CsaV3_7G020970.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G020970.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	chr7: 9304772 .. 9304998 (-)
Sequence length	227
RNA-Seq Expression	CsaV3_7G020970.1
Synteny	CsaV3_7G020970.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTGCAATGCCACAAAATACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGAAGCACCAATTGATGCTACGGAGTACAGAAGCATCGTCGTTGTTGTCTTAGACTACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAG

mRNA sequence

ATGGCTGATTGCAATGCCACAAAATACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGAAGCACCAATTGATGCTACGGAGTACAGAAGCATCGTCGTTGTTGTCTTAGACTACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAG

Coding sequence (CDS)

ATGGCTGATTGCAATGCCACAAAATACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGAAGCACCAATTGATGCTACGGAGTACAGAAGCATCGTCGTTGTTGTCTTAGACTACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAG

Protein sequence

MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYMERPTTMHYKVVKQILX

Homology

[Close]

BLAST of CsaV3_7G020970.1 vs. NCBI nr
Match: KGN44333.2 (hypothetical protein Csa_016167, partial [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 8.4e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
          MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM
Sbjct: 1  MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60

Query: 61 ERPTTMHYKVVKQIL 76
          ERPTTMHYKVVKQIL
Sbjct: 61 ERPTTMHYKVVKQIL 75

[Close]

BLAST of CsaV3_7G020970.1 vs. NCBI nr
Match: XP_031745072.1 (secreted RxLR effector protein 161-like [Cucumis sativus])

HSP 1 Score: 153.3 bits (386), Expect = 8.4e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
          MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM
Sbjct: 1  MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60

Query: 61 ERPTTMHYKVVKQIL 76
          ERPTTMHYKVVKQIL
Sbjct: 61 ERPTTMHYKVVKQIL 75

[Close]

BLAST of CsaV3_7G020970.1 vs. NCBI nr
Match: KAE8648201.1 (hypothetical protein Csa_018467, partial [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 6.3e-29
Identity = 70/75 (93.33%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
          MADCNATKYPMEPKAQLHKDTE APIDATEYRSI V  L YLLNTRPDLSYVVGMASRYM
Sbjct: 3  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSI-VGCLRYLLNTRPDLSYVVGMASRYM 62

Query: 61 ERPTTMHYKVVKQIL 76
          ERPTTMHYKVVKQIL
Sbjct: 63 ERPTTMHYKVVKQIL 76

[Close]

BLAST of CsaV3_7G020970.1 vs. NCBI nr
Match: KAE8646020.1 (hypothetical protein Csa_015698 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28
Identity = 69/75 (92.00%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
          MADCNATKYPMEPKAQLHKDTE APIDATEYRSI V  L YLLNTRPDLSY VGMASRYM
Sbjct: 1  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSI-VGCLRYLLNTRPDLSYAVGMASRYM 60

Query: 61 ERPTTMHYKVVKQIL 76
          ERPTTMHYKVVKQIL
Sbjct: 61 ERPTTMHYKVVKQIL 74

[Close]

BLAST of CsaV3_7G020970.1 vs. NCBI nr
Match: KAE8652919.1 (hypothetical protein Csa_004527, partial [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28
Identity = 69/75 (92.00%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
          MADCNATKYPMEPKAQLHKDTE APIDATEYRSI V  L YLLNTRPDLSY VGMASRYM
Sbjct: 1  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSI-VGCLRYLLNTRPDLSYAVGMASRYM 60

Query: 61 ERPTTMHYKVVKQIL 76
          ERPTTMHYKVVKQIL
Sbjct: 61 ERPTTMHYKVVKQIL 74

[Close]

BLAST of CsaV3_7G020970.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.0e-07
Identity = 33/70 (47.14%), Postives = 39/70 (55.71%), Query Frame = 0


Query: 6    ATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYMERPTT 65
            AT     PK  LH  T+    D TEYR I V  L YL  TRPDLSY V   S+YM  PT 
Sbjct: 1205 ATPMATSPKLTLHSGTKLP--DPTEYRGI-VGSLQYLAFTRPDLSYAVNRLSQYMHMPTD 1264

Query: 66   MHYKVVKQIL 76
             H+  +K++L
Sbjct: 1265 DHWNALKRVL 1271

[Close]

BLAST of CsaV3_7G020970.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-05
Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 0


Query: 10   PMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYMERPTTMHYK 69
            PM P  +L   +     D TEYR I V  L YL  TRPD+SY V   S++M  PT  H +
Sbjct: 1224 PMAPSPKLSLYSGTKLTDPTEYRGI-VGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQ 1283

Query: 70   VVKQIL 76
             +K+IL
Sbjct: 1284 ALKRIL 1288

[Close]

BLAST of CsaV3_7G020970.1 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.5e-04
Identity = 27/75 (36.00%), Postives = 40/75 (53.33%), Query Frame = 0


Query: 1   MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
           M DC     P+  K      T + P D +++RSI V  L YL  TRPD+SY V +  + M
Sbjct: 71  MLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSI-VGALQYLTLTRPDISYAVNIVCQRM 130

Query: 61  ERPTTMHYKVVKQIL 76
             PT   + ++K++L
Sbjct: 131 HEPTLADFDLLKRVL 143

[Close]

BLAST of CsaV3_7G020970.1 vs. ExPASy TrEMBL
Match: A0A5K0VEQ6 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS1129 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.4e-18
Identity = 49/75 (65.33%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 1   MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
           M DCN TK PMEP++QL+KD E  P+DATEYR   +  L YL++TRPDL Y VG+ASR+M
Sbjct: 202 MFDCNPTKIPMEPRSQLNKDPEGQPVDATEYRRF-IGCLRYLVHTRPDLLYAVGVASRFM 261

Query: 61  ERPTTMHYKVVKQIL 76
           ERPT MH+K VKQIL
Sbjct: 262 ERPTVMHHKAVKQIL 275

[Close]

BLAST of CsaV3_7G020970.1 vs. ExPASy TrEMBL
Match: A0A0A9FJ50 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.4e-18
Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 1   MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
           M D N TKYPME KAQ+HKD++  P+DATEYR  VV  L YLL+TRPDLS+ VG+ASR+M
Sbjct: 81  MEDYNPTKYPMEHKAQVHKDSDGQPVDATEYRR-VVGCLRYLLHTRPDLSHAVGVASRHM 140

Query: 61  ERPTTMHYKVVKQIL 76
           ERPT MH K+VKQ+L
Sbjct: 141 ERPTVMHQKLVKQML 154

[Close]

BLAST of CsaV3_7G020970.1 vs. ExPASy TrEMBL
Match: Q0J8A6 (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.0e-18
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 1    MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
            M  CN T  PMEP++ LHKD +  PIDATEYR  V+  L YLL+TRPDLSY VG+ASR+M
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRR-VIGCLRYLLHTRPDLSYAVGVASRFM 1232

Query: 61   ERPTTMHYKVVKQIL 76
            ERPTTMH K VK IL
Sbjct: 1233 ERPTTMHLKAVKMIL 1246

[Close]

BLAST of CsaV3_7G020970.1 vs. ExPASy TrEMBL
Match: B8BDZ6 (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.0e-18
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 1    MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
            M  CN T  PMEP++ LHKD +  PIDATEYR  V+  L YLL+TRPDLSY VG+ASR+M
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRR-VIGCLRYLLHTRPDLSYAVGVASRFM 1232

Query: 61   ERPTTMHYKVVKQIL 76
            ERPTTMH K VK IL
Sbjct: 1233 ERPTTMHLKAVKMIL 1246

[Close]

BLAST of CsaV3_7G020970.1 vs. ExPASy TrEMBL
Match: A0A0P0XB91 (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 7.0e-18
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 0


Query: 1    MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
            M  CN T  PMEP++ LHKD +  PIDATEYR  V+  L YLL+TRPDLSY VG+ASR+M
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRR-VIGCLRYLLHTRPDLSYAVGVASRFM 1232

Query: 61   ERPTTMHYKVVKQIL 76
            ERPTTMH K VK IL
Sbjct: 1233 ERPTTMHLKAVKMIL 1246

[Close]

BLAST of CsaV3_7G020970.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.0e-05
Identity = 27/75 (36.00%), Postives = 40/75 (53.33%), Query Frame = 0


Query: 1   MADCNATKYPMEPKAQLHKDTEEAPIDATEYRSIVVVVLDYLLNTRPDLSYVVGMASRYM 60
           M DC     P+  K      T + P D +++RSI V  L YL  TRPD+SY V +  + M
Sbjct: 71  MLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSI-VGALQYLTLTRPDISYAVNIVCQRM 130

Query: 61  ERPTTMHYKVVKQIL 76
             PT   + ++K++L
Sbjct: 131 HEPTLADFDLLKRVL 143

The following BLAST results are available for this feature:

BLAST of CsaV3_7G020970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44333.2	8.4e-34	100.00	hypothetical protein Csa_016167, partial [Cucumis sativus]	[more]
XP_031745072.1	8.4e-34	100.00	secreted RxLR effector protein 161-like [Cucumis sativus]	[more]
KAE8648201.1	6.3e-29	93.33	hypothetical protein Csa_018467, partial [Cucumis sativus]	[more]
KAE8646020.1	1.8e-28	92.00	hypothetical protein Csa_015698 [Cucumis sativus]	[more]
KAE8652919.1	1.8e-28	92.00	hypothetical protein Csa_004527, partial [Cucumis sativus]	[more]

BLAST of CsaV3_7G020970.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	7.0e-07	47.14	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.7e-05	43.94	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92519	1.5e-04	36.00	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CsaV3_7G020970.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5K0VEQ6	2.4e-18	65.33	Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Nym...	[more]
A0A0A9FJ50	2.4e-18	68.00	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Arundo donax O...	[more]
Q0J8A6	7.0e-18	66.67	Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE...	[more]
B8BDZ6	7.0e-18	66.67	Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4...	[more]
A0A0P0XB91	7.0e-18	66.67	Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE...	[more]

BLAST of CsaV3_7G020970.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	1.0e-05	36.00	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G020970	CsaV3_7G020970	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G020970.1.exon1	CsaV3_7G020970.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G020970.1.cds1	CsaV3_7G020970.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G020970.1	CsaV3_7G020970.1-protein	polypeptide