55	Small nuclear ribonucleoprotein family protein	[more]
AT2G18740.1	6.7e-31	90.14	Small nuclear ribonucleoprotein family protein	[more]
AT2G18740.2	5.2e-23	87.72	Small nuclear ribonucleoprotein family protein	[more]
AT5G48870.1	4.9e-05	36.62	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 5..71 e-value: 1.7E-17 score: 74.1
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 6..69 e-value: 3.6E-18 score: 65.0
None	No IPR available	GENE3D	2.30.30.100		coord: 1..71 e-value: 3.0E-34 score: 118.7
IPR027078	Small nuclear ribonucleoprotein E	PANTHER	PTHR11193	SMALL NUCLEAR RIBONUCLEOPROTEIN E	coord: 1..71
IPR027078	Small nuclear ribonucleoprotein E	CDD	cd01718	Sm_E	coord: 1..71 e-value: 9.961E-46 score: 138.456
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 2..69

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G021700	CsaV3_7G021700	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G021700.1.exon1	CsaV3_7G021700.1.exon1	exon
CsaV3_7G021700.1.exon2	CsaV3_7G021700.1.exon2	exon
CsaV3_7G021700.1.exon3	CsaV3_7G021700.1.exon3	exon
CsaV3_7G021700.1.exon4	CsaV3_7G021700.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G021700.1.cds1	CsaV3_7G021700.1.cds1	CDS
CsaV3_7G021700.1.cds2	CsaV3_7G021700.1.cds2	CDS
CsaV3_7G021700.1.cds3	CsaV3_7G021700.1.cds3	CDS
CsaV3_7G021700.1.cds4	CsaV3_7G021700.1.cds4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G021700.1	CsaV3_7G021700.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex