CsaV3_6G009130.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G009130.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Agglutinin domain-containing protein
Location	chr6: 7349369 .. 7349659 (-)
Sequence length	291
RNA-Seq Expression	CsaV3_6G009130.1
Synteny	CsaV3_6G009130.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAATATATGGAGAGAGTAAAGGCTGTGGATTTTCAAGGAGCCATGAATGGGAGCGATGAAGTGAATACAGTGAAGTTTAAGTTTTCTTATGAGGAGGAAGAAAGTCAGTGTTGGAGCTCAACAGTTGGAATGAAATTGGCTTATTCAATGACAATAGAAGCTGGAATTCCATTCATTATGAAGACAAATATTGTAATATCAGGGGATATTTCAGATTCTTACACATGGGGACAAACCAATAAGAAATCAACTCCTAAAACATCTTCATATTCACTTGAAGTATAG

mRNA sequence

ATGGGAGAATATATGGAGAGAGTAAAGGCTGTGGATTTTCAAGGAGCCATGAATGGGAGCGATGAAGTGAATACAGTGAAGTTTAAGTTTTCTTATGAGGAGGAAGAAAGTCAGTGTTGGAGCTCAACAGTTGGAATGAAATTGGCTTATTCAATGACAATAGAAGCTGGAATTCCATTCATTATGAAGACAAATATTGTAATATCAGGGGATATTTCAGATTCTTACACATGGGGACAAACCAATAAGAAATCAACTCCTAAAACATCTTCATATTCACTTGAAGTATAG

Coding sequence (CDS)

ATGGGAGAATATATGGAGAGAGTAAAGGCTGTGGATTTTCAAGGAGCCATGAATGGGAGCGATGAAGTGAATACAGTGAAGTTTAAGTTTTCTTATGAGGAGGAAGAAAGTCAGTGTTGGAGCTCAACAGTTGGAATGAAATTGGCTTATTCAATGACAATAGAAGCTGGAATTCCATTCATTATGAAGACAAATATTGTAATATCAGGGGATATTTCAGATTCTTACACATGGGGACAAACCAATAAGAAATCAACTCCTAAAACATCTTCATATTCACTTGAAGTATAG

Protein sequence

MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV*

Homology

[Close]

BLAST of CsaV3_6G009130.1 vs. NCBI nr
Match: KGN46563.1 (hypothetical protein Csa_005179 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 4.2e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPF 60
          MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPF
Sbjct: 1  MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPF 60

Query: 61 IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 97
          IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV
Sbjct: 61 IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 96

[Close]

BLAST of CsaV3_6G009130.1 vs. NCBI nr
Match: XP_008458669.1 (PREDICTED: uncharacterized protein LOC103497997 [Cucumis melo] >TYK24762.1 uncharacterized protein E5676_scaffold266G003250 [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.1e-35
Identity = 78/93 (83.87%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMK 63
           Y E + AVDFQGAMNGSDEVN + F FSYEEEESQCWSSTVGMKLAYSMTIEAGIP IM 
Sbjct: 308 YGENILAVDFQGAMNGSDEVNHMDFNFSYEEEESQCWSSTVGMKLAYSMTIEAGIPLIMD 367

Query: 64  TNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 97
           TNIV+SG+IS+SYTWGQTNKKSTPK +SYSLEV
Sbjct: 368 TNIVMSGEISESYTWGQTNKKSTPKRTSYSLEV 400

[Close]

BLAST of CsaV3_6G009130.1 vs. NCBI nr
Match: XP_023521953.1 (uncharacterized protein LOC111785802 [Cucurbita pepo subsp. pepo] >XP_023544074.1 uncharacterized protein LOC111803768 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-08
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 16  AMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMKTNIVISGDISDS 75
           A N S + NT+  K  YE  ES  WSSTV  KL    TI+ GIP I +  I +S + S  
Sbjct: 323 ASNNSSKENTIDMKLRYEISESNTWSSTVSAKLGVQTTIQTGIPLIAEGKIEMSAEFSGE 382

Query: 76  YTWGQTNKKSTPKTSSYSLEV 97
           YTWG+T  KS+   + Y++ V
Sbjct: 383 YTWGKTKSKSSEIETVYTVTV 403

[Close]

BLAST of CsaV3_6G009130.1 vs. NCBI nr
Match: XP_023543607.1 (natterin-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-08
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = 0


Query: 16 AMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMKTNIVISGDISDS 75
          A N S + NT+  K  YE  ES  WSSTV  KL    TI+ GIP I +  I +S + S  
Sbjct: 6  ASNNSSKENTIDMKLRYEISESNTWSSTVSAKLGVQTTIQTGIPLIAEGKIEMSAEFSGE 65

Query: 76 YTWGQTNKKSTPKTSSYSLEV 97
          YTWG+T  KS+   + Y++ V
Sbjct: 66 YTWGKTKSKSSEIETVYTVTV 86

[Close]

BLAST of CsaV3_6G009130.1 vs. NCBI nr
Match: XP_008458670.1 (PREDICTED: uncharacterized protein LOC103497999 [Cucumis melo] >TYK24763.1 uncharacterized protein E5676_scaffold266G003260 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 2.7e-08
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 0


Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMK 63
           Y E ++    Q A N +    T     +Y +E +  W++T+ MKL + +    GIP I  
Sbjct: 307 YGETIEVAATQDATNDTSGYLTQTLSLAYTDEVTNTWNNTIEMKLGFGLEFSGGIPLITS 366

Query: 64  TNIVISGDISDSYTWGQTNKKSTPKTSSY 93
             I +SG+IS SY+WG+T  K T K SSY
Sbjct: 367 AGITVSGEISGSYSWGETLTKKTSKESSY 395

[Close]

BLAST of CsaV3_6G009130.1 vs. ExPASy TrEMBL
Match: A0A0A0KAR2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108610 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.0e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPF 60
          MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPF
Sbjct: 1  MGEYMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPF 60

Query: 61 IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 97
          IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV
Sbjct: 61 IMKTNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 96

[Close]

BLAST of CsaV3_6G009130.1 vs. ExPASy TrEMBL
Match: A0A5D3DML5 (Agglutinin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003250 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.6e-36
Identity = 78/93 (83.87%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMK 63
           Y E + AVDFQGAMNGSDEVN + F FSYEEEESQCWSSTVGMKLAYSMTIEAGIP IM 
Sbjct: 308 YGENILAVDFQGAMNGSDEVNHMDFNFSYEEEESQCWSSTVGMKLAYSMTIEAGIPLIMD 367

Query: 64  TNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 97
           TNIV+SG+IS+SYTWGQTNKKSTPK +SYSLEV
Sbjct: 368 TNIVMSGEISESYTWGQTNKKSTPKRTSYSLEV 400

[Close]

BLAST of CsaV3_6G009130.1 vs. ExPASy TrEMBL
Match: A0A1S3C8I1 (uncharacterized protein LOC103497997 OS=Cucumis melo OX=3656 GN=LOC103497997 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.6e-36
Identity = 78/93 (83.87%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMK 63
           Y E + AVDFQGAMNGSDEVN + F FSYEEEESQCWSSTVGMKLAYSMTIEAGIP IM 
Sbjct: 308 YGENILAVDFQGAMNGSDEVNHMDFNFSYEEEESQCWSSTVGMKLAYSMTIEAGIPLIMD 367

Query: 64  TNIVISGDISDSYTWGQTNKKSTPKTSSYSLEV 97
           TNIV+SG+IS+SYTWGQTNKKSTPK +SYSLEV
Sbjct: 368 TNIVMSGEISESYTWGQTNKKSTPKRTSYSLEV 400

[Close]

BLAST of CsaV3_6G009130.1 vs. ExPASy TrEMBL
Match: A0A5D3DM96 (Agglutinin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003260 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 0


Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMK 63
           Y E ++    Q A N +    T     +Y +E +  W++T+ MKL + +    GIP I  
Sbjct: 307 YGETIEVAATQDATNDTSGYLTQTLSLAYTDEVTNTWNNTIEMKLGFGLEFSGGIPLITS 366

Query: 64  TNIVISGDISDSYTWGQTNKKSTPKTSSY 93
             I +SG+IS SY+WG+T  K T K SSY
Sbjct: 367 AGITVSGEISGSYSWGETLTKKTSKESSY 395

[Close]

BLAST of CsaV3_6G009130.1 vs. ExPASy TrEMBL
Match: A0A1S3C8E4 (uncharacterized protein LOC103497999 OS=Cucumis melo OX=3656 GN=LOC103497999 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 0


Query: 4   YMERVKAVDFQGAMNGSDEVNTVKFKFSYEEEESQCWSSTVGMKLAYSMTIEAGIPFIMK 63
           Y E ++    Q A N +    T     +Y +E +  W++T+ MKL + +    GIP I  
Sbjct: 307 YGETIEVAATQDATNDTSGYLTQTLSLAYTDEVTNTWNNTIEMKLGFGLEFSGGIPLITS 366

Query: 64  TNIVISGDISDSYTWGQTNKKSTPKTSSY 93
             I +SG+IS SY+WG+T  K T K SSY
Sbjct: 367 AGITVSGEISGSYSWGETLTKKTSKESSY 395

The following BLAST results are available for this feature:

BLAST of CsaV3_6G009130.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46563.1	4.2e-46	100.00	hypothetical protein Csa_005179 [Cucumis sativus]	[more]
XP_008458669.1	1.1e-35	83.87	PREDICTED: uncharacterized protein LOC103497997 [Cucumis melo] >TYK24762.1 uncha...	[more]
XP_023521953.1	1.6e-08	43.21	uncharacterized protein LOC111785802 [Cucurbita pepo subsp. pepo] >XP_023544074....	[more]
XP_023543607.1	1.6e-08	43.21	natterin-1-like [Cucurbita pepo subsp. pepo]	[more]
XP_008458670.1	2.7e-08	37.08	PREDICTED: uncharacterized protein LOC103497999 [Cucumis melo] >TYK24763.1 uncha...	[more]

BLAST of CsaV3_6G009130.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G009130.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAR2	2.0e-46	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108610 PE=4 SV=1	[more]
A0A5D3DML5	5.6e-36	83.87	Agglutinin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3C8I1	5.6e-36	83.87	uncharacterized protein LOC103497997 OS=Cucumis melo OX=3656 GN=LOC103497997 PE=...	[more]
A0A5D3DM96	1.3e-08	37.08	Agglutinin domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3C8E4	1.3e-08	37.08	uncharacterized protein LOC103497999 OS=Cucumis melo OX=3656 GN=LOC103497999 PE=...	[more]

BLAST of CsaV3_6G009130.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.170.15.10	Proaerolysin, chain A, domain 3	coord: 4..96 e-value: 4.1E-18 score: 67.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..96
None	No IPR available	PANTHER	PTHR39244	NATTERIN-4	coord: 8..96
None	No IPR available	SUPERFAMILY	56973	Aerolisin/ETX pore-forming domain	coord: 16..96

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_6G009130	CsaV3_6G009130	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G009130.1.exon1	CsaV3_6G009130.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G009130.1.cds1	CsaV3_6G009130.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G009130.1	CsaV3_6G009130.1-protein	polypeptide