CsaV3_6G024000.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G024000.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 15917952 .. 15918705 (-)
Sequence length	681
RNA-Seq Expression	CsaV3_6G024000.1
Synteny	CsaV3_6G024000.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACTTGAATCCTCGATCATTCATGCAATTCCTTCTTTAGGCTTTCTCTTTCCGACTACTTCTAAAAGAAGGCACCCAATAAAGAAGAAAAAGGTCTTGTCATCGAGATCGACCTCTTTCCGAGGCATTGGAAATCCAGACCGGCTCAGAGAATGGCGCAATTTAGCCCTTCGTTTCGCCAACAAAGAAGTCAGAATCTTTCCCATTCCTTCTTTGCCGAGCCGCCTCTCTTCGCCATTCGAAGTACTACCTCTGCCTCGCAATATTCTTTGCACCTCCTTTGAAATTCAATAAAGAAAAAAGAAATAGCACTGAGTCTGTGATTTTGCCGGCCGGCCCCGGGGGAGTTTACTCGACCCATTCTCCAGTCTCCCGCACAGAAAAAGTCAGTGTGCGACTCCGTATGAGGACCTCTTTCCCTTCTGCCCACTCTCCGTTCATACGGTTCTCAAAGCAGAGGAGGAAGGGTGGGCTGCAGGTACCACGAGCCCTCTGTCCCACACATCTATCCAGAAGCAAGTGTAGTTCACCGGTTCCACCGAATGCTCCTATCTCTCGGCAAAGATCGTGTGAGTGTGCAGTTATGCTTCGGATGCTTCGCCATAGAATAGATCAACCCAGTTCCCCTTCTTTTCCGGTGCACTCGCTTTATATCTCCGACACACAAGGAAGGACGCGTGGGAAGAAAGCAGCCCTAGCCTCTGTCCGACCGATCATTCCGCTGGCATCTTGCATTCACGCCTCCGTTTGA

mRNA sequence

ATGGAACTTGAATCCTCGATCATTCATGCAATTCCTTCTTTAGGCTTTCTCTTTCCGACTACTTCTAAAAGAAGGCACCCAATAAAGAAGAAAAAGCCCTTCGTTTCGCCAACAAAGAAGTCAGAATCTTTCCCATTCCTTCTTTGCCGAGCCGCCTCTCTTCGCCATTCGAAGTACTACCTCTGCCTCGCAATATTCTTTGCACCTCCTTTGAAATTCAATAAAGAAAAAAGAAATAGCACTGAGTCTGTGATTTTGCCGGCCGGCCCCGGGGGAGTTTACTCGACCCATTCTCCAGTCTCCCGCACAGAAAAAGTCAGTGTGCGACTCCGTATGAGGACCTCTTTCCCTTCTGCCCACTCTCCGTTCATACGGTTCTCAAAGCAGAGGAGGAAGGGTGGGCTGCAGGTACCACGAGCCCTCTGTCCCACACATCTATCCAGAAGCAAGTGTAGTTCACCGGTTCCACCGAATGCTCCTATCTCTCGGCAAAGATCGTGTGAGTGTGCAGTTATGCTTCGGATGCTTCGCCATAGAATAGATCAACCCAGTTCCCCTTCTTTTCCGGTGCACTCGCTTTATATCTCCGACACACAAGGAAGGACGCGTGGGAAGAAAGCAGCCCTAGCCTCTGTCCGACCGATCATTCCGCTGGCATCTTGCATTCACGCCTCCGTTTGA

Coding sequence (CDS)

ATGGAACTTGAATCCTCGATCATTCATGCAATTCCTTCTTTAGGCTTTCTCTTTCCGACTACTTCTAAAAGAAGGCACCCAATAAAGAAGAAAAAGCCCTTCGTTTCGCCAACAAAGAAGTCAGAATCTTTCCCATTCCTTCTTTGCCGAGCCGCCTCTCTTCGCCATTCGAAGTACTACCTCTGCCTCGCAATATTCTTTGCACCTCCTTTGAAATTCAATAAAGAAAAAAGAAATAGCACTGAGTCTGTGATTTTGCCGGCCGGCCCCGGGGGAGTTTACTCGACCCATTCTCCAGTCTCCCGCACAGAAAAAGTCAGTGTGCGACTCCGTATGAGGACCTCTTTCCCTTCTGCCCACTCTCCGTTCATACGGTTCTCAAAGCAGAGGAGGAAGGGTGGGCTGCAGGTACCACGAGCCCTCTGTCCCACACATCTATCCAGAAGCAAGTGTAGTTCACCGGTTCCACCGAATGCTCCTATCTCTCGGCAAAGATCGTGTGAGTGTGCAGTTATGCTTCGGATGCTTCGCCATAGAATAGATCAACCCAGTTCCCCTTCTTTTCCGGTGCACTCGCTTTATATCTCCGACACACAAGGAAGGACGCGTGGGAAGAAAGCAGCCCTAGCCTCTGTCCGACCGATCATTCCGCTGGCATCTTGCATTCACGCCTCCGTTTGA

Protein sequence

MELESSIIHAIPSLGFLFPTTSKRRHPIKKKKPFVSPTKKSESFPFLLCRAASLRHSKYYLCLAIFFAPPLKFNKEKRNSTESVILPAGPGGVYSTHSPVSRTEKVSVRLRMRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAVMLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRGKKAALASVRPIIPLASCIHASV*

Homology

[Close]

BLAST of CsaV3_6G024000.1 vs. NCBI nr
Match: KAE8647104.1 (hypothetical protein Csa_021729 [Cucumis sativus])

HSP 1 Score: 453.8 bits (1166), Expect = 9.0e-124
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MELESSIIHAIPSLGFLFPTTSKRRHPIKKKKPFVSPTKKSESFPFLLCRAASLRHSKYY 60
           MELESSIIHAIPSLGFLFPTTSKRRHPIKKKKPFVSPTKKSESFPFLLCRAASLRHSKYY
Sbjct: 1   MELESSIIHAIPSLGFLFPTTSKRRHPIKKKKPFVSPTKKSESFPFLLCRAASLRHSKYY 60

Query: 61  LCLAIFFAPPLKFNKEKRNSTESVILPAGPGGVYSTHSPVSRTEKVSVRLRMRTSFPSAH 120
           LCLAIFFAPPLKFNKEKRNSTESVILPAGPGGVYSTHSPVSRTEKVSVRLRMRTSFPSAH
Sbjct: 61  LCLAIFFAPPLKFNKEKRNSTESVILPAGPGGVYSTHSPVSRTEKVSVRLRMRTSFPSAH 120

Query: 121 SPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAVMLRMLRHRI 180
           SPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAVMLRMLRHRI
Sbjct: 121 SPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAVMLRMLRHRI 180

Query: 181 DQPSSPSFPVHSLYISDTQGRTRGKKAALASVRPIIPLASCIHASV 227
           DQPSSPSFPVHSLYISDTQGRTRGKKAALASVRPIIPLASCIHASV
Sbjct: 181 DQPSSPSFPVHSLYISDTQGRTRGKKAALASVRPIIPLASCIHASV 226

[Close]

BLAST of CsaV3_6G024000.1 vs. NCBI nr
Match: XP_007134774.1 (hypothetical protein PHAVU_010G074800g [Phaseolus vulgaris] >ESW06768.1 hypothetical protein PHAVU_010G074800g [Phaseolus vulgaris])

HSP 1 Score: 228.8 bits (582), Expect = 4.7e-56
Identity = 117/127 (92.13%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 100 VSRTEKVSVRLRMRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNA 159
           V RT +VSVRLRMRTSFPSAHSPF RFSKQRRKGG QVPRALCPTHLSRSKCSSPVPPNA
Sbjct: 8   VFRTAQVSVRLRMRTSFPSAHSPFTRFSKQRRKGGQQVPRALCPTHLSRSKCSSPVPPNA 67

Query: 160 PISRQRSCECAVMLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRGKKAALASVRPIIPLA 219
           PISRQRSCECAVMLRMLRHRID+PSS SFPVHSLYISDTQGRTR  +AALASVRPIIPLA
Sbjct: 68  PISRQRSCECAVMLRMLRHRIDRPSSRSFPVHSLYISDTQGRTRW-EAALASVRPIIPLA 127

Query: 220 SCIHASV 227
           SCIHASV
Sbjct: 128 SCIHASV 133

[Close]

BLAST of CsaV3_6G024000.1 vs. NCBI nr
Match: YP_010047116.1 (hypothetical protein J6727_mgp35 [Pyrus betulifolia] >QPJ79552.1 hypothetical protein [Pyrus betulifolia])

HSP 1 Score: 220.7 bits (561), Expect = 1.3e-53
Identity = 112/136 (82.35%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 89  GPGGVYSTHSPVSRTEKVSVRLRMRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSR 148
           GPGGV STHSPVSRT +VSVRLRMRTSFPSAHSPF RFSKQRRKGG QVPRALCPTHLSR
Sbjct: 5   GPGGVCSTHSPVSRTAQVSVRLRMRTSFPSAHSPFTRFSKQRRKGGQQVPRALCPTHLSR 64

Query: 149 SKCSSPVPPNAPISRQRSCECAVMLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRGKKAA 208
           SKCSSPVPPNAPISRQRSCECAVMLRMLRHRID+PSS SFPVHSLYISDTQGRTR + ++
Sbjct: 65  SKCSSPVPPNAPISRQRSCECAVMLRMLRHRIDRPSSRSFPVHSLYISDTQGRTRWEGSS 124

Query: 209 LASVRPIIPLASCIHA 225
             S+ P    A  +H+
Sbjct: 125 -PSLCPADHSAGILHS 139

[Close]

BLAST of CsaV3_6G024000.1 vs. NCBI nr
Match: GFS28446.1 (hypothetical protein Acr_00g0001900 [Actinidia rufa] >GFS28601.1 hypothetical protein Acr_00g0002740 [Actinidia rufa] >GFS28775.1 hypothetical protein Acr_00g0003860 [Actinidia rufa])

HSP 1 Score: 220.3 bits (560), Expect = 1.7e-53
Identity = 112/126 (88.89%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 78  RNSTESVILPAGPGGVYSTHSPVSRTEKVSVRLRMRTSFPSAHSPFIRFSKQRRKGGLQV 137
           R    SVI PA PGGVYSTHSPVSRT +VSVRLRMRTSFPSAHSPF RFSKQRRKGG QV
Sbjct: 94  RCKASSVIYPA-PGGVYSTHSPVSRTAQVSVRLRMRTSFPSAHSPFTRFSKQRRKGGHQV 153

Query: 138 PRALCPTHLSRSKCSSPVPPNAPISRQRSCECAVMLRMLRHRIDQPSSPSFPVHSLYISD 197
           PRALCPTHLSRSKCSSPVPPNAPISRQRS ECAVML+MLRHRID+PSS SFPVHSLYISD
Sbjct: 154 PRALCPTHLSRSKCSSPVPPNAPISRQRSYECAVMLQMLRHRIDRPSSRSFPVHSLYISD 213

Query: 198 TQGRTR 204
           TQGRTR
Sbjct: 214 TQGRTR 218

[Close]

BLAST of CsaV3_6G024000.1 vs. NCBI nr
Match: KAC9255307.1 (hypothetical protein E3N88_46106 [Mikania micrantha] >KAC9255313.1 hypothetical protein E3N88_46112 [Mikania micrantha] >KAD0468657.1 hypothetical protein E3N88_44231 [Mikania micrantha])

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-52
Identity = 106/116 (91.38%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 88  AGPGGVYSTHSPVSRTEKVSVRLRMRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLS 147
           +GP G+YSTHSPVSRT +VSVRLRMRTSFPSAHSPF RFSKQRRKGG QVPRALCPTHLS
Sbjct: 63  SGPRGLYSTHSPVSRTAQVSVRLRMRTSFPSAHSPFTRFSKQRRKGGQQVPRALCPTHLS 122

Query: 148 RSKCSSPVPPNAPISRQRSCECAVMLRMLRHRIDQPSSPSFPVHSLYISDTQGRTR 204
           RSKCSSPVPPNAPI RQRSCECAVMLRMLRHRID+PSS SFPVHSLYISDTQGRTR
Sbjct: 123 RSKCSSPVPPNAPICRQRSCECAVMLRMLRHRIDRPSSRSFPVHSLYISDTQGRTR 178

[Close]

BLAST of CsaV3_6G024000.1 vs. ExPASy TrEMBL
Match: V7AQ89 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_010G074800g PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 2.3e-56
Identity = 117/127 (92.13%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 100 VSRTEKVSVRLRMRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNA 159
           V RT +VSVRLRMRTSFPSAHSPF RFSKQRRKGG QVPRALCPTHLSRSKCSSPVPPNA
Sbjct: 8   VFRTAQVSVRLRMRTSFPSAHSPFTRFSKQRRKGGQQVPRALCPTHLSRSKCSSPVPPNA 67

Query: 160 PISRQRSCECAVMLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRGKKAALASVRPIIPLA 219
           PISRQRSCECAVMLRMLRHRID+PSS SFPVHSLYISDTQGRTR  +AALASVRPIIPLA
Sbjct: 68  PISRQRSCECAVMLRMLRHRIDRPSSRSFPVHSLYISDTQGRTRW-EAALASVRPIIPLA 127

Query: 220 SCIHASV 227
           SCIHASV
Sbjct: 128 SCIHASV 133

[Close]

BLAST of CsaV3_6G024000.1 vs. ExPASy TrEMBL
Match: A0A7T0CRU8 (Uncharacterized protein OS=Pyrus betulifolia OX=436086 GN=ORF211 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 6.2e-54
Identity = 112/136 (82.35%), Postives = 120/136 (88.24%), Query Frame = 0


Query: 89  GPGGVYSTHSPVSRTEKVSVRLRMRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSR 148
           GPGGV STHSPVSRT +VSVRLRMRTSFPSAHSPF RFSKQRRKGG QVPRALCPTHLSR
Sbjct: 5   GPGGVCSTHSPVSRTAQVSVRLRMRTSFPSAHSPFTRFSKQRRKGGQQVPRALCPTHLSR 64

Query: 149 SKCSSPVPPNAPISRQRSCECAVMLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRGKKAA 208
           SKCSSPVPPNAPISRQRSCECAVMLRMLRHRID+PSS SFPVHSLYISDTQGRTR + ++
Sbjct: 65  SKCSSPVPPNAPISRQRSCECAVMLRMLRHRIDRPSSRSFPVHSLYISDTQGRTRWEGSS 124

Query: 209 LASVRPIIPLASCIHA 225
             S+ P    A  +H+
Sbjct: 125 -PSLCPADHSAGILHS 139

[Close]

BLAST of CsaV3_6G024000.1 vs. ExPASy TrEMBL
Match: A0A7J0D786 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0001900 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 8.1e-54
Identity = 112/126 (88.89%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 78  RNSTESVILPAGPGGVYSTHSPVSRTEKVSVRLRMRTSFPSAHSPFIRFSKQRRKGGLQV 137
           R    SVI PA PGGVYSTHSPVSRT +VSVRLRMRTSFPSAHSPF RFSKQRRKGG QV
Sbjct: 94  RCKASSVIYPA-PGGVYSTHSPVSRTAQVSVRLRMRTSFPSAHSPFTRFSKQRRKGGHQV 153

Query: 138 PRALCPTHLSRSKCSSPVPPNAPISRQRSCECAVMLRMLRHRIDQPSSPSFPVHSLYISD 197
           PRALCPTHLSRSKCSSPVPPNAPISRQRS ECAVML+MLRHRID+PSS SFPVHSLYISD
Sbjct: 154 PRALCPTHLSRSKCSSPVPPNAPISRQRSYECAVMLQMLRHRIDRPSSRSFPVHSLYISD 213

Query: 198 TQGRTR 204
           TQGRTR
Sbjct: 214 TQGRTR 218

[Close]

BLAST of CsaV3_6G024000.1 vs. ExPASy TrEMBL
Match: A0A5N6L760 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_44231 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 5.3e-53
Identity = 106/116 (91.38%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 88  AGPGGVYSTHSPVSRTEKVSVRLRMRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLS 147
           +GP G+YSTHSPVSRT +VSVRLRMRTSFPSAHSPF RFSKQRRKGG QVPRALCPTHLS
Sbjct: 63  SGPRGLYSTHSPVSRTAQVSVRLRMRTSFPSAHSPFTRFSKQRRKGGQQVPRALCPTHLS 122

Query: 148 RSKCSSPVPPNAPISRQRSCECAVMLRMLRHRIDQPSSPSFPVHSLYISDTQGRTR 204
           RSKCSSPVPPNAPI RQRSCECAVMLRMLRHRID+PSS SFPVHSLYISDTQGRTR
Sbjct: 123 RSKCSSPVPPNAPICRQRSCECAVMLRMLRHRIDRPSSRSFPVHSLYISDTQGRTR 178

[Close]

BLAST of CsaV3_6G024000.1 vs. ExPASy TrEMBL
Match: A0A445GXA1 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_041803 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 6.9e-53
Identity = 112/139 (80.58%), Postives = 121/139 (87.05%), Query Frame = 0


Query: 88  AGPG--GVYSTHSPVSRTEKVSVRLRMRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTH 147
           +GPG  GVYSTHSPV RT +VSVRLRMRTSFPSAHSPF RFSKQRRKGG QVPRALCPTH
Sbjct: 11  SGPGGRGVYSTHSPVFRTAQVSVRLRMRTSFPSAHSPFTRFSKQRRKGGQQVPRALCPTH 70

Query: 148 LSRSKCSSPVPPNAPISRQRSCECAVMLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRGK 207
           LSRSKCSSPVPPNAPISRQRSCECAVMLRMLRHRID+PSS SFPVHSLYISDTQGRTR +
Sbjct: 71  LSRSKCSSPVPPNAPISRQRSCECAVMLRMLRHRIDRPSSRSFPVHSLYISDTQGRTRWE 130

Query: 208 KAALASVRPIIPLASCIHA 225
            ++  S+ P    A  +H+
Sbjct: 131 GSS-PSLCPADHSAGILHS 148

The following BLAST results are available for this feature:

BLAST of CsaV3_6G024000.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647104.1	9.0e-124	100.00	hypothetical protein Csa_021729 [Cucumis sativus]	[more]
XP_007134774.1	4.7e-56	92.13	hypothetical protein PHAVU_010G074800g [Phaseolus vulgaris] >ESW06768.1 hypothet...	[more]
YP_010047116.1	1.3e-53	82.35	hypothetical protein J6727_mgp35 [Pyrus betulifolia] >QPJ79552.1 hypothetical pr...	[more]
GFS28446.1	1.7e-53	88.89	hypothetical protein Acr_00g0001900 [Actinidia rufa] >GFS28601.1 hypothetical pr...	[more]
KAC9255307.1	1.1e-52	91.38	hypothetical protein E3N88_46106 [Mikania micrantha] >KAC9255313.1 hypothetical ...	[more]

BLAST of CsaV3_6G024000.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G024000.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
V7AQ89	2.3e-56	92.13	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_010G074800g PE=4 ...	[more]
A0A7T0CRU8	6.2e-54	82.35	Uncharacterized protein OS=Pyrus betulifolia OX=436086 GN=ORF211 PE=4 SV=1	[more]
A0A7J0D786	8.1e-54	88.89	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0001900 PE=4 SV=1	[more]
A0A5N6L760	5.3e-53	91.38	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_44231 PE=4 SV=1	[more]
A0A445GXA1	6.9e-53	80.58	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_041803 PE=4 SV=1	[more]

BLAST of CsaV3_6G024000.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_6G024000	CsaV3_6G024000	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G024000.1.exon2	CsaV3_6G024000.1.exon2	exon
CsaV3_6G024000.1.exon1	CsaV3_6G024000.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G024000.1.cds2	CsaV3_6G024000.1.cds2	CDS
CsaV3_6G024000.1.cds1	CsaV3_6G024000.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G024000.1	CsaV3_6G024000.1-protein	polypeptide