CsaV3_6G038480.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G038480.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Protein GL2-INTERACTING REPRESSOR 1
Location	chr6: 21920844 .. 21921726 (+)
Sequence length	333
RNA-Seq Expression	CsaV3_6G038480.1
Synteny	CsaV3_6G038480.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAGCATAAGTGACATAACTTTGAATGAAATAAATTTGCAAGGGCCCCTCTTCCTTCTTTGATTATTATTAATTAGTTTGTGTTATGCAGTTAGGTTTTGAAAAATTCACCATAAATTCCCTTCCCTTTTTAATTCCCTTTTCCCTCTCCCCTCATTTCTTCATTCCTTTTTTTTCTTTTTCAAATCACAAACCCTGTGCTGTGTAAGCCTCTCTCATCTCTCACATGCATTCCTACAAGTGTCAATAAGTTTTCATTATTTGTTAACTTTTGTTTTTGGTTTTTAGAAAATGAGCAAGAGATCGAGAAGTAGCGAGGCAGAGGTGGAGTTGAGAGTGAACTTGAACCGGTCACCTACGGCTTCGTCTTCGTCTTCGTCGGTGAGCACGTTTGATGGATCAGGATCGGGGTCGTCAGAGATATCAGTGGGGAATTCGTGCTTGTCATGTGAAGGAGAAGAGCATGGTGGGAGATTGGAAGAGATTATAACAAGATCAATGATGTTGGTGGGATGTCCAGGGTGTTTCATGTATGTGATGCTGACAGAAAAGAGCTCTCAATGCCCAAAATGCAAGAACAACGTGTTTCTTGATTTCTTCAAGCAACAACCACATCATGCCTAGTTACCCCAACATATCCAAATTATTATTAGTTACTATAATTAAGTACTCTTTTTCTTCTCTCTTTCTTTCTTTCTTATTTCTCATCAAATTTCTTAACTTTAATTAGTCAAGTTGTTTTTCTTTTCTTTTCTTTTTGGCATTTTGGTTGGTGTGAGATCTTATTATATATAAATTAAAATGTCGTCGACCATGAAACCTAGGATGGATTATTAACTTTTTGTATGATGAATTGGCTGAAATTTTCACTTTAATTTCTCTA

mRNA sequence

ATGAGCAAGAGATCGAGAAGTAGCGAGGCAGAGGTGGAGTTGAGAGTGAACTTGAACCGGTCACCTACGGCTTCGTCTTCGTCTTCGTCGGTGAGCACGTTTGATGGATCAGGATCGGGGTCGTCAGAGATATCAGTGGGGAATTCGTGCTTGTCATGTGAAGGAGAAGAGCATGGTGGGAGATTGGAAGAGATTATAACAAGATCAATGATGTTGGTGGGATGTCCAGGGTGTTTCATGTATGTGATGCTGACAGAAAAGAGCTCTCAATGCCCAAAATGCAAGAACAACGTGTTTCTTGATTTCTTCAAGCAACAACCACATCATGCCTAG

Coding sequence (CDS)

ATGAGCAAGAGATCGAGAAGTAGCGAGGCAGAGGTGGAGTTGAGAGTGAACTTGAACCGGTCACCTACGGCTTCGTCTTCGTCTTCGTCGGTGAGCACGTTTGATGGATCAGGATCGGGGTCGTCAGAGATATCAGTGGGGAATTCGTGCTTGTCATGTGAAGGAGAAGAGCATGGTGGGAGATTGGAAGAGATTATAACAAGATCAATGATGTTGGTGGGATGTCCAGGGTGTTTCATGTATGTGATGCTGACAGAAAAGAGCTCTCAATGCCCAAAATGCAAGAACAACGTGTTTCTTGATTTCTTCAAGCAACAACCACATCATGCCTAG

Protein sequence

MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA*

Homology

[Close]

BLAST of CsaV3_6G038480.1 vs. NCBI nr
Match: KGN48041.1 (hypothetical protein Csa_002820 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 3.4e-52
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60
           MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG
Sbjct: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60

Query: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA 111
           RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA
Sbjct: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA 110

[Close]

BLAST of CsaV3_6G038480.1 vs. NCBI nr
Match: KAA0061725.1 (hypothetical protein E6C27_scaffold212G001000 [Cucumis melo var. makuwa] >TYJ96061.1 hypothetical protein E5676_scaffold182G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 182.6 bits (462), Expect = 1.9e-42
Identity = 98/110 (89.09%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGE-EHG 60
           MSKRSRSSEAEVELRVNLN+SPT SSSSSSVSTF GSGSGS     G+SCLSCEGE +HG
Sbjct: 1   MSKRSRSSEAEVELRVNLNQSPTTSSSSSSVSTFGGSGSGS-----GDSCLSCEGEDQHG 60

Query: 61  GRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHH 110
           GRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQP H
Sbjct: 61  GRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPQH 105

[Close]

BLAST of CsaV3_6G038480.1 vs. NCBI nr
Match: KAG7010337.1 (hypothetical protein SDJN02_27130, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.3 bits (342), Expect = 1.6e-28
Identity = 84/116 (72.41%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60
           MSKRSRSSE +VELRVNLNR P+ ++SS S     GSGS SS+ISV NSCL  E    GG
Sbjct: 1   MSKRSRSSEPKVELRVNLNRLPSPATSSLS-----GSGS-SSDISVENSCLGWE----GG 60

Query: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK------QQPHHA 111
             EEIITRSMMLVGCPGCFMYVMLTEKSSQCPKC NNVFLDFFK      QQ HHA
Sbjct: 61  VEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQQQQHHA 106

[Close]

BLAST of CsaV3_6G038480.1 vs. NCBI nr
Match: KAG6570472.1 (NAC domain-containing protein 40, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 135.2 bits (339), Expect = 3.5e-28
Identity = 83/113 (73.45%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60
           MSKRSRSSE +VELRVNLNR P+ ++SS S     GSGS SS+ISV NSCL  E    GG
Sbjct: 486 MSKRSRSSEPKVELRVNLNRLPSPATSSLS-----GSGS-SSDISVENSCLGWE----GG 545

Query: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK----QQPHH 110
             EEIITRSMMLVGCPGCFMYVMLTEKSSQCPKC NNVFLDFFK    QQ HH
Sbjct: 546 VEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQQHH 588

[Close]

BLAST of CsaV3_6G038480.1 vs. NCBI nr
Match: KAG7035922.1 (hypothetical protein SDJN02_02722, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.0 bits (336), Expect = 7.7e-28
Identity = 78/112 (69.64%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSG-SSEISVGNSCLSC-EGEEH 60
           MSKR RSSE EV LRV++NRSPT    +SS+S F GS SG  S++SV +SCLS  +GE  
Sbjct: 1   MSKRPRSSETEVALRVDMNRSPT----TSSMSMFGGSESGLGSDVSVESSCLSLWDGEVE 60

Query: 61  GGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA 111
               E I+TRSMMLVGCPGCFMYVMLT+KSSQCPKCKNNVFLDFF QQ HHA
Sbjct: 61  ED--EMIVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQQKHHA 106

[Close]

BLAST of CsaV3_6G038480.1 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.9e-09
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60
           MS+R+++   ++ELR+NL+  P+ +S  S V + + S + S      +SC+S E  +   
Sbjct: 1   MSRRNKNG-PKLELRLNLSPPPSQASQMSLVRSPNRSNTTSP-----SSCVSSETNQEE- 60

Query: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQ 106
              E IT SM+LVGCP C MYVML++   +CPKCK+ V LDF ++
Sbjct: 61  --NETIT-SMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQE 95

[Close]

BLAST of CsaV3_6G038480.1 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.1e-08
Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 8   SEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGGRLEEII- 67
           S    +L + LN SP  SS    V +   S + +S  S  +SC+S E  +    +     
Sbjct: 2   SRRSPKLELKLNLSPPTSSQRRMVRSPSRSAT-TSPTSPPSSCVSSEMNQDEPSVRYSTS 61

Query: 68  --TRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA 111
             T SM+LVGCP C MYVML+E   +CPKCK+ V LDF  +   +A
Sbjct: 62  PETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNA 106

[Close]

BLAST of CsaV3_6G038480.1 vs. ExPASy Swiss-Prot
Match: Q9FMS4 (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.9e-05
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 41  SSEISVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLT-EKSSQCPKCKNNVF 100
           SS ++  +S   C  E  GG  E    +SM++VGCP C MY++ + E   +CP+C ++V 
Sbjct: 23  SSLLTESSSSSLCSEEAEGGGGE---AKSMVVVGCPNCIMYIITSLENDPRCPRCNSHVL 82

Query: 101 LDF 103
           LDF
Sbjct: 83  LDF 82

[Close]

BLAST of CsaV3_6G038480.1 vs. ExPASy TrEMBL
Match: A0A0A0KJX5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425780 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.7e-52
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0


Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60
           MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG
Sbjct: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60

Query: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA 111
           RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA
Sbjct: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA 110

[Close]

BLAST of CsaV3_6G038480.1 vs. ExPASy TrEMBL
Match: A0A5D3BBS4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00200 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 9.2e-43
Identity = 98/110 (89.09%), Postives = 101/110 (91.82%), Query Frame = 0


Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGE-EHG 60
           MSKRSRSSEAEVELRVNLN+SPT SSSSSSVSTF GSGSGS     G+SCLSCEGE +HG
Sbjct: 1   MSKRSRSSEAEVELRVNLNQSPTTSSSSSSVSTFGGSGSGS-----GDSCLSCEGEDQHG 60

Query: 61  GRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHH 110
           GRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQP H
Sbjct: 61  GRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPQH 105

[Close]

BLAST of CsaV3_6G038480.1 vs. ExPASy TrEMBL
Match: A0A1S3VZ34 (uncharacterized protein LOC106779913 OS=Vigna radiata var. radiata OX=3916 GN=LOC106779913 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.9e-12
Identity = 52/112 (46.43%), Postives = 68/112 (60.71%), Query Frame = 0


Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISV---GNSCLSCEGEE 60
           MSKR+RS   EV L ++    P A+SS SS      S S SS++SV    +SC+SCE EE
Sbjct: 1   MSKRARSPRLEVSLNLS---PPRAASSVSSSDLSSDSSSSSSQVSVQSLESSCVSCEAEE 60

Query: 61  HGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHH 110
                    TR+M+LVGCP C MYVML+E   +CPKCK+ V LDF   + ++
Sbjct: 61  ---------TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENN 100

[Close]

BLAST of CsaV3_6G038480.1 vs. ExPASy TrEMBL
Match: A0A4P1R0I2 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_17077 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.9e-12
Identity = 50/115 (43.48%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISV------GNSCLSCE 60
           MSKR+RS   E+ L ++  R+PT+SS S+ +S  D S   S  ++V      G+SC+S E
Sbjct: 1   MSKRARSPRLELRLNLSPPRTPTSSSISADISLLDFSILSSPTLTVSSHSSEGSSCVSSE 60

Query: 61  GEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHH 110
            EE         TR+M+LVGCP C MYVML+E   +CPKCK+ V LDF   + ++
Sbjct: 61  AEE---------TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENN 106

[Close]

BLAST of CsaV3_6G038480.1 vs. ExPASy TrEMBL
Match: A0A4D6LH76 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG3g2549 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 6.4e-12
Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 0


Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISV---GNSCLSCEGEE 60
           MSKR+RS   EV L ++  R+ T+  SSS +S+   S S SS++SV    +SC+SCE EE
Sbjct: 1   MSKRARSPRLEVTLNLSPPRAATSVVSSSDLSS--DSSSTSSQVSVQSLESSCVSCEAEE 60

Query: 61  HGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHH 110
                    TR+M+LVGCP C MYVML+E   +CPKCK+ V LDF   + ++
Sbjct: 61  ---------TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENN 101

[Close]

BLAST of CsaV3_6G038480.1 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 3.5e-10
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 1   MSKRSRSSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGG 60
           MS+R+++   ++ELR+NL+  P+ +S  S V + + S + S      +SC+S E  +   
Sbjct: 1   MSRRNKNG-PKLELRLNLSPPPSQASQMSLVRSPNRSNTTSP-----SSCVSSETNQEE- 60

Query: 61  RLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQ 106
              E IT SM+LVGCP C MYVML++   +CPKCK+ V LDF ++
Sbjct: 61  --NETIT-SMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQE 95

[Close]

BLAST of CsaV3_6G038480.1 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 58.9 bits (141), Expect = 2.9e-09
Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 8   SEAEVELRVNLNRSPTASSSSSSVSTFDGSGSGSSEISVGNSCLSCEGEEHGGRLEEII- 67
           S    +L + LN SP  SS    V +   S + +S  S  +SC+S E  +    +     
Sbjct: 2   SRRSPKLELKLNLSPPTSSQRRMVRSPSRSAT-TSPTSPPSSCVSSEMNQDEPSVRYSTS 61

Query: 68  --TRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHHA 111
             T SM+LVGCP C MYVML+E   +CPKCK+ V LDF  +   +A
Sbjct: 62  PETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNA 106

[Close]

BLAST of CsaV3_6G038480.1 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-06
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 41  SSEISVGNSCLSCEGEEHGGRLEEIITRSMMLVGCPGCFMYVMLT-EKSSQCPKCKNNVF 100
           SS ++  +S   C  E  GG  E    +SM++VGCP C MY++ + E   +CP+C ++V 
Sbjct: 23  SSLLTESSSSSLCSEEAEGGGGE---AKSMVVVGCPNCIMYIITSLENDPRCPRCNSHVL 82

Query: 101 LDF 103
           LDF
Sbjct: 83  LDF 82

The following BLAST results are available for this feature:

BLAST of CsaV3_6G038480.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48041.1	3.4e-52	100.00	hypothetical protein Csa_002820 [Cucumis sativus]	[more]
KAA0061725.1	1.9e-42	89.09	hypothetical protein E6C27_scaffold212G001000 [Cucumis melo var. makuwa] >TYJ960...	[more]
KAG7010337.1	1.6e-28	72.41	hypothetical protein SDJN02_27130, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6570472.1	3.5e-28	73.45	NAC domain-containing protein 40, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7035922.1	7.7e-28	69.64	hypothetical protein SDJN02_02722, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CsaV3_6G038480.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRN4	4.9e-09	40.95	Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1...	[more]
Q9FNI1	4.1e-08	38.68	Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1...	[more]
Q9FMS4	1.9e-05	39.68	Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of CsaV3_6G038480.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJX5	1.7e-52	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425780 PE=4 SV=1	[more]
A0A5D3BBS4	9.2e-43	89.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3VZ34	4.9e-12	46.43	uncharacterized protein LOC106779913 OS=Vigna radiata var. radiata OX=3916 GN=LO...	[more]
A0A4P1R0I2	4.9e-12	43.48	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_17077 PE=4 S...	[more]
A0A4D6LH76	6.4e-12	46.43	Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG3g2549 PE=4 SV=1	[more]

BLAST of CsaV3_6G038480.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11600.1	3.5e-10	40.95	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT5G06270.1	2.9e-09	38.68	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G22270.1	1.4e-06	39.68	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	PANTHER	PTHR33177	PUTATIVE-RELATED	coord: 1..110
None	No IPR available	PANTHER	PTHR33177:SF46	SUBFAMILY NOT NAMED	coord: 1..110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_6G038480	CsaV3_6G038480	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G038480.1.exon1	CsaV3_6G038480.1.exon1	exon
CsaV3_6G038480.1.exon2	CsaV3_6G038480.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G038480.1.cds2	CsaV3_6G038480.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G038480.1	CsaV3_6G038480.1-protein	polypeptide