CsaV3_6G005390.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G005390.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 4605689 .. 4605978 (-)
Sequence length	288
RNA-Seq Expression	CsaV3_6G005390.1
Synteny	CsaV3_6G005390.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCATCCTTCTCTCCGAGCTCACTGTCGATAGCCGCCACCGCCGCCCCAAGCTACGGGATTCCTTACCCTCCTCCACTGCCACGCCCACTCTTGTTCCATAACGACCACAGCTCTCTTCCACCGTCGCCAGCGGCGGAGGAGTATCCGGCGAAATCCCCCCGGCGTGTAAATGGTGAACGTAAAGATAAGTGCAGTGAAGCTCCAAGAAATGGAAATAAAGATGCAAAGCCAAATAAGGATCCTTGGCCGAAGTGCCCCGTCCCCAAATCGCCACCTCCTCCATTCTAA

mRNA sequence

GCATCCTTCTCTCCGAGCTCACTGTCGATAGCCGCCACCGCCGCCCCAAGCTACGGGATTCCTTACCCTCCTCCACTGCCACGCCCACTCTTGTTCCATAACGACCACAGCTCTCTTCCACCGTCGCCAGCGGCGGAGGAGTATCCGGCGAAATCCCCCCGGCGTGTAAATGGTGAACGTAAAGATAAGTGCAGTGAAGCTCCAAGAAATGGAAATAAAGATGCAAAGCCAAATAAGGATCCTTGGCCGAAGTGCCCCGTCCCCAAATCGCCACCTCCTCCATTCTAA

Coding sequence (CDS)

GCATCCTTCTCTCCGAGCTCACTGTCGATAGCCGCCACCGCCGCCCCAAGCTACGGGATTCCTTACCCTCCTCCACTGCCACGCCCACTCTTGTTCCATAACGACCACAGCTCTCTTCCACCGTCGCCAGCGGCGGAGGAGTATCCGGCGAAATCCCCCCGGCGTGTAAATGGTGAACGTAAAGATAAGTGCAGTGAAGCTCCAAGAAATGGAAATAAAGATGCAAAGCCAAATAAGGATCCTTGGCCGAAGTGCCCCGTCCCCAAATCGCCACCTCCTCCATTCTAA

Protein sequence

ASFSPSSLSIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEYPAKSPRRVNGERKDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF*

Homology

[Close]

BLAST of CsaV3_6G005390.1 vs. NCBI nr
Match: KAE8646677.1 (hypothetical protein Csa_023590, partial [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 3.5e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  ASFSPSSLSIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEYPAKSPRRVNGER 60
          ASFSPSSLSIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEYPAKSPRRVNGER
Sbjct: 1  ASFSPSSLSIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEYPAKSPRRVNGER 60

Query: 61 KDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 96
          KDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF
Sbjct: 61 KDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 95

[Close]

BLAST of CsaV3_6G005390.1 vs. NCBI nr
Match: KAA0054906.1 (hypothetical protein E6C27_scaffold43052G00340 [Cucumis melo var. makuwa] >TYK22694.1 hypothetical protein E5676_scaffold1163G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 1.8e-36
Identity = 82/94 (87.23%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 2   SFSPSSLSIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEYPAKSPRRVNGERK 61
           SFSPSSLSI+ATA PS+GIPYPPPLPR LLFHNDHSSLP SPAAEEYPAK  +RVNGERK
Sbjct: 18  SFSPSSLSISATAIPSHGIPYPPPLPRSLLFHNDHSSLPQSPAAEEYPAKPLQRVNGERK 77

Query: 62  DKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 96
           DKC+EAPRNGNKDAK +KDPWPKCPV KSPPPPF
Sbjct: 78  DKCTEAPRNGNKDAKSSKDPWPKCPVSKSPPPPF 111

[Close]

BLAST of CsaV3_6G005390.1 vs. ExPASy TrEMBL
Match: A0A0A0KEF9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.7e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1   ASFSPSSLSIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEYPAKSPRRVNGER 60
           ASFSPSSLSIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEYPAKSPRRVNGER
Sbjct: 17  ASFSPSSLSIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEYPAKSPRRVNGER 76

Query: 61  KDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 96
           KDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF
Sbjct: 77  KDKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 111

[Close]

BLAST of CsaV3_6G005390.1 vs. ExPASy TrEMBL
Match: A0A5D3DGG9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00110 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 8.5e-37
Identity = 82/94 (87.23%), Postives = 87/94 (92.55%), Query Frame = 0


Query: 2   SFSPSSLSIAATAAPSYGIPYPPPLPRPLLFHNDHSSLPPSPAAEEYPAKSPRRVNGERK 61
           SFSPSSLSI+ATA PS+GIPYPPPLPR LLFHNDHSSLP SPAAEEYPAK  +RVNGERK
Sbjct: 18  SFSPSSLSISATAIPSHGIPYPPPLPRSLLFHNDHSSLPQSPAAEEYPAKPLQRVNGERK 77

Query: 62  DKCSEAPRNGNKDAKPNKDPWPKCPVPKSPPPPF 96
           DKC+EAPRNGNKDAK +KDPWPKCPV KSPPPPF
Sbjct: 78  DKCTEAPRNGNKDAKSSKDPWPKCPVSKSPPPPF 111

The following BLAST results are available for this feature:

BLAST of CsaV3_6G005390.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646677.1	3.5e-45	100.00	hypothetical protein Csa_023590, partial [Cucumis sativus]	[more]
KAA0054906.1	1.8e-36	87.23	hypothetical protein E6C27_scaffold43052G00340 [Cucumis melo var. makuwa] >TYK22...	[more]

BLAST of CsaV3_6G005390.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G005390.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEF9	1.7e-45	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058700 PE=4 SV=1	[more]
A0A5D3DGG9	8.5e-37	87.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_6G005390.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..95

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_6G005390	CsaV3_6G005390	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G005390.1.exon1	CsaV3_6G005390.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G005390.1.cds1	CsaV3_6G005390.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_6G005390.1	CsaV3_6G005390.1-protein	polypeptide