CsaV3_5G013070.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G013070.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat-containing protein
Location	chr5: 9436660 .. 9437880 (+)
Sequence length	468
RNA-Seq Expression	CsaV3_5G013070.1
Synteny	CsaV3_5G013070.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGATCTTTTAGTTTGTTTGTTGCGTTGCGCCTCTCTCCCTTCTCCCGCCTCACTATCTACGCCGTCGACGCCTCCATCTCAGATTCACCTCTCCATCAGGTTTTAAAATCTCAGGGTTAATTTGAAGAATGGTTTGCAAATTTTCTGTGAGGTTGTTGAATGTTTGTGTGTCCTCGCTTTGTAAATCTGAGCAAATGCAGAAAGCTGAAATTGTAATAACAGACGCCATTCGGTTAGGAGTTCTACCTAATGTAGTAACTTACAATTTTTTGATTCATGGATATTGTCAAATTAGGTGCATGGATGCTGCTTATTCCGTTCTTTATAGAATGAGAGAAGCTAGTATTAGTCCAAATGTGATTACTTACAATTCTTTGATAGCTGCTGCAACTAAGAATGGTTCGTTAGAACAATCCCTTAATCTGTTTGAAGAAATGCTTCAATCAGGTATCACTCCCGATGCATTGTGTTACACCACTTTGATGCAATGTTACCACCAGATGGTAAAGCCAGATGAAGGCAATAGGGTTTTTGAGGAGATTCCATTGTGCATTAAAGTTACCGCTTGCCTGCTTGAGAAGTTGAAGGAAGGTTAGTCAAAACAATGCGCCAGTTTTTTTTGTAAAAACAAAATGAAATGGCCACAACGTCAAAGCAGTAAAGCCACATTGAAACGAAGACGATAAGGTTTGAAGAGTGGTTAAAGCGTCCATCTGGATGGCCGTCGAGACCCCACACCTCTGTTCTTCCGGATTTACAAGTAAATTAGCACGGAAGCTCAAACAGAAATACGCTTGGCTCCACTCTCTCATGGACCATCTGGATCCTTTATGGTGTATGATATCCCAAAATGGCTTATTAACTTGGAAAGCCAATTTATTTGATGATTAATTGGGTCACGCAAGCTTCCACTGCCAATGCCATGAGGTGTGACCCTTAAACTGCCAATGCTTTTTTTTTTTTTTTTGTTATTTTTGTAAATTCCTCTCTTAAAAATTCATGATAAGGTTCTGTAAATTTTCGGTGAGTCAGAAAGAATGGGCCCTAAGGAGCAATATTTTATGATTGATTTGGTCTCCGTACGGTTAAAGTGACTATTTTATTGTCCGCTCTTATACAATTTCATTTCAGAATAAGTTATCCAACTTTATTCTTATGCTATACATTATTAACATTTATATCTCTAAATAAAATTCAAGTACTAAAGAACCTTATTTATA

mRNA sequence

ATGGTTTGCAAATTTTCTGTGAGGTTGTTGAATGTTTGTGTGTCCTCGCTTTGTAAATCTGAGCAAATGCAGAAAGCTGAAATTGTAATAACAGACGCCATTCGGTTAGGAGTTCTACCTAATGTAGTAACTTACAATTTTTTGATTCATGGATATTGTCAAATTAGGTGCATGGATGCTGCTTATTCCGTTCTTTATAGAATGAGAGAAGCTAGTATTAGTCCAAATGTGATTACTTACAATTCTTTGATAGCTGCTGCAACTAAGAATGGTTCGTTAGAACAATCCCTTAATCTGTTTGAAGAAATGCTTCAATCAGGTATCACTCCCGATGCATTGTGTTACACCACTTTGATGCAATGTTACCACCAGATGGTAAAGCCAGATGAAGGCAATAGGGTTTTTGAGGAGATTCCATTGTGCATTAAAGTTACCGCTTGCCTGCTTGAGAAGTTGAAGGAAGGTTAG

Coding sequence (CDS)

ATGGTTTGCAAATTTTCTGTGAGGTTGTTGAATGTTTGTGTGTCCTCGCTTTGTAAATCTGAGCAAATGCAGAAAGCTGAAATTGTAATAACAGACGCCATTCGGTTAGGAGTTCTACCTAATGTAGTAACTTACAATTTTTTGATTCATGGATATTGTCAAATTAGGTGCATGGATGCTGCTTATTCCGTTCTTTATAGAATGAGAGAAGCTAGTATTAGTCCAAATGTGATTACTTACAATTCTTTGATAGCTGCTGCAACTAAGAATGGTTCGTTAGAACAATCCCTTAATCTGTTTGAAGAAATGCTTCAATCAGGTATCACTCCCGATGCATTGTGTTACACCACTTTGATGCAATGTTACCACCAGATGGTAAAGCCAGATGAAGGCAATAGGGTTTTTGAGGAGATTCCATTGTGCATTAAAGTTACCGCTTGCCTGCTTGAGAAGTTGAAGGAAGGTTAG

Protein sequence

MVCKFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDAAYSVLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQCYHQMVKPDEGNRVFEEIPLCIKVTACLLEKLKEG*

Homology

[Close]

BLAST of CsaV3_5G013070.1 vs. NCBI nr
Match: KAE8637314.1 (hypothetical protein CSA_019100 [Cucumis sativus] >KGN50867.1 hypothetical protein Csa_004715 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 1.7e-81
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MVCKFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDA 60
           MVCKFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDA
Sbjct: 1   MVCKFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDA 60

Query: 61  AYSVLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQ 120
           AYSVLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQ
Sbjct: 61  AYSVLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQ 120

Query: 121 CYHQMVKPDEGNRVFEEIPLCIKVTACLLEKLKEG 156
           CYHQMVKPDEGNRVFEEIPLCIKVTACLLEKLKEG
Sbjct: 121 CYHQMVKPDEGNRVFEEIPLCIKVTACLLEKLKEG 155

[Close]

BLAST of CsaV3_5G013070.1 vs. NCBI nr
Match: KAA0032156.1 (putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK14401.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 255.8 bits (652), Expect = 2.5e-64
Identity = 126/133 (94.74%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 23  MQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDAAYSVLYRMREASISPNVITYNS 82
           MQKAEI ITDAIRLGVLPNVVTYNFLIHGYCQ RCMDAAYSVLYRMREASISPNVITYNS
Sbjct: 1   MQKAEIAITDAIRLGVLPNVVTYNFLIHGYCQFRCMDAAYSVLYRMREASISPNVITYNS 60

Query: 83  LIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQCYHQMVKPDEGNRVFEEIPLCI 142
           LIAAATKNGSLEQSLNLFEEMLQ GITPDALCYTTLMQCY++MVKPDE NRVFE IPLCI
Sbjct: 61  LIAAATKNGSLEQSLNLFEEMLQLGITPDALCYTTLMQCYNKMVKPDEANRVFEGIPLCI 120

Query: 143 KVTACLLEKLKEG 156
           KVTACLLEKLKEG
Sbjct: 121 KVTACLLEKLKEG 133

[Close]

BLAST of CsaV3_5G013070.1 vs. NCBI nr
Match: XP_022147934.1 (putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia] >XP_022147935.1 putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia] >XP_022147936.1 putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia] >XP_022147937.1 putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia] >XP_022147938.1 putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia])

HSP 1 Score: 202.6 bits (514), Expect = 2.5e-48
Identity = 101/140 (72.14%), Postives = 116/140 (82.86%), Query Frame = 0


Query: 1   MVCKFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDA 60
           MVCKFS + LN+CV+S CKS QMQKAE VI D IRLGVLP+VVTYN L+ GYC+   MDA
Sbjct: 1   MVCKFSTKFLNICVASYCKSRQMQKAEAVIIDGIRLGVLPDVVTYNTLLDGYCRFIGMDA 60

Query: 61  AYSVLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQ 120
           AYSV+YRMREA ISP+VITYNSLIA AT+N SLEQSL+LFEEMLQSGITPD   Y TLM 
Sbjct: 61  AYSVIYRMREAGISPDVITYNSLIAGATRNCSLEQSLDLFEEMLQSGITPDIWSYNTLMH 120

Query: 121 CYHQMVKPDEGNRVFEEIPL 141
           C+ ++ KPDE NRVF++I L
Sbjct: 121 CFFRLGKPDEANRVFKDIIL 140

[Close]

BLAST of CsaV3_5G013070.1 vs. NCBI nr
Match: XP_008442168.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis melo] >XP_008442169.1 PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis melo] >XP_008442170.1 PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis melo])

HSP 1 Score: 201.4 bits (511), Expect = 5.5e-48
Identity = 101/140 (72.14%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1   MVCKFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDA 60
           MVCK+S + LN+CV+S CKS+QMQKAE VI D IR+GVLPNVVTYN LI GYC+   MDA
Sbjct: 1   MVCKYSTKFLNICVASFCKSQQMQKAEAVIIDGIRIGVLPNVVTYNTLIDGYCRFSGMDA 60

Query: 61  AYSVLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQ 120
           AYSVLYRMREA ISP+VITYNSLIA AT+N SLEQSL+LFEEMLQSGITPD   Y TLM 
Sbjct: 61  AYSVLYRMREAGISPDVITYNSLIAGATRNFSLEQSLDLFEEMLQSGITPDIWSYNTLMH 120

Query: 121 CYHQMVKPDEGNRVFEEIPL 141
           C+  + KPDE  RVF++I L
Sbjct: 121 CFFILGKPDEAYRVFKDIIL 140

[Close]

BLAST of CsaV3_5G013070.1 vs. NCBI nr
Match: XP_031740560.1 (putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis sativus] >KAE8649736.1 hypothetical protein Csa_012878 [Cucumis sativus])

HSP 1 Score: 199.5 bits (506), Expect = 2.1e-47
Identity = 100/140 (71.43%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1   MVCKFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDA 60
           MVCK+S + LN+CV+S CKS+QMQKAE VI D IR+GVLP+VVTYN LI GYC+   MDA
Sbjct: 1   MVCKYSTKFLNICVASFCKSQQMQKAEAVIIDGIRIGVLPDVVTYNTLIDGYCRFSGMDA 60

Query: 61  AYSVLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQ 120
           AYSVLYRMREA ISP+VITYNSLIA AT+N SLEQSL+LFEEMLQSGITPD   Y TLM 
Sbjct: 61  AYSVLYRMREAGISPDVITYNSLIAGATRNFSLEQSLDLFEEMLQSGITPDIWSYNTLMH 120

Query: 121 CYHQMVKPDEGNRVFEEIPL 141
           C+  + KPDE  RVF++I L
Sbjct: 121 CFFILGKPDEAYRVFKDIIL 140

[Close]

BLAST of CsaV3_5G013070.1 vs. ExPASy Swiss-Prot
Match: P0C043 (Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana OX=3702 GN=At4g17915 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.7e-31
Identity = 71/129 (55.04%), Postives = 90/129 (69.77%), Query Frame = 0


Query: 6   SVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDAAYSVL 65
           S RLLN+CV SLCK  +++KAE +I D IRLGV P+VVTYN LI GYC+   ++ AY+V 
Sbjct: 12  STRLLNICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVT 71

Query: 66  YRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQCYHQM 125
            RMR+A I P+V TYNSLIA A +   L+  L LF+EML+ GI PD   Y TLM CY ++
Sbjct: 72  RRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKL 131

Query: 126 VKPDEGNRV 135
            K +E  RV
Sbjct: 132 GKHEEAFRV 140

[Close]

BLAST of CsaV3_5G013070.1 vs. ExPASy Swiss-Prot
Match: Q56XR6 (Pentatricopeptide repeat-containing protein At5g46680 OS=Arabidopsis thaliana OX=3702 GN=At5g46680 PE=2 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 4.9e-31
Identity = 67/132 (50.76%), Postives = 91/132 (68.94%), Query Frame = 0


Query: 6   SVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDAAYSVL 65
           S +LLN+ V+SLCK   +++AE ++ D IRLGVLP+V+TYN LI GY +   +D AY+V 
Sbjct: 12  STKLLNISVNSLCKFRNLERAETLLIDGIRLGVLPDVITYNTLIKGYTRFIGIDEAYAVT 71

Query: 66  YRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQCYHQM 125
            RMREA I P+V TYNSLI+ A KN  L + L LF+EML SG++PD   Y TLM CY ++
Sbjct: 72  RRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFKL 131

Query: 126 VKPDEGNRVFEE 138
            +  E  ++  E
Sbjct: 132 GRHGEAFKILHE 143

[Close]

BLAST of CsaV3_5G013070.1 vs. ExPASy Swiss-Prot
Match: Q3ECK2 (Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62680 PE=2 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 4.0e-17
Identity = 48/128 (37.50%), Postives = 76/128 (59.38%), Query Frame = 0


Query: 11  NVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDAAYSVLYRMRE 70
           N  + SLCK++++  A     +  R G+ PNVVTY  L++G C       A  +L  M +
Sbjct: 194 NAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK 253

Query: 71  ASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQ--CYHQMVKP 130
             I+PNVITY++L+ A  KNG + ++  LFEEM++  I PD + Y++L+   C H  +  
Sbjct: 254 KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRI-- 313

Query: 131 DEGNRVFE 137
           DE N++F+
Sbjct: 314 DEANQMFD 319

[Close]

BLAST of CsaV3_5G013070.1 vs. ExPASy Swiss-Prot
Match: Q9CAM8 (Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX=3702 GN=At1g63150 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 49/133 (36.84%), Postives = 73/133 (54.89%), Query Frame = 0


Query: 4   KFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDAAYS 63
           K +V + N  + SLCK   ++ A  + T+    G+ PNVVTYN LI+  C       A  
Sbjct: 255 KANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASR 314

Query: 64  VLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQCYH 123
           +L  M E  I+PNV+T+N+LI A  K G L ++  L EEM+Q  I PD + Y  L+  + 
Sbjct: 315 LLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFC 374

Query: 124 QMVKPDEGNRVFE 137
              + DE  ++F+
Sbjct: 375 MHNRLDEAKQMFK 387

[Close]

BLAST of CsaV3_5G013070.1 vs. ExPASy Swiss-Prot
Match: Q9FLL3 (Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g41170 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 0


Query: 4   KFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDAAYS 63
           K  V   N  + +  K  +   AE +  + IR+ + PN+ TY  LI+G+C   C+D A  
Sbjct: 244 KPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQ 303

Query: 64  VLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQCYH 123
           + Y M      P+V+ Y SLI    K   ++ ++ +F EM Q G+T + + YTTL+Q + 
Sbjct: 304 MFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFG 363

Query: 124 QMVKPDEGNRVFEEI 139
           Q+ KP+    VF  +
Sbjct: 364 QVGKPNVAQEVFSHM 378

[Close]

BLAST of CsaV3_5G013070.1 vs. ExPASy TrEMBL
Match: A0A0A0KR32 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G292240 PE=4 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 8.3e-82
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0


Query: 1   MVCKFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDA 60
           MVCKFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDA
Sbjct: 1   MVCKFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDA 60

Query: 61  AYSVLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQ 120
           AYSVLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQ
Sbjct: 61  AYSVLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQ 120

Query: 121 CYHQMVKPDEGNRVFEEIPLCIKVTACLLEKLKEG 156
           CYHQMVKPDEGNRVFEEIPLCIKVTACLLEKLKEG
Sbjct: 121 CYHQMVKPDEGNRVFEEIPLCIKVTACLLEKLKEG 155

[Close]

BLAST of CsaV3_5G013070.1 vs. ExPASy TrEMBL
Match: A0A5A7SQ67 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00490 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.2e-64
Identity = 126/133 (94.74%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 23  MQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDAAYSVLYRMREASISPNVITYNS 82
           MQKAEI ITDAIRLGVLPNVVTYNFLIHGYCQ RCMDAAYSVLYRMREASISPNVITYNS
Sbjct: 1   MQKAEIAITDAIRLGVLPNVVTYNFLIHGYCQFRCMDAAYSVLYRMREASISPNVITYNS 60

Query: 83  LIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQCYHQMVKPDEGNRVFEEIPLCI 142
           LIAAATKNGSLEQSLNLFEEMLQ GITPDALCYTTLMQCY++MVKPDE NRVFE IPLCI
Sbjct: 61  LIAAATKNGSLEQSLNLFEEMLQLGITPDALCYTTLMQCYNKMVKPDEANRVFEGIPLCI 120

Query: 143 KVTACLLEKLKEG 156
           KVTACLLEKLKEG
Sbjct: 121 KVTACLLEKLKEG 133

[Close]

BLAST of CsaV3_5G013070.1 vs. ExPASy TrEMBL
Match: A0A6J1D2P0 (putative pentatricopeptide repeat-containing protein At4g17915 OS=Momordica charantia OX=3673 GN=LOC111016743 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 1.2e-48
Identity = 101/140 (72.14%), Postives = 116/140 (82.86%), Query Frame = 0


Query: 1   MVCKFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDA 60
           MVCKFS + LN+CV+S CKS QMQKAE VI D IRLGVLP+VVTYN L+ GYC+   MDA
Sbjct: 1   MVCKFSTKFLNICVASYCKSRQMQKAEAVIIDGIRLGVLPDVVTYNTLLDGYCRFIGMDA 60

Query: 61  AYSVLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQ 120
           AYSV+YRMREA ISP+VITYNSLIA AT+N SLEQSL+LFEEMLQSGITPD   Y TLM 
Sbjct: 61  AYSVIYRMREAGISPDVITYNSLIAGATRNCSLEQSLDLFEEMLQSGITPDIWSYNTLMH 120

Query: 121 CYHQMVKPDEGNRVFEEIPL 141
           C+ ++ KPDE NRVF++I L
Sbjct: 121 CFFRLGKPDEANRVFKDIIL 140

[Close]

BLAST of CsaV3_5G013070.1 vs. ExPASy TrEMBL
Match: A0A1S3B4M5 (putative pentatricopeptide repeat-containing protein At4g17915 OS=Cucumis melo OX=3656 GN=LOC103486102 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.7e-48
Identity = 101/140 (72.14%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1   MVCKFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDA 60
           MVCK+S + LN+CV+S CKS+QMQKAE VI D IR+GVLPNVVTYN LI GYC+   MDA
Sbjct: 1   MVCKYSTKFLNICVASFCKSQQMQKAEAVIIDGIRIGVLPNVVTYNTLIDGYCRFSGMDA 60

Query: 61  AYSVLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQ 120
           AYSVLYRMREA ISP+VITYNSLIA AT+N SLEQSL+LFEEMLQSGITPD   Y TLM 
Sbjct: 61  AYSVLYRMREAGISPDVITYNSLIAGATRNFSLEQSLDLFEEMLQSGITPDIWSYNTLMH 120

Query: 121 CYHQMVKPDEGNRVFEEIPL 141
           C+  + KPDE  RVF++I L
Sbjct: 121 CFFILGKPDEAYRVFKDIIL 140

[Close]

BLAST of CsaV3_5G013070.1 vs. ExPASy TrEMBL
Match: A0A6J1IFW8 (putative pentatricopeptide repeat-containing protein At4g17915 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472462 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 5.1e-47
Identity = 99/140 (70.71%), Postives = 115/140 (82.14%), Query Frame = 0


Query: 1   MVCKFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDA 60
           MV K+S + LN+CV+S CKS+QMQKAE VI D IRLGVLP+VVTYN LI GYC+   MDA
Sbjct: 1   MVSKYSTKFLNICVASFCKSQQMQKAEDVIIDGIRLGVLPDVVTYNTLIDGYCRFSGMDA 60

Query: 61  AYSVLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQ 120
           AYSVLYRMREA ISP+VITYNSLIA A++N SLEQSL+LFEEMLQSGITPD   Y TLM 
Sbjct: 61  AYSVLYRMREAGISPDVITYNSLIAGASRNRSLEQSLDLFEEMLQSGITPDIWSYNTLMH 120

Query: 121 CYHQMVKPDEGNRVFEEIPL 141
           C  ++ KPDE NR+F++I L
Sbjct: 121 CLFRLGKPDEANRIFKDIIL 140

[Close]

BLAST of CsaV3_5G013070.1 vs. TAIR 10
Match: AT5G46680.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 135.6 bits (340), Expect = 3.5e-32
Identity = 67/132 (50.76%), Postives = 91/132 (68.94%), Query Frame = 0


Query: 6   SVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDAAYSVL 65
           S +LLN+ V+SLCK   +++AE ++ D IRLGVLP+V+TYN LI GY +   +D AY+V 
Sbjct: 12  STKLLNISVNSLCKFRNLERAETLLIDGIRLGVLPDVITYNTLIKGYTRFIGIDEAYAVT 71

Query: 66  YRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQCYHQM 125
            RMREA I P+V TYNSLI+ A KN  L + L LF+EML SG++PD   Y TLM CY ++
Sbjct: 72  RRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFKL 131

Query: 126 VKPDEGNRVFEE 138
            +  E  ++  E
Sbjct: 132 GRHGEAFKILHE 143

[Close]

BLAST of CsaV3_5G013070.1 vs. TAIR 10
Match: AT1G62680.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 2.9e-18
Identity = 48/128 (37.50%), Postives = 76/128 (59.38%), Query Frame = 0


Query: 11  NVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDAAYSVLYRMRE 70
           N  + SLCK++++  A     +  R G+ PNVVTY  L++G C       A  +L  M +
Sbjct: 194 NAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK 253

Query: 71  ASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQ--CYHQMVKP 130
             I+PNVITY++L+ A  KNG + ++  LFEEM++  I PD + Y++L+   C H  +  
Sbjct: 254 KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRI-- 313

Query: 131 DEGNRVFE 137
           DE N++F+
Sbjct: 314 DEANQMFD 319

[Close]

BLAST of CsaV3_5G013070.1 vs. TAIR 10
Match: AT1G63150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 8.3e-18
Identity = 49/133 (36.84%), Postives = 73/133 (54.89%), Query Frame = 0


Query: 4   KFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDAAYS 63
           K +V + N  + SLCK   ++ A  + T+    G+ PNVVTYN LI+  C       A  
Sbjct: 255 KANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASR 314

Query: 64  VLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQCYH 123
           +L  M E  I+PNV+T+N+LI A  K G L ++  L EEM+Q  I PD + Y  L+  + 
Sbjct: 315 LLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFC 374

Query: 124 QMVKPDEGNRVFE 137
              + DE  ++F+
Sbjct: 375 MHNRLDEAKQMFK 387

[Close]

BLAST of CsaV3_5G013070.1 vs. TAIR 10
Match: AT5G41170.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 87.8 bits (216), Expect = 8.3e-18
Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = 0


Query: 4   KFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDAAYS 63
           K  V   N  + +  K  +   AE +  + IR+ + PN+ TY  LI+G+C   C+D A  
Sbjct: 244 KPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQ 303

Query: 64  VLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQCYH 123
           + Y M      P+V+ Y SLI    K   ++ ++ +F EM Q G+T + + YTTL+Q + 
Sbjct: 304 MFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFG 363

Query: 124 QMVKPDEGNRVFEEI 139
           Q+ KP+    VF  +
Sbjct: 364 QVGKPNVAQEVFSHM 378

[Close]

BLAST of CsaV3_5G013070.1 vs. TAIR 10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-17
Identity = 42/125 (33.60%), Postives = 72/125 (57.60%), Query Frame = 0


Query: 14  VSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDAAYSVLYRMREASI 73
           ++  CK+  M+ A  V    I+ G  PNVVTY  LI G C+   +D+A  +L+ M +  +
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 487

Query: 74  SPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQCYHQMVKPDEGNR 133
            PN+ TYNS++    K+G++E+++ L  E   +G+  D + YTTLM  Y +  + D+   
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 547

Query: 134 VFEEI 139
           + +E+
Sbjct: 548 ILKEM 552

The following BLAST results are available for this feature:

BLAST of CsaV3_5G013070.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8637314.1	1.7e-81	100.00	hypothetical protein CSA_019100 [Cucumis sativus] >KGN50867.1 hypothetical prote...	[more]
KAA0032156.1	2.5e-64	94.74	putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] ...	[more]
XP_022147934.1	2.5e-48	72.14	putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charan...	[more]
XP_008442168.1	5.5e-48	72.14	PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucum...	[more]
XP_031740560.1	2.1e-47	71.43	putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis sativus]...	[more]

BLAST of CsaV3_5G013070.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C043	3.7e-31	55.04	Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis th...	[more]
Q56XR6	4.9e-31	50.76	Pentatricopeptide repeat-containing protein At5g46680 OS=Arabidopsis thaliana OX...	[more]
Q3ECK2	4.0e-17	37.50	Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidop...	[more]
Q9CAM8	1.2e-16	36.84	Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX...	[more]
Q9FLL3	1.2e-16	32.59	Pentatricopeptide repeat-containing protein At5g41170, mitochondrial OS=Arabidop...	[more]

BLAST of CsaV3_5G013070.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR32	8.3e-82	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G292240 PE=4 SV=1	[more]
A0A5A7SQ67	1.2e-64	94.74	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A6J1D2P0	1.2e-48	72.14	putative pentatricopeptide repeat-containing protein At4g17915 OS=Momordica char...	[more]
A0A1S3B4M5	2.7e-48	72.14	putative pentatricopeptide repeat-containing protein At4g17915 OS=Cucumis melo O...	[more]
A0A6J1IFW8	5.1e-47	70.71	putative pentatricopeptide repeat-containing protein At4g17915 isoform X1 OS=Cuc...	[more]

BLAST of CsaV3_5G013070.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46680.1	3.5e-32	50.76	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G62680.1	2.9e-18	37.50	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G63150.1	8.3e-18	36.84	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G41170.1	8.3e-18	32.59	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G05670.1	1.4e-17	33.60	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 114..138 e-value: 0.26 score: 11.6
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 30..88 e-value: 2.4E-14 score: 53.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 78..112 e-value: 2.2E-8 score: 31.7 coord: 43..77 e-value: 4.3E-9 score: 34.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 41..75 score: 11.8273
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 76..110 score: 12.879585
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 3..154 e-value: 1.6E-34 score: 121.8
None	No IPR available	PANTHER	PTHR47932:SF33	OS02G0793200 PROTEIN	coord: 1..141
None	No IPR available	PANTHER	PTHR47932	ATPASE EXPRESSION PROTEIN 3	coord: 1..141

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_5G013070	CsaV3_5G013070	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G013070.1.exon1	CsaV3_5G013070.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G013070.1.cds1	CsaV3_5G013070.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G013070.1	CsaV3_5G013070.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding