CsaV3_6G024170.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G024170.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	NADH dehydrogenase subunit 7
Location	chr6: 15997774 .. 15998115 (+)
Sequence length	342
RNA-Seq Expression	CsaV3_6G024170.1
Synteny	CsaV3_6G024170.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCAAGAACACGCTCATTCTTCAGCTGTAGAGAGACTTTTGAATTGCGAGGTACCATTACGAGCTCAATATATACGAGTCTTATTCCGTGAAATCACTCGAATTCAAATTCATTCACTTGCTTTAACTACTCATGCTATGATGTGGGAGCATCAACTCCGTTCCTGTGGGCTTTTGAGGAGCGGGAGAAATTATTTGAATTCTATGAAAGAGTCTCGGGAGCCAGGATGCATGCCAGTTTCATACGACCAGGTGGAGTGGCACAAGATCTGCCTCTTGGCTTATGTCGAGATATTGATTCCTTCACACAACAATTTGCTTCTCGTATCGACGAATTAG

mRNA sequence

ATGGCCCAAGAACACGCTCATTCTTCAGCTGTAGAGAGACTTTTGAATTGCGAGGTACCATTACGAGCTCAATATATACGAGTCTTATTCCGTGAAATCACTCGAATTCAAATTCATTCACTTGCTTTAACTACTCATGCTATGATGTGGGAGCATCAACTCCGTTCCTGTGGGCTTTTGAGGAGCGGGAGAAATTATTTGAATTCTATGAAAGAGTCTCGGGAGCCAGGATGCATGCCAGTTTCATACGACCAGGTGGAGTGGCACAAGATCTGCCTCTTGGCTTATGTCGAGATATTGATTCCTTCACACAACAATTTGCTTCTCGTATCGACGAATTAG

Coding sequence (CDS)

ATGGCCCAAGAACACGCTCATTCTTCAGCTGTAGAGAGACTTTTGAATTGCGAGGTACCATTACGAGCTCAATATATACGAGTCTTATTCCGTGAAATCACTCGAATTCAAATTCATTCACTTGCTTTAACTACTCATGCTATGATGTGGGAGCATCAACTCCGTTCCTGTGGGCTTTTGAGGAGCGGGAGAAATTATTTGAATTCTATGAAAGAGTCTCGGGAGCCAGGATGCATGCCAGTTTCATACGACCAGGTGGAGTGGCACAAGATCTGCCTCTTGGCTTATGTCGAGATATTGATTCCTTCACACAACAATTTGCTTCTCGTATCGACGAATTAG

Protein sequence

MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRIQIHSLALTTHAMMWEHQLRSCGLLRSGRNYLNSMKESREPGCMPVSYDQVEWHKICLLAYVEILIPSHNNLLLVSTN*

Homology

[Close]

BLAST of CsaV3_6G024170.1 vs. NCBI nr
Match: KAE8647121.1 (hypothetical protein Csa_021738 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 1.6e-57
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRIQIHSLALTTHAMMWEHQLRSCGLL 60
           MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRIQIHSLALTTHAMMWEHQLRSCGLL
Sbjct: 1   MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRIQIHSLALTTHAMMWEHQLRSCGLL 60

Query: 61  RSGRNYLNSMKESREPGCMPVSYDQVEWHKICLLAYVEILIPSHNNLLLVSTN 114
           RSGRNYLNSMKESREPGCMPVSYDQVEWHKICLLAYVEILIPSHNNLLLVSTN
Sbjct: 61  RSGRNYLNSMKESREPGCMPVSYDQVEWHKICLLAYVEILIPSHNNLLLVSTN 113

[Close]

BLAST of CsaV3_6G024170.1 vs. NCBI nr
Match: GEY18454.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 124.4 bits (311), Expect = 6.3e-25
Identity = 58/65 (89.23%), Postives = 61/65 (93.85%), Query Frame = 0


Query: 48  MMW--EHQLRSCGLLRSGRNYLNSMKESREPGCMPVSYDQVEWHKICLLAYVEILIPSHN 107
           M+W  EHQLRSCGLLR+G+NY NSMKESREPGCMPVSYDQVEWHKICLLAYVEILIP HN
Sbjct: 1   MLWMREHQLRSCGLLRNGKNYWNSMKESREPGCMPVSYDQVEWHKICLLAYVEILIPPHN 60

Query: 108 NLLLV 111
           NLLLV
Sbjct: 61  NLLLV 65

[Close]

BLAST of CsaV3_6G024170.1 vs. NCBI nr
Match: KAG2657363.1 (hypothetical protein PVAP13_1KG147754 [Panicum virgatum])

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-24
Identity = 75/122 (61.48%), Postives = 79/122 (64.75%), Query Frame = 0


Query: 1   MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRIQIHSLALTTHAM--------MWEH 60
           MAQEH HSSAVERLLNCEV LRAQYIRVLF EITRI  HSLA TTHAM        +W  
Sbjct: 1   MAQEHTHSSAVERLLNCEVLLRAQYIRVLFCEITRISNHSLASTTHAMDVGASTPFLWAF 60

Query: 61  QLRSCGLLRSGRNYLNSMKESREPGCMPVSY-DQVEWHKICLLAYVEILIPSHNNLLLVS 114
           +          R  L    E      M  S+ + VEWHKICLLAYVEILIP HNNLLLVS
Sbjct: 61  E---------EREKLLEFYERVSGARMHASFIELVEWHKICLLAYVEILIPPHNNLLLVS 113

[Close]

BLAST of CsaV3_6G024170.1 vs. NCBI nr
Match: KAF3436651.1 (hypothetical protein FNV43_RR19398 [Rhamnella rubrinervis])

HSP 1 Score: 105.5 bits (262), Expect = 3.0e-19
Identity = 49/73 (67.12%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 41  LALTTHAMMWEHQLRSCGLLRSGRNYLNSMKESREPGCMPVSYDQVEWHKICLLAYVEIL 100
           +A    A+++  Q++ C     GRNY NSMKESREPGCMPVSYDQVEWHKICLLAYVEIL
Sbjct: 5   IAQFERALVYVMQVKVCEKHCGGRNYWNSMKESREPGCMPVSYDQVEWHKICLLAYVEIL 64

Query: 101 IPSHNNLLLVSTN 114
           IP HNNL+L+  N
Sbjct: 65  IPPHNNLILILAN 77

[Close]

BLAST of CsaV3_6G024170.1 vs. NCBI nr
Match: QJC71595.1 (NADH dehydrogenase subunit 7, partial [Adenocalymma apurense])

HSP 1 Score: 90.9 bits (224), Expect = 7.7e-15
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRIQIHSLALTTHAM 49
           MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRI  HSLALTTHAM
Sbjct: 57  MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAM 104

[Close]

BLAST of CsaV3_6G024170.1 vs. ExPASy Swiss-Prot
Match: Q36450 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris OX=4096 GN=NAD7 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-17
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRIQIHSLALTTHAM 49
           MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRI  HSLALTTHAM
Sbjct: 76  MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAM 123

[Close]

BLAST of CsaV3_6G024170.1 vs. ExPASy Swiss-Prot
Match: P93306 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana OX=3702 GN=NAD7 PE=1 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 4.0e-14
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1   MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRIQIHSLALTTHAM 49
           MAQEHA+S AVE+LLNCEVPLRAQYIRVLF EITRI  H LALTTHAM
Sbjct: 76  MAQEHAYSLAVEKLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAM 123

[Close]

BLAST of CsaV3_6G024170.1 vs. ExPASy Swiss-Prot
Match: Q9TC96 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nephroselmis olivacea OX=31312 GN=NAD7 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-12
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1   MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRIQIHSLALTTHAM 49
           M QEHA+S AVE+LL+CEVP RAQYIRVLF EITRI  H LALTTHAM
Sbjct: 80  MCQEHAYSLAVEKLLHCEVPERAQYIRVLFSEITRILNHLLALTTHAM 127

[Close]

BLAST of CsaV3_6G024170.1 vs. ExPASy Swiss-Prot
Match: Q37384 (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Acanthamoeba castellanii OX=5755 GN=NAD7 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 6.3e-12
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1   MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRIQIHSLALTTHAM 49
           M+QEHA+S A+E+LLNC VP+RAQYIRV++ E+TRI  H LA+TTHAM
Sbjct: 83  MSQEHAYSLAIEKLLNCNVPIRAQYIRVIYSELTRILNHILAVTTHAM 130

[Close]

BLAST of CsaV3_6G024170.1 vs. ExPASy Swiss-Prot
Match: O21270 (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Reclinomonas americana OX=48483 GN=NAD7 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.3e-12
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1   MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRIQIHSLALTTHAM 49
           MAQEHA+S AVE+LL CEVP RAQYIRVLF EITRI  H +A+TTHA+
Sbjct: 78  MAQEHAYSLAVEKLLGCEVPKRAQYIRVLFCEITRILNHLMAVTTHAL 125

[Close]

BLAST of CsaV3_6G024170.1 vs. ExPASy TrEMBL
Match: A0A2R4IRX0 (Putative NADH dehydrogenase subunit 7 OS=Helianthus annuus OX=4232 GN=nad7 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.7e-15
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1  MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRIQIHSLALTTHAM 49
          MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRI  HSLALTTHAM
Sbjct: 2  MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAM 49

[Close]

BLAST of CsaV3_6G024170.1 vs. ExPASy TrEMBL
Match: A0A290WKY4 (NADH dehydrogenase subunit 7 OS=Solanum lycopersicum OX=4081 GN=nad7 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.7e-15
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRIQIHSLALTTHAM 49
           MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRI  HSLALTTHAM
Sbjct: 76  MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAM 123

[Close]

BLAST of CsaV3_6G024170.1 vs. ExPASy TrEMBL
Match: A0A7G8P507 (NADH dehydrogenase subunit 7 OS=Daucus crinitus OX=79167 GN=nad7 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.7e-15
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRIQIHSLALTTHAM 49
           MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRI  HSLALTTHAM
Sbjct: 76  MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAM 123

[Close]

BLAST of CsaV3_6G024170.1 vs. ExPASy TrEMBL
Match: A0A7S9H4G8 (NADH dehydrogenase subunit 7 OS=Solanum stenotomum subsp. goniocalyx OX=1050191 GN=nad7 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.7e-15
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRIQIHSLALTTHAM 49
           MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRI  HSLALTTHAM
Sbjct: 101 MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAM 148

[Close]

BLAST of CsaV3_6G024170.1 vs. ExPASy TrEMBL
Match: A0A7G8P512 (NADH dehydrogenase subunit 7 OS=Daucus involucratus OX=180804 GN=nad7 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.7e-15
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRIQIHSLALTTHAM 49
           MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRI  HSLALTTHAM
Sbjct: 76  MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAM 123

[Close]

BLAST of CsaV3_6G024170.1 vs. TAIR 10
Match: ATMG00510.1 (NADH dehydrogenase subunit 7 )

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-18
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 0


Query: 1   MAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRIQIHSLALTTHAM 49
           MAQEHAHSSAVE+LLNCEVPLRAQYIRVLFREITRI  HSLALTTHAM
Sbjct: 76  MAQEHAHSSAVEKLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAM 123

The following BLAST results are available for this feature:

BLAST of CsaV3_6G024170.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647121.1	1.6e-57	100.00	hypothetical protein Csa_021738 [Cucumis sativus]	[more]
GEY18454.1	6.3e-25	89.23	hypothetical protein [Tanacetum cinerariifolium]	[more]
KAG2657363.1	1.1e-24	61.48	hypothetical protein PVAP13_1KG147754 [Panicum virgatum]	[more]
KAF3436651.1	3.0e-19	67.12	hypothetical protein FNV43_RR19398 [Rhamnella rubrinervis]	[more]
QJC71595.1	7.7e-15	95.83	NADH dehydrogenase subunit 7, partial [Adenocalymma apurense]	[more]

BLAST of CsaV3_6G024170.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q36450	1.0e-17	95.83	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris OX...	[more]
P93306	4.0e-14	85.42	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana OX...	[more]
Q9TC96	1.7e-12	79.17	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nephroselmis olivacea O...	[more]
Q37384	6.3e-12	68.75	NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Acanthamoeba castellanii OX=575...	[more]
O21270	8.3e-12	75.00	NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Reclinomonas americana OX=48483...	[more]

BLAST of CsaV3_6G024170.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2R4IRX0	3.7e-15	95.83	Putative NADH dehydrogenase subunit 7 OS=Helianthus annuus OX=4232 GN=nad7 PE=3 ...	[more]
A0A290WKY4	3.7e-15	95.83	NADH dehydrogenase subunit 7 OS=Solanum lycopersicum OX=4081 GN=nad7 PE=3 SV=1	[more]
A0A7G8P507	3.7e-15	95.83	NADH dehydrogenase subunit 7 OS=Daucus crinitus OX=79167 GN=nad7 PE=3 SV=1	[more]
A0A7S9H4G8	3.7e-15	95.83	NADH dehydrogenase subunit 7 OS=Solanum stenotomum subsp. goniocalyx OX=1050191 ...	[more]
A0A7G8P512	3.7e-15	95.83	NADH dehydrogenase subunit 7 OS=Daucus involucratus OX=180804 GN=nad7 PE=3 SV=1	[more]

BLAST of CsaV3_6G024170.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00510.1	1.6e-18	93.75	NADH dehydrogenase subunit 7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029014	[NiFe]-hydrogenase, large subunit	GENE3D	1.10.645.10		coord: 1..75 e-value: 7.0E-14 score: 53.3
IPR029014	[NiFe]-hydrogenase, large subunit	SUPERFAMILY	56762	HydB/Nqo4-like	coord: 1..52
IPR022885	NAD(P)H-quinone oxidoreductase subunit D/H	PANTHER	PTHR11993	NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT	coord: 1..50

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_6G024170	CsaV3_6G024170	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G024170.1.exon1	CsaV3_6G024170.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G024170.1.cds1	CsaV3_6G024170.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G024170.1	CsaV3_6G024170.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H