CsaV3_7G021100.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G021100.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr7: 9497469 .. 9497939 (-)
Sequence length	291
RNA-Seq Expression	CsaV3_7G021100.1
Synteny	CsaV3_7G021100.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACCAGAAGTGGCACTCCAACTGATGGGGTTTAACACAGCAAAGGACCTCTGGGAAGCCATACAAGATTTATTCGGAGTACAATTAAGGGCAGAGGAAGATTTTCTTAGGCACACATTTCAGACTACTCAAAAAGGTAATTCTAAGATGGAAGATTATTTGCACCATATGAAAACTAATGTTGATAACCTCGACCAAGCTGGGAGTCATGTTCCTCTTCATTCCTTAATTTCTCAGGTCATATTGGGGTTAGATGAAATTTACAACCCTGTAACCGCTGTTATTTAGGGAAAACCCACCACCTCTTAGCTAGATATGCAGTCAAAATTACTAATATTTGAGAAACGCCTTGAGCATCAAAACTCCCAAAAAATCCAGGTAATATTGTCCAAAACACCACTGTGAATATGGTTCAAAACCATGAGAATAATGATGCTCGACAACCTGGAAACTCATATCCACACAATA

mRNA sequence

ATGACACCAGAAGTGGCACTCCAACTGATGGGGTTTAACACAGCAAAGGACCTCTGGGAAGCCATACAAGATTTATTCGGAGTACAATTAAGGGCAGAGGAAGATTTTCTTAGGCACACATTTCAGACTACTCAAAAAGGTAATTCTAAGATGGAAGATTATTTGCACCATATGAAAACTAATGTTGATAACCTCGACCAAGCTGGGAGTCATGTTCCTCTTCATTCCTTAATTTCTCAGGTCATATTGGGGTTAGATGAAATTTACAACCCTGTAACCGCTGTTATTTAG

Coding sequence (CDS)

ATGACACCAGAAGTGGCACTCCAACTGATGGGGTTTAACACAGCAAAGGACCTCTGGGAAGCCATACAAGATTTATTCGGAGTACAATTAAGGGCAGAGGAAGATTTTCTTAGGCACACATTTCAGACTACTCAAAAAGGTAATTCTAAGATGGAAGATTATTTGCACCATATGAAAACTAATGTTGATAACCTCGACCAAGCTGGGAGTCATGTTCCTCTTCATTCCTTAATTTCTCAGGTCATATTGGGGTTAGATGAAATTTACAACCCTGTAACCGCTGTTATTTAG

Protein sequence

MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKTNVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI*

Homology

[Close]

BLAST of CsaV3_7G021100.1 vs. NCBI nr
Match: KGN44003.1 (hypothetical protein Csa_016232 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 1.9e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
          MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT
Sbjct: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60

Query: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 97
          NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI
Sbjct: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 96

[Close]

BLAST of CsaV3_7G021100.1 vs. NCBI nr
Match: KAA0060208.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYJ95582.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 4.1e-33
Identity = 75/91 (82.42%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1   MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
           MT EVA QLMGFNTAKDL EAIQDLFGVQ R EEDFLRHTFQTT+KGNSKMEDYL  MKT
Sbjct: 76  MTAEVAFQLMGFNTAKDLEEAIQDLFGVQSRGEEDFLRHTFQTTRKGNSKMEDYLRIMKT 135

Query: 61  NVDNLDQAGSHVPLHSLISQVILGLDEIYNP 92
           N +NL QAGS +PL SLISQV+LGLDE+YNP
Sbjct: 136 NAENLGQAGSPIPLRSLISQVLLGLDEVYNP 166

[Close]

BLAST of CsaV3_7G021100.1 vs. NCBI nr
Match: KAA0057475.1 (uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK30171.1 uncharacterized protein E5676_scaffold216G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 7.0e-33
Identity = 75/96 (78.12%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 1   MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
           M P+VALQLMGFNTAKDLWEAIQ+LFG++ RAEE FLRHTFQTT++GN KMEDYL  MK 
Sbjct: 87  MVPDVALQLMGFNTAKDLWEAIQNLFGIKSRAEEYFLRHTFQTTREGNYKMEDYLRIMKI 146

Query: 61  NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 97
           N DNL QAGS VP   LISQV+LGLDE+YNPVTAVI
Sbjct: 147 NADNLGQAGSPVPHRYLISQVLLGLDEVYNPVTAVI 182

[Close]

BLAST of CsaV3_7G021100.1 vs. NCBI nr
Match: KGN65684.1 (hypothetical protein Csa_019689 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-29
Identity = 67/96 (69.79%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 1   MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
           +TPEV +QL+GF  AKD+WEA  D FGV+ RAEEDFLR TFQTT+KGNS MEDYL  MKT
Sbjct: 26  VTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKT 85

Query: 61  NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 97
           N DNL QA S +P  +LISQV+LGLDE+YNPV  VI
Sbjct: 86  NADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVI 121

[Close]

BLAST of CsaV3_7G021100.1 vs. NCBI nr
Match: KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28
Identity = 67/96 (69.79%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 1   MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
           MTP+VA+QLMGF   +DLW+A QD FGVQ RAEEDFLR   QTT+KGN+KME+YL  MKT
Sbjct: 123 MTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKT 182

Query: 61  NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 97
           NVDNL Q GS VP  +LISQV+LGLDE+YN V  VI
Sbjct: 183 NVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVI 218

[Close]

BLAST of CsaV3_7G021100.1 vs. ExPASy TrEMBL
Match: A0A0A0K3F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G091720 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 9.2e-47
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
          MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT
Sbjct: 1  MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60

Query: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 97
          NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI
Sbjct: 61 NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 96

[Close]

BLAST of CsaV3_7G021100.1 vs. ExPASy TrEMBL
Match: A0A5A7UY76 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00940 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.0e-33
Identity = 75/91 (82.42%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1   MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
           MT EVA QLMGFNTAKDL EAIQDLFGVQ R EEDFLRHTFQTT+KGNSKMEDYL  MKT
Sbjct: 76  MTAEVAFQLMGFNTAKDLEEAIQDLFGVQSRGEEDFLRHTFQTTRKGNSKMEDYLRIMKT 135

Query: 61  NVDNLDQAGSHVPLHSLISQVILGLDEIYNP 92
           N +NL QAGS +PL SLISQV+LGLDE+YNP
Sbjct: 136 NAENLGQAGSPIPLRSLISQVLLGLDEVYNP 166

[Close]

BLAST of CsaV3_7G021100.1 vs. ExPASy TrEMBL
Match: A0A5D3E3L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001590 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.4e-33
Identity = 75/96 (78.12%), Postives = 83/96 (86.46%), Query Frame = 0


Query: 1   MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
           M P+VALQLMGFNTAKDLWEAIQ+LFG++ RAEE FLRHTFQTT++GN KMEDYL  MK 
Sbjct: 87  MVPDVALQLMGFNTAKDLWEAIQNLFGIKSRAEEYFLRHTFQTTREGNYKMEDYLRIMKI 146

Query: 61  NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 97
           N DNL QAGS VP   LISQV+LGLDE+YNPVTAVI
Sbjct: 147 NADNLGQAGSPVPHRYLISQVLLGLDEVYNPVTAVI 182

[Close]

BLAST of CsaV3_7G021100.1 vs. ExPASy TrEMBL
Match: A0A0A0LXB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.3e-29
Identity = 67/96 (69.79%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 1   MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
           +TPEV +QL+GF  AKD+WEA  D FGV+ RAEEDFLR TFQTT+KGNS MEDYL  MKT
Sbjct: 26  VTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLRIMKT 85

Query: 61  NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 97
           N DNL QA S +P  +LISQV+LGLDE+YNPV  VI
Sbjct: 86  NADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVI 121

[Close]

BLAST of CsaV3_7G021100.1 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.1e-28
Identity = 67/96 (69.79%), Postives = 77/96 (80.21%), Query Frame = 0


Query: 1   MTPEVALQLMGFNTAKDLWEAIQDLFGVQLRAEEDFLRHTFQTTQKGNSKMEDYLHHMKT 60
           MTP+VA+QLMGF   +DLW+A QD FGVQ RAEEDFLR   QTT+KGN+KME+YL  MKT
Sbjct: 123 MTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMKT 182

Query: 61  NVDNLDQAGSHVPLHSLISQVILGLDEIYNPVTAVI 97
           NVDNL Q GS VP  +LISQV+LGLDE+YN V  VI
Sbjct: 183 NVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVI 218

The following BLAST results are available for this feature:

BLAST of CsaV3_7G021100.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44003.1	1.9e-46	100.00	hypothetical protein Csa_016232 [Cucumis sativus]	[more]
KAA0060208.1	4.1e-33	82.42	Integrase, catalytic core [Cucumis melo var. makuwa] >TYJ95582.1 Integrase, cata...	[more]
KAA0057475.1	7.0e-33	78.13	uncharacterized protein E6C27_scaffold280G003560 [Cucumis melo var. makuwa] >TYK...	[more]
KGN65684.1	2.7e-29	69.79	hypothetical protein Csa_019689 [Cucumis sativus]	[more]
KAA0026100.1	2.3e-28	69.79	uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_7G021100.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G021100.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3F9	9.2e-47	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G091720 PE=4 SV=1	[more]
A0A5A7UY76	2.0e-33	82.42	Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3E3L7	3.4e-33	78.13	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LXB7	1.3e-29	69.79	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1	[more]
A0A5A7SIT7	1.1e-28	69.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of CsaV3_7G021100.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 2..91 e-value: 1.8E-6 score: 27.8

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G021100	CsaV3_7G021100	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G021100.1.exon1	CsaV3_7G021100.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G021100.1.cds1	CsaV3_7G021100.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G021100.1	CsaV3_7G021100.1-protein	polypeptide