CsaV3_7G003930.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G003930.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Actin cytoskeleton-regulatory complex protein
Location	chr7: 2903773 .. 2905105 (+)
Sequence length	366
RNA-Seq Expression	CsaV3_7G003930.1
Synteny	CsaV3_7G003930.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAAATTTGCCTTCTTTTCTGCCTCATTGTGGGCGAGATCTTCCTAATTCAAGCAATCACGACTTCGATTGCTACAACAACAGAGCTCCCTCTGTCGGTGGCGCCAGAGTCATCGGAGAAGGGGACCAGAGAAGGGTCTGAAGTGGCGGAGGCGCCGGAGATCCGGCGGTTGGGAAAGCACCATGGCGATAAGTCGATGGCCGGTGGGGGAGTCATTATCGGTGGCCTTGTAACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGGTTACTAGAAAAAGAGATGGGGTTGATTCGGTTCATTGAGACTGATCCTAATTTCTACTCTTTTTTTTTTTCTTTTTTCTTTTTTCTTACACAAACCTTTATATATATATATATACATAAACATATTCTTTTGTTTTTTTGGAGGAAATTTTAGAGATTGTGGTTGAGTGATGAGTTCATAGAGAGAAAAAGATCCCAATTTCCAAATAAAGAGTATACCTTCTTTTGGACAGAATATTGAAGTGAAATTCTAAACTATTTGGAGGTCTTGTGAGAATATTCTAATTTGTTTACATAAAAGCCGTAAAGGTCAAGTTCCAATTAGTTGTGAAACCTAAAAACGCGGAAGATTTTAAATCTTGGAAGTCCAAAGGGCGAAAGCTTCGTTCTTTTTGGAAAAAGTTTTTCTTAGACAAAATTTTTATATTTAATATGCGAGATTGAAAGCATACGTTTAATAGCTATGTTCAATCCCACTTTAAAAAAAAAAAGAATATTTACTTTTAATACAAAACACGTGTCAATTACTATTATAGTTAGCTTTATAAACATTATAAATATATGTGTTAAATAGATGTCTATTATCAAGTGTGAAAATATGACCATTTTATTTGTTATTCATCTCTTCCAACGTAACATTTAATTAATGTTCACGTAACCCACCACTTATTTATCATTTTATGTATAAAGAGAGGTCTTCAATGGATCTTTTATAAGTACATGCAACATCGGTTGAAATTTCAAAGGTTTTTGTTTTTTTATACAAAATTTATTTAATAATTTTGTTATTTATTAGGTATTATATTATATTTATGGAATTTAATAAGGTTTAAGGCCCAATTCTTATTGGGTCTTATCCACTAAAGAAGTAATTGGGCTTAGGGCCTCTCTCGATATCAAAGCTTCCCACCAAAAAGCAGGTGAAAGAAATACCATTCTCCTTCTTCTGCTTCTGATTTGTGTGCAGAATTTCAATTTTGAATTCAATCGATCAAAATGGCCAAGTGTTCGTTCGAATGGTGGCATGCACCCATCGTCTTCTCCATCTCTGTTGTTTTAG

mRNA sequence

ATGGCCAAAATTTGCCTTCTTTTCTGCCTCATTGTGGGCGAGATCTTCCTAATTCAAGCAATCACGACTTCGATTGCTACAACAACAGAGCTCCCTCTGTCGGTGGCGCCAGAGTCATCGGAGAAGGGGACCAGAGAAGGGTCTGAAGTGGCGGAGGCGCCGGAGATCCGGCGGTTGGGAAAGCACCATGGCGATAAGTCGATGGCCGGTGGGGGAGTCATTATCGGTGGCCTTGTAACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGAATTTCAATTTTGAATTCAATCGATCAAAATGGCCAAGTGTTCGTTCGAATGGTGGCATGCACCCATCGTCTTCTCCATCTCTGTTGTTTTAG

Coding sequence (CDS)

ATGGCCAAAATTTGCCTTCTTTTCTGCCTCATTGTGGGCGAGATCTTCCTAATTCAAGCAATCACGACTTCGATTGCTACAACAACAGAGCTCCCTCTGTCGGTGGCGCCAGAGTCATCGGAGAAGGGGACCAGAGAAGGGTCTGAAGTGGCGGAGGCGCCGGAGATCCGGCGGTTGGGAAAGCACCATGGCGATAAGTCGATGGCCGGTGGGGGAGTCATTATCGGTGGCCTTGTAACGGCAGTTTTTGCAGCTGTTTTTTGTTACATTCGGAATTTCAATTTTGAATTCAATCGATCAAAATGGCCAAGTGTTCGTTCGAATGGTGGCATGCACCCATCGTCTTCTCCATCTCTGTTGTTTTAG

Protein sequence

MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRNFNFEFNRSKWPSVRSNGGMHPSSSPSLLF*

Homology

[Close]

BLAST of CsaV3_7G003930.1 vs. NCBI nr
Match: KAE8645753.1 (hypothetical protein Csa_020263 [Cucumis sativus])

HSP 1 Score: 235.7 bits (600), Expect = 2.1e-58
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60
           MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG
Sbjct: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRNFNFEFNRSKWPSVRSNGGMHPSSSPSLL 120
           KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRNFNFEFNRSKWPSVRSNGGMHPSSSPSLL
Sbjct: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRNFNFEFNRSKWPSVRSNGGMHPSSSPSLL 120

Query: 121 F 122
           F
Sbjct: 121 F 121

[Close]

BLAST of CsaV3_7G003930.1 vs. NCBI nr
Match: KAA0031619.1 (hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK07071.1 hypothetical protein E5676_scaffold13G003890 [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 4.4e-32
Identity = 79/91 (86.81%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1  MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60
          MAK CLLFCLIV EI LIQA+ TSIATTT+LPLS APE +EKGTREGS+VAEAPEIRRLG
Sbjct: 1  MAKTCLLFCLIVAEILLIQAM-TSIATTTDLPLSAAPEPAEKGTREGSDVAEAPEIRRLG 60

Query: 61 KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIR 92
          KHHGDKS+AGGGVIIGGLVTA+FAAVFCYIR
Sbjct: 61 KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIR 90

[Close]

BLAST of CsaV3_7G003930.1 vs. NCBI nr
Match: KAG6572323.1 (hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.0 bits (271), Expect = 2.9e-20
Identity = 66/91 (72.53%), Postives = 72/91 (79.12%), Query Frame = 0


Query: 1  MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60
          MAKI LL CLI+ +I LIQA+  S ATTT   +S APE SE    EG  +AEAPEIRRLG
Sbjct: 1  MAKISLL-CLILAQILLIQAM-ASTATTTTSHVSAAPEPSETDNVEGPGLAEAPEIRRLG 60

Query: 61 KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIR 92
          KHH DKS+AGGGVIIGGLVTAVFAAVFCYIR
Sbjct: 61 KHHVDKSVAGGGVIIGGLVTAVFAAVFCYIR 89

[Close]

BLAST of CsaV3_7G003930.1 vs. NCBI nr
Match: KAG7011935.1 (hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.1 bits (261), Expect = 4.2e-19
Identity = 65/91 (71.43%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1  MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60
          MAKI LL  LI+ +I LIQA+  S ATTT   +S APE SE    EG  +AEAPEIRRLG
Sbjct: 1  MAKISLL-SLILAQILLIQAM-ASTATTTTSHVSAAPEPSETDNVEGPGLAEAPEIRRLG 60

Query: 61 KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIR 92
          KHH DKS+AGGGVIIGGLVTAVFAAVFCYIR
Sbjct: 61 KHHVDKSVAGGGVIIGGLVTAVFAAVFCYIR 89

[Close]

BLAST of CsaV3_7G003930.1 vs. NCBI nr
Match: XP_023886160.1 (uncharacterized protein LOC111998295 [Quercus suber])

HSP 1 Score: 90.9 bits (224), Expect = 8.3e-15
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 25  IATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFA 84
           +A   + P+S   ES E G +E S VAEAPEIRRLGKHH DKS+AGGGVIIGGLVTA+FA
Sbjct: 48  VARLADQPVSSVAESPE-GNKEYSNVAEAPEIRRLGKHHSDKSVAGGGVIIGGLVTAIFA 107

Query: 85  AVFCYIR 92
           AVFCYIR
Sbjct: 108 AVFCYIR 113

[Close]

BLAST of CsaV3_7G003930.1 vs. ExPASy TrEMBL
Match: A0A0A0K3N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.3e-39
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60
          MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG
Sbjct: 1  MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61 KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIR 92
          KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIR
Sbjct: 61 KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIR 91

[Close]

BLAST of CsaV3_7G003930.1 vs. ExPASy TrEMBL
Match: A0A5D3C590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003890 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 2.1e-32
Identity = 79/91 (86.81%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1  MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60
          MAK CLLFCLIV EI LIQA+ TSIATTT+LPLS APE +EKGTREGS+VAEAPEIRRLG
Sbjct: 1  MAKTCLLFCLIVAEILLIQAM-TSIATTTDLPLSAAPEPAEKGTREGSDVAEAPEIRRLG 60

Query: 61 KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIR 92
          KHHGDKS+AGGGVIIGGLVTA+FAAVFCYIR
Sbjct: 61 KHHGDKSVAGGGVIIGGLVTAIFAAVFCYIR 90

[Close]

BLAST of CsaV3_7G003930.1 vs. ExPASy TrEMBL
Match: A0A7N2R9A0 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.6e-14
Identity = 47/67 (70.15%), Postives = 53/67 (79.10%), Query Frame = 0


Query: 25  IATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFA 84
           +A   + P+S    S E G +E S VAEAPEIRRLGKHH DKS+AGGGVIIGGLVTA+FA
Sbjct: 48  VARLADQPVSSVAGSPE-GNKEYSNVAEAPEIRRLGKHHSDKSVAGGGVIIGGLVTAIFA 107

Query: 85  AVFCYIR 92
           AVFCYIR
Sbjct: 108 AVFCYIR 113

[Close]

BLAST of CsaV3_7G003930.1 vs. ExPASy TrEMBL
Match: A0A2N9IXN3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 9.8e-14
Identity = 52/107 (48.60%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 7   LFCLIVGEIFLIQAITTS----------------------IATTTELPLSVAPESSEKGT 66
           LFCLI+ EI ++QA+                         +A   + P+S   ES E  +
Sbjct: 6   LFCLILAEILVVQAMAEKSEGSELNPFGLKAQNKNGALGVVARVADQPVSSIAESPE--S 65

Query: 67  REGSEVAEAPEIRRLGKHHGDKSMAGGGVIIGGLVTAVFAAVFCYIR 92
           +E S+VAEAP IRR+GKHH DKS+AGGGVIIGGL TA+FA VFCYIR
Sbjct: 66  KEYSDVAEAPVIRRMGKHHSDKSLAGGGVIIGGLATAIFAVVFCYIR 110

[Close]

BLAST of CsaV3_7G003930.1 vs. ExPASy TrEMBL
Match: I1KF92 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_06G301200 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.3e-13
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 36  APESSEKGTREGSEVAEAPEIRRLGKHH-GDKSMAGGGVIIGGLVTAVFAAVFCYIR 92
           +P SSE+ + E +E AEAP+IRR+GKHH  D+S+AGGGVIIGGLVTA+FAAVFCYIR
Sbjct: 68  SPSSSEEKSGESNEAAEAPQIRRMGKHHSSDRSVAGGGVIIGGLVTAIFAAVFCYIR 124

[Close]

BLAST of CsaV3_7G003930.1 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 7.5e-06
Identity = 34/85 (40.00%), Postives = 47/85 (55.29%), Query Frame = 0


Query: 16 FLIQAITTSIATTTELPLSVAPESSEKGTRE-GSEVAEAPEIRRL------GKHHG--DK 75
          FL+  + +  A ++E   +  P + + G  E   E AEAPE+  L      G HH   ++
Sbjct: 10 FLLTYVFSMAAASSE---AEPPATRKLGRHEWPGEEAEAPEVSHLEETVRRGHHHSTVER 69

Query: 76 SMAGGGVIIGGLVTAVFAAVFCYIR 92
          S+AGGGVI+GGL T     VFCYIR
Sbjct: 70 SVAGGGVILGGLATTFLVVVFCYIR 91

The following BLAST results are available for this feature:

BLAST of CsaV3_7G003930.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645753.1	2.1e-58	100.00	hypothetical protein Csa_020263 [Cucumis sativus]	[more]
KAA0031619.1	4.4e-32	86.81	hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK070...	[more]
KAG6572323.1	2.9e-20	72.53	hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011935.1	4.2e-19	71.43	hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023886160.1	8.3e-15	71.64	uncharacterized protein LOC111998295 [Quercus suber]	[more]

BLAST of CsaV3_7G003930.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G003930.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3N0	2.3e-39	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1	[more]
A0A5D3C590	2.1e-32	86.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A7N2R9A0	2.6e-14	70.15	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A2N9IXN3	9.8e-14	48.60	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1	[more]
I1KF92	8.3e-13	71.93	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_06G301200 PE=4 SV=1	[more]

BLAST of CsaV3_7G003930.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09280.1	7.5e-06	40.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..56
None	No IPR available	PANTHER	PTHR34558	EXPRESSED PROTEIN	coord: 1..91
None	No IPR available	PANTHER	PTHR34558:SF4	EXPRESSED PROTEIN	coord: 1..91

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_7G003930	CsaV3_7G003930	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G003930.1.exon1	CsaV3_7G003930.1.exon1	exon
CsaV3_7G003930.1.exon2	CsaV3_7G003930.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G003930.1.cds1	CsaV3_7G003930.1.cds1	CDS
CsaV3_7G003930.1.cds2	CsaV3_7G003930.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_7G003930.1	CsaV3_7G003930.1-protein	polypeptide