CsaV3_7G008490.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G008490.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	40S ribosomal protein S16
Location	chr7: 5281660 .. 5282965 (+)
Sequence length	582
RNA-Seq Expression	CsaV3_7G008490.1
Synteny	CsaV3_7G008490.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTGGAGGTGATGAATTGGGCCGGACACTAAAAAATGCGGCCCAATGTATGACAAAACCCTAATTTTGACATTCCATATAAATTCTGCGTTTCAATTTTGTCCTTCTTCCACTCTCACAACTTCCTCTCTCTCAGAGTTTAGGGTTTGTAGTAGCAGCAGGCAGGCGGAACCAGGTAAAAGAAAATCAATCATGGCTGCTCCGATTGAGTCGGTTCAATGTTTCGGCCGGAAAAAGACGGCGGTTGCAGTCACCTACTGCAAGCGCGGTAGAGGTTTGATTAAGATCAATGGATGCCCAATCGAACTCGTGGAGCCAGAGATCCTCCGTTTCAAGGCTTATGAGCCTATCCTCCTCCTTGGACGTCACAGGTTCTCTGGTGTCGACATGCGTATCAGAGTAAAGGGTGGAGGTCACACCTCGCAGATTTACGCCATCCGTCAGAGTATCGCCAAAGCCTTGGTCGCGTTCTACCAGAAGTACGTGGATGAGCAGAGCAAGAAGGAAATCAAAGACATTCTTGTCAGGTACGACAGGACTTTACTCGTCGCCGATCCCCGACGCTGCGAGCCCAAGAAGTTTGGTGGTCGTGGAGCTCGTGCCAGGTTCCAGAAATCTTACCGTTGAATCGTTTATCCATTTTGGAAAAGACTTTGTGGTGCTGGATTTTTGCTGCTTTTCTTCTTTTATGCGTTTGAATTTACAAAGTTGTTTTTTGTGTTTAACTGTTCTATCTATTTTCTCATAAAATTAGATTTTTTGTCCTAATGGTTTAGACTCTTTTGCTATTATATTACTCGGTATCGGAATACTTTTAGTTAATTGGAAACCTGGATTTAGAATAGCATCATGAATGAATGGCATTGCTTATCTTTAGAATAGCATTCTGGCAATTTTTAAGTGTTAGGTGAATGAAGTTCTTGATTAAGCGGTTAGTTTTAGTTGGAAAACTCTTGAGTTGTGTGTGTTATTTCATGGCACATCTCTGTTTCATTGACTATACAACCATTGTGCCTGATCGATACTTTTGTTTCACAGTTCATTCTTTTGCATATGTATTTGATTATGACTTCGTTCTATTTGTGTTGGGTCATTTATATATCACGAGTTAAACTTGAATGCTTCTTCTATCAATGTGTACTCATCGTTCAATGATTTCTTTCCTCATTATAATTCTTATGCTGTAGCTCTCATTGAGTGTAACTTTGTATAGATTTAGAAACTATGGGATTTGAAATTGAATTAATTTTGTAATTTTGTATTCCAATGCCTGTCCTGAACCCTGAAAATTGTTAAAACTTGT

mRNA sequence

ATGTATGACAAAACCCTAATTTTGACATTCCATATAAATTCTGCGTTTCAATTTTGTCCTTCTTCCACTCTCACAACTTCCTCTCTCTCAGAGTTTAGGGTTTGTAGTAGCAGCAGGCAGGCGGAACCAGGTAAAAGAAAATCAATCATGGCTGCTCCGATTGAGTCGGTTCAATGTTTCGGCCGGAAAAAGACGGCGGTTGCAGTCACCTACTGCAAGCGCGGTAGAGGTTTGATTAAGATCAATGGATGCCCAATCGAACTCGTGGAGCCAGAGATCCTCCGTTTCAAGGCTTATGAGCCTATCCTCCTCCTTGGACGTCACAGGTTCTCTGGTGTCGACATGCGTATCAGAGTAAAGGGTGGAGGTCACACCTCGCAGATTTACGCCATCCGTCAGAGTATCGCCAAAGCCTTGGTCGCGTTCTACCAGAAGTACGTGGATGAGCAGAGCAAGAAGGAAATCAAAGACATTCTTGTCAGGTACGACAGGACTTTACTCGTCGCCGATCCCCGACGCTGCGAGCCCAAGAAGTTTGGTGGTCGTGGAGCTCGTGCCAGGTTCCAGAAATCTTACCGTTGA

Coding sequence (CDS)

ATGTATGACAAAACCCTAATTTTGACATTCCATATAAATTCTGCGTTTCAATTTTGTCCTTCTTCCACTCTCACAACTTCCTCTCTCTCAGAGTTTAGGGTTTGTAGTAGCAGCAGGCAGGCGGAACCAGGTAAAAGAAAATCAATCATGGCTGCTCCGATTGAGTCGGTTCAATGTTTCGGCCGGAAAAAGACGGCGGTTGCAGTCACCTACTGCAAGCGCGGTAGAGGTTTGATTAAGATCAATGGATGCCCAATCGAACTCGTGGAGCCAGAGATCCTCCGTTTCAAGGCTTATGAGCCTATCCTCCTCCTTGGACGTCACAGGTTCTCTGGTGTCGACATGCGTATCAGAGTAAAGGGTGGAGGTCACACCTCGCAGATTTACGCCATCCGTCAGAGTATCGCCAAAGCCTTGGTCGCGTTCTACCAGAAGTACGTGGATGAGCAGAGCAAGAAGGAAATCAAAGACATTCTTGTCAGGTACGACAGGACTTTACTCGTCGCCGATCCCCGACGCTGCGAGCCCAAGAAGTTTGGTGGTCGTGGAGCTCGTGCCAGGTTCCAGAAATCTTACCGTTGA

Protein sequence

MYDKTLILTFHINSAFQFCPSSTLTTSSLSEFRVCSSSRQAEPGKRKSIMAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR*

Homology

[Close]

BLAST of CsaV3_7G008490.1 vs. NCBI nr
Match: KAE8645860.1 (hypothetical protein Csa_017052 [Cucumis sativus])

HSP 1 Score: 383.6 bits (984), Expect = 9.8e-103
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MYDKTLILTFHINSAFQFCPSSTLTTSSLSEFRVCSSSRQAEPGKRKSIMAAPIESVQCF 60
           MYDKTLILTFHINSAFQFCPSSTLTTSSLSEFRVCSSSRQAEPGKRKSIMAAPIESVQCF
Sbjct: 1   MYDKTLILTFHINSAFQFCPSSTLTTSSLSEFRVCSSSRQAEPGKRKSIMAAPIESVQCF 60

Query: 61  GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVK 120
           GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVK
Sbjct: 61  GRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVK 120

Query: 121 GGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFG 180
           GGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFG
Sbjct: 121 GGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFG 180

Query: 181 GRGARARFQKSYR 194
           GRGARARFQKSYR
Sbjct: 181 GRGARARFQKSYR 193

[Close]

BLAST of CsaV3_7G008490.1 vs. NCBI nr
Match: XP_004136973.1 (40S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 40S ribosomal protein S16 [Cucumis sativus] >XP_004149967.1 40S ribosomal protein S16 [Cucumis sativus] >XP_008454961.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456099.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_008456141.1 PREDICTED: 40S ribosomal protein S16 [Cucumis melo] >XP_022136342.1 40S ribosomal protein S16 [Momordica charantia] >XP_022149129.1 40S ribosomal protein S16 [Momordica charantia] >XP_022927908.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022943042.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022943043.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022952362.1 40S ribosomal protein S16-like [Cucurbita moschata] >XP_022972375.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_022983243.1 40S ribosomal protein S16-like [Cucurbita maxima] >XP_023535994.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >XP_023553863.1 40S ribosomal protein S16-like [Cucurbita pepo subsp. pepo] >XP_038877987.1 40S ribosomal protein S16 [Benincasa hispida] >XP_038880326.1 40S ribosomal protein S16 [Benincasa hispida] >XP_038886975.1 40S ribosomal protein S16 [Benincasa hispida] >KAA0031306.1 40S ribosomal protein S16 [Cucumis melo var. makuwa] >KAG6571970.1 40S ribosomal protein S16, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011649.1 40S ribosomal protein S16, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAA0037136.1 40S ribosomal protein S16 [Cucumis melo var. makuwa] >KAA0039084.1 40S ribosomal protein S16 [Cucumis melo var. makuwa])

HSP 1 Score: 291.2 bits (744), Expect = 6.6e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 170 DPRRCEPKKFGGRGARARFQKSYR 194
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of CsaV3_7G008490.1 vs. NCBI nr
Match: XP_022149351.1 (40S ribosomal protein S16-like [Momordica charantia])

HSP 1 Score: 290.8 bits (743), Expect = 8.6e-75
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIEL+EPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELIEPEILRFKAYEPILLLGRHR 60

Query: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 170 DPRRCEPKKFGGRGARARFQKSYR 194
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of CsaV3_7G008490.1 vs. NCBI nr
Match: XP_022989000.1 (40S ribosomal protein S16-like [Cucurbita maxima])

HSP 1 Score: 290.0 bits (741), Expect = 1.5e-74
Identity = 143/144 (99.31%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109
           MA+PIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MASPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 170 DPRRCEPKKFGGRGARARFQKSYR 194
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of CsaV3_7G008490.1 vs. NCBI nr
Match: XP_040987369.1 (40S ribosomal protein S16 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 289.7 bits (740), Expect = 1.9e-74
Identity = 142/144 (98.61%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109
           MAAP+ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPVESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169
           F+GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 170 DPRRCEPKKFGGRGARARFQKSYR 194
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of CsaV3_7G008490.1 vs. ExPASy Swiss-Prot
Match: P46293 (40S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 5.4e-72
Identity = 135/140 (96.43%), Postives = 137/140 (97.86%), Query Frame = 0


Query: 54  IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGV 113
           IESVQCFGRKKTAVAVT+CKRGRGLIKINGCPIELVEPEILRFKA EPILLLGR RF+GV
Sbjct: 6   IESVQCFGRKKTAVAVTHCKRGRGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGV 65

Query: 114 DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRR 173
           DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILV YDRTLLVADPRR
Sbjct: 66  DMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRR 125

Query: 174 CEPKKFGGRGARARFQKSYR 194
           CEPKKFGGRGARARFQKSYR
Sbjct: 126 CEPKKFGGRGARARFQKSYR 145

[Close]

BLAST of CsaV3_7G008490.1 vs. ExPASy Swiss-Prot
Match: O22647 (40S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-68
Identity = 128/145 (88.28%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 50  MAAP-IESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRH 109
           MA P  ESVQCFGRKKTAVAVT+CKRGRGLIK+NG PIELV+PEILR+KA+EPILLLGRH
Sbjct: 1   MATPATESVQCFGRKKTAVAVTHCKRGRGLIKVNGSPIELVKPEILRYKAFEPILLLGRH 60

Query: 110 RFSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLV 169
           RF GVDMRIRV+GGG TSQIYAIRQSIAKALVA+YQKYVDEQ+KKE+KDIL+RYDRTLLV
Sbjct: 61  RFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLV 120

Query: 170 ADPRRCEPKKFGGRGARARFQKSYR 194
           ADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct: 121 ADPRRCEPKKFGGRGARSRFQKSYR 145

[Close]

BLAST of CsaV3_7G008490.1 vs. ExPASy Swiss-Prot
Match: Q9SK22 (40S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.6e-68
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 55  ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 114
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 115 MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 174
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 175 EPKKFGGRGARARFQKSYR 194
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of CsaV3_7G008490.1 vs. ExPASy Swiss-Prot
Match: Q42340 (40S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.1e-68
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 55  ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 114
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 115 MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 174
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 175 EPKKFGGRGARARFQKSYR 194
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of CsaV3_7G008490.1 vs. ExPASy Swiss-Prot
Match: Q9XEK7 (40S ribosomal protein S16 OS=Syntrichia ruralis OX=38588 GN=RPS16 PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 9.9e-66
Identity = 122/142 (85.92%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 52  APIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFS 111
           A +ESVQCFGRKKTAVAVTYC+RGRGLI++   PIELVEPEILR+KA+EP+LLLGR +F+
Sbjct: 2   AAVESVQCFGRKKTAVAVTYCRRGRGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFA 61

Query: 112 GVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADP 171
           GVDMRIRVKGGG+TSQIYAIRQSIAKALVA++QKYVDEQSKKEIKD+L+RYDRTLLVADP
Sbjct: 62  GVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADP 121

Query: 172 RRCEPKKFGGRGARARFQKSYR 194
           RRCEPKKFGGRGAR+RFQKSYR
Sbjct: 122 RRCEPKKFGGRGARSRFQKSYR 142

[Close]

BLAST of CsaV3_7G008490.1 vs. ExPASy TrEMBL
Match: A0A5B7BKA1 (Putative Ribosomal protein S5 domain 2-like superfamily protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_038618 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.8e-76
Identity = 154/188 (81.91%), Postives = 164/188 (87.23%), Query Frame = 0


Query: 12  INSAFQFCPSSTLTTSSLSE-----FRVCSSSR-QAEPGKRKSIMAAPIESVQCFGRKKT 71
           ++ AFQF P  ++   SL +       V SS R + E     +IMAAPIESVQCFGRKKT
Sbjct: 15  LSFAFQFLPKRSVNLLSLFDKPYALISVASSPRVRIEREATPAIMAAPIESVQCFGRKKT 74

Query: 72  AVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHT 131
           AVAVTYCKRGRGLIKINGCPIELVEPEILR+KAYEPILLLGRHRF+GVDMRIRVKGGGHT
Sbjct: 75  AVAVTYCKRGRGLIKINGCPIELVEPEILRYKAYEPILLLGRHRFAGVDMRIRVKGGGHT 134

Query: 132 SQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR 191
           SQIYAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR
Sbjct: 135 SQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR 194

Query: 192 ARFQKSYR 194
           ARFQKSYR
Sbjct: 195 ARFQKSYR 202

[Close]

BLAST of CsaV3_7G008490.1 vs. ExPASy TrEMBL
Match: A0A5B7BR90 (Putative Ribosomal protein S5 domain 2-like superfamily protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_037217 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 8.4e-76
Identity = 153/188 (81.38%), Postives = 164/188 (87.23%), Query Frame = 0


Query: 12  INSAFQFCPSSTLTTSSLSE-----FRVCSSSR-QAEPGKRKSIMAAPIESVQCFGRKKT 71
           ++ +FQF P  ++   SL +       V SS R + E     +IMAAPIESVQCFGRKKT
Sbjct: 4   LSFSFQFLPKRSVNLLSLFDKPYALISVASSPRVRIEREATPAIMAAPIESVQCFGRKKT 63

Query: 72  AVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVDMRIRVKGGGHT 131
           AVAVTYCKRGRGLIKINGCPIELVEPEILR+KAYEPILLLGRHRF+GVDMRIRVKGGGHT
Sbjct: 64  AVAVTYCKRGRGLIKINGCPIELVEPEILRYKAYEPILLLGRHRFAGVDMRIRVKGGGHT 123

Query: 132 SQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR 191
           SQIYAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR
Sbjct: 124 SQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGAR 183

Query: 192 ARFQKSYR 194
           ARFQKSYR
Sbjct: 184 ARFQKSYR 191

[Close]

BLAST of CsaV3_7G008490.1 vs. ExPASy TrEMBL
Match: A0A6J1J781 (40S ribosomal protein S16-like OS=Cucurbita maxima OX=3661 GN=LOC111481879 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.2e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 170 DPRRCEPKKFGGRGARARFQKSYR 194
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of CsaV3_7G008490.1 vs. ExPASy TrEMBL
Match: A0A0A0L6F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.2e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 170 DPRRCEPKKFGGRGARARFQKSYR 194
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of CsaV3_7G008490.1 vs. ExPASy TrEMBL
Match: A0A1S3C210 (40S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103496134 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.2e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 50  MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 109
           MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR
Sbjct: 1   MAAPIESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHR 60

Query: 110 FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 169
           FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA
Sbjct: 61  FSGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVA 120

Query: 170 DPRRCEPKKFGGRGARARFQKSYR 194
           DPRRCEPKKFGGRGARARFQKSYR
Sbjct: 121 DPRRCEPKKFGGRGARARFQKSYR 144

[Close]

BLAST of CsaV3_7G008490.1 vs. TAIR 10
Match: AT2G09990.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-69
Identity = 124/139 (89.21%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 55  ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 114
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EPILLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVN 67

Query: 115 MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 174
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 175 EPKKFGGRGARARFQKSYR 194
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of CsaV3_7G008490.1 vs. TAIR 10
Match: AT5G18380.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-69
Identity = 123/139 (88.49%), Postives = 135/139 (97.12%), Query Frame = 0


Query: 55  ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 114
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 115 MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 174
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 175 EPKKFGGRGARARFQKSYR 194
           EPKKFGGRGAR+R+QKSYR
Sbjct: 128 EPKKFGGRGARSRYQKSYR 146

[Close]

BLAST of CsaV3_7G008490.1 vs. TAIR 10
Match: AT3G04230.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 246.9 bits (629), Expect = 1.3e-65
Identity = 118/139 (84.89%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 55  ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 114
           ESVQCFGRKKTA AVTYCKRG G+IK+NG PIEL +PEILRFK +EP+LLLG+HRF+GVD
Sbjct: 8   ESVQCFGRKKTATAVTYCKRGSGMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVD 67

Query: 115 MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 174
           MRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRC
Sbjct: 68  MRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRC 127

Query: 175 EPKKFGGRGARARFQKSYR 194
           E KKFGG GARARFQKSYR
Sbjct: 128 ESKKFGGPGARARFQKSYR 146

[Close]

BLAST of CsaV3_7G008490.1 vs. TAIR 10
Match: AT5G18380.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 226.9 bits (577), Expect = 1.4e-59
Identity = 108/125 (86.40%), Postives = 119/125 (95.20%), Query Frame = 0


Query: 55  ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 114
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 115 MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 174
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVRYDRTLLVADPRRC
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRC 127

Query: 175 EPKKF 180
           E  +F
Sbjct: 128 ELFRF 132

[Close]

BLAST of CsaV3_7G008490.1 vs. TAIR 10
Match: AT5G18380.3 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 197.2 bits (500), Expect = 1.2e-50
Identity = 93/108 (86.11%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 55  ESVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFSGVD 114
           ESVQCFGRKKTAVAVT+CKRG GLIK+NGCPIEL +PEILRFK +EP+LLLG+HRF+GV+
Sbjct: 8   ESVQCFGRKKTAVAVTHCKRGSGLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVN 67

Query: 115 MRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRY 163
           MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDEQSKKEIKDILVR+
Sbjct: 68  MRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRF 115

The following BLAST results are available for this feature:

BLAST of CsaV3_7G008490.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645860.1	9.8e-103	100.00	hypothetical protein Csa_017052 [Cucumis sativus]	[more]
XP_004136973.1	6.6e-75	100.00	40S ribosomal protein S16 [Cucumis sativus] >XP_004140706.1 40S ribosomal protei...	[more]
XP_022149351.1	8.6e-75	99.31	40S ribosomal protein S16-like [Momordica charantia]	[more]
XP_022989000.1	1.5e-74	99.31	40S ribosomal protein S16-like [Cucurbita maxima]	[more]
XP_040987369.1	1.9e-74	98.61	40S ribosomal protein S16 [Juglans microcarpa x Juglans regia]	[more]

BLAST of CsaV3_7G008490.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46293	5.4e-72	96.43	40S ribosomal protein S16 OS=Gossypium hirsutum OX=3635 GN=RPS16 PE=2 SV=1	[more]
O22647	1.3e-68	88.28	40S ribosomal protein S16 OS=Fritillaria agrestis OX=64177 GN=RPS16 PE=2 SV=1	[more]
Q9SK22	1.6e-68	89.21	40S ribosomal protein S16-1 OS=Arabidopsis thaliana OX=3702 GN=RPS16A PE=2 SV=1	[more]
Q42340	2.1e-68	88.49	40S ribosomal protein S16-3 OS=Arabidopsis thaliana OX=3702 GN=RPS16C PE=2 SV=1	[more]
Q9XEK7	9.9e-66	85.92	40S ribosomal protein S16 OS=Syntrichia ruralis OX=38588 GN=RPS16 PE=2 SV=1	[more]

BLAST of CsaV3_7G008490.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5B7BKA1	3.8e-76	81.91	Putative Ribosomal protein S5 domain 2-like superfamily protein (Fragment) OS=Da...	[more]
A0A5B7BR90	8.4e-76	81.38	Putative Ribosomal protein S5 domain 2-like superfamily protein (Fragment) OS=Da...	[more]
A0A6J1J781	3.2e-75	100.00	40S ribosomal protein S16-like OS=Cucurbita maxima OX=3661 GN=LOC111481879 PE=3 ...	[more]
A0A0A0L6F6	3.2e-75	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G202730 PE=3 SV=1	[more]
A0A1S3C210	3.2e-75	100.00	40S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103496134 PE=3 SV=1	[more]

BLAST of CsaV3_7G008490.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G09990.1	1.2e-69	89.21	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.1	1.5e-69	88.49	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G04230.1	1.3e-65	84.89	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.2	1.4e-59	86.40	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT5G18380.3	1.2e-50	86.11	Ribosomal protein S5 domain 2-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 61..193 e-value: 7.1E-31 score: 107.2
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 42..193
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 46..193 e-value: 3.6E-54 score: 184.9
None	No IPR available	PANTHER	PTHR21569:SF28	SUBFAMILY NOT NAMED	coord: 42..193
IPR020574	Ribosomal protein S9, conserved site	PROSITE	PS00360	RIBOSOMAL_S9	coord: 121..139
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 56..193

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G008490	CsaV3_7G008490	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G008490.1.exon1	CsaV3_7G008490.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G008490.1.cds1	CsaV3_7G008490.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G008490.1	CsaV3_7G008490.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome