CsaV3_5G010970.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G010970.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Exopolygalacturonase-like
Location	chr5: 6977084 .. 6979278 (-)
Sequence length	1041
RNA-Seq Expression	CsaV3_5G010970.1
Synteny	CsaV3_5G010970.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGAAATCTTAGCCTCATTCAAATCATTCTCTTAGAATTTGCTTGGCAATCCTGTGCTGTCATTTTCAATGACATCACCGGCACTCAAAATCTTCTCAAGGGGATCGTACCAACAACAAATAAGCAGTTTCTTCGTCCTGCAGAAGCACCTCGGCATCTTGGCTTTAATACTCTTCCCGATATTGGCGGCACGGTGAATGACATTAACGCAAATGTTGATCTAAATGAGAATGGTGGGTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTGATGGAAAGACTGATGATGCACAAGTGAGAAATATCAACATACACTAACTTCAAACCTTTTAATTTAACTAGTTAATTATCTTTAAATTGATGACTATAGAAAATTGTATATATTTTTTGCTATTAAATTCTACCGTTATATTATTCTAAACCGATCTCAATTTTTCTTCTATTCTTTTTTGGTAGATATGGATGGTACAATTATTTCAACATTTTTTGGCAAAAAGAGTTGTAATTATTTTTTTATTTTCCATTTGATAGGCATTCATGACAACATGGATTGCAGCTTGTCGGAACACAGTCGGTCCGGCGAAGTTCTTGATCCCACAAGGCACATTTCTAGTGGGGCCGGTGACTTTCGCTGGTCCGTGCAAAAGTTATCCGATCACCCTCGAAAATCAAGGAACTGTAAAGGCCACGACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGATGGCCAAGGCCTCTCAGTTTGGCCCTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCGTAACTATATATTTTTGCCTTTCATTTTAAATTACAAGTGCTTTACACTCTAAACTTTTCGATTTGTGTCTAATACGTATCTAAAAAAAACCTGCAAGAGACAAAACATATTTAAAAATAAAAATTATTTTAAATTACAAAAACTATTAAAATTATTTAGAATATATAGCAAAATTCAATATGAAATTTTACTTTAAATATTTTTATTTATTATGCTATATTCGAAAATGTCTTTTCAACGATGGTGATTAATTCTTTGATTTTTTTTTGCAGTCGATTAAATTTACGAGATTAAATCACACGATTGTTGATGGCCTCACTTCGATAAATAGCATGGGGTTTCACACTTCTGTATTCTATTGCTACAATTTCACTGCTACTAACATGAAAATTATAGCTCCACATAATAGTCCCAACACCGATGGAACGCATCTTAGCACCTCAAAATTGGTCACCATTGCCAACAGTGTCATTGGCACCGGTGATGATTGTGTCTCCATTGGCCATAGTACTGAAAATATCACCGTCACCAATGTCACTTGCGGCCCTGGACATGGCCTTAGGTAAATAGTGCATTTTTTAAAAAAGAAATTAAAGATTAAATAGACACAAAGGAAAACATCTAAAAGCTTTCCATTATTCATTTTTTTTCAGTGTGGGCAGCTTGGGCAAGTACTCGAAAGAAAAGGGTGTCTACGACGTTCTAGTAAAGAACTGCACCATTTTCAATGCCACCAATGGTGCCAGAATCAAGACATGGGCTAGCCGTATCTCGGGGTTAGCCTCGAGAATTATCTTTGAAGACATTGTAATGTACAACGTAAAAAATCCTATAATTATCGATCAAACCTACAGCACTAAAAAGAAGAAGGTAAATAATAACAATAAAAACTAACCATGTTAATTAGTTTAATTCAGTCGAGATGTCAAGACCACAAAATGAGAGGGTTAAGAAAATGTTAATCTAAAATTGAGATGTTCAGATGCACTCTCTAATGTTTCTTCTTCTTGTATATCTTATTAAAAGAAAATGATGATCTTAATCTTTAGAGTTTAATAGTGATTTAACGACAACATGTTACTAAACTTACATGTGCATGCAGGAATCAAATTGGAAGGTTAGCAATGTACAGTTCAAGAACATTCGGGGAACATCGACAACGAATGTGGCAGTGTTGTTGGAGTGTAGCAAGTTGTTTCCATGCGAAGGGGTGGAGTTGAGGGACATTAACTTGAGTTATGGAGGCACCAACTTGAGAAATACGACCATTGTTTCTTCATGTTCAAATGCAAAGATTGCTACTTTTGGGGTTCAAAAGCCACCACCTTGTGTTGTATAA

mRNA sequence

ATGACAAGAAATCTTAGCCTCATTCAAATCATTCTCTTAGAATTTGCTTGGCAATCCTGTGCTGTCATTTTCAATGACATCACCGGCACTCAAAATCTTCTCAAGGGGATCGTACCAACAACAAATAAGCAGTTTCTTCGTCCTGCAGAAGCACCTCGGCATCTTGGCTTTAATACTCTTCCCGATATTGGCGGCACGGTGAATGACATTAACGCAAATGTTGATCTAAATGAGAATGGTGGGTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTGATGGAAAGACTGATGATGCACAAATATGGATGGCATTCATGACAACATGGATTGCAGCTTGTCGGAACACAGTCGGTCCGGCGAAGTTCTTGATCCCACAAGGCACATTTCTAGTGGGGCCGGTGACTTTCGCTGGTCCGTGCAAAAGTTATCCGATCACCCTCGAAAATCAAGGAACTAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGATGGCCAAGGCCTCTCAGTTTGGCCCTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCTGTGGGCAGCTTGGGCAAGTACTCGAAAGAAAAGGGTGTCTACGACGTTCTAGTAAAGAACTGCACCATTTTCAATGCCACCAATGGTGCCAGAATCAAGACATGGGCTAGCCGTATCTCGGGGTTAGCCTCGAGAATTATCTTTGAAGACATTGTAATGTACAACGTAAAAAATCCTATAATTATCGATCAAACCTACAGCACTAAAAAGAAGAAGGAATCAAATTGGAAGGTTAGCAATGTACAGTTCAAGAACATTCGGGGAACATCGACAACGAATGTGGCAGTGTTGTTGGAGTGTAGCAAGTTGTTTCCATGCGAAGGGGTGGAGTTGAGGGACATTAACTTGAGTTATGGAGGCACCAACTTGAGAAATACGACCATTGTTTCTTCATGTTCAAATGCAAAGATTGCTACTTTTGGGGTTCAAAAGCCACCACCTTGTGTTGTATAA

Coding sequence (CDS)

ATGACAAGAAATCTTAGCCTCATTCAAATCATTCTCTTAGAATTTGCTTGGCAATCCTGTGCTGTCATTTTCAATGACATCACCGGCACTCAAAATCTTCTCAAGGGGATCGTACCAACAACAAATAAGCAGTTTCTTCGTCCTGCAGAAGCACCTCGGCATCTTGGCTTTAATACTCTTCCCGATATTGGCGGCACGGTGAATGACATTAACGCAAATGTTGATCTAAATGAGAATGGTGGGTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTGATGGAAAGACTGATGATGCACAAATATGGATGGCATTCATGACAACATGGATTGCAGCTTGTCGGAACACAGTCGGTCCGGCGAAGTTCTTGATCCCACAAGGCACATTTCTAGTGGGGCCGGTGACTTTCGCTGGTCCGTGCAAAAGTTATCCGATCACCCTCGAAAATCAAGGAACTAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGATGGCCAAGGCCTCTCAGTTTGGCCCTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCTGTGGGCAGCTTGGGCAAGTACTCGAAAGAAAAGGGTGTCTACGACGTTCTAGTAAAGAACTGCACCATTTTCAATGCCACCAATGGTGCCAGAATCAAGACATGGGCTAGCCGTATCTCGGGGTTAGCCTCGAGAATTATCTTTGAAGACATTGTAATGTACAACGTAAAAAATCCTATAATTATCGATCAAACCTACAGCACTAAAAAGAAGAAGGAATCAAATTGGAAGGTTAGCAATGTACAGTTCAAGAACATTCGGGGAACATCGACAACGAATGTGGCAGTGTTGTTGGAGTGTAGCAAGTTGTTTCCATGCGAAGGGGTGGAGTTGAGGGACATTAACTTGAGTTATGGAGGCACCAACTTGAGAAATACGACCATTGTTTCTTCATGTTCAAATGCAAAGATTGCTACTTTTGGGGTTCAAAAGCCACCACCTTGTGTTGTATAA

Protein sequence

MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTNGSPLKILLVSSSPAPASLMAKASQFGPTTTARKTTYANFFQSVGSLGKYSKEKGVYDVLVKNCTIFNATNGARIKTWASRISGLASRIIFEDIVMYNVKNPIIIDQTYSTKKKKESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSSCSNAKIATFGVQKPPPCVV*

Homology

[Close]

BLAST of CsaV3_5G010970.1 vs. NCBI nr
Match: KAE8648050.1 (hypothetical protein Csa_005883 [Cucumis sativus])

HSP 1 Score: 697.2 bits (1798), Expect = 7.2e-197
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0


Query: 1   MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL 60
           MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL
Sbjct: 1   MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL 60

Query: 61  PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRNTVGP 120
           PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRNTVGP
Sbjct: 61  PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRNTVGP 120

Query: 121 AKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTNGSPLKILLVSSSPAPASLMAKASQFG 180
           AKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTNGSPLKILLVSSSPAPASLMAKASQFG
Sbjct: 121 AKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTNGSPLKILLVSSSPAPASLMAKASQFG 180

Query: 181 PTTTARKTTYANFFQSVGSLGKYSKEKGVYDVLVKNCTIFNATNGARIKTWASRISGLAS 240
           PTTTARKTTYANFFQSVGSLGKYSKEKGVYDVLVKNCTIFNATNGARIKTWASRISGLAS
Sbjct: 181 PTTTARKTTYANFFQSVGSLGKYSKEKGVYDVLVKNCTIFNATNGARIKTWASRISGLAS 240

Query: 241 RIIFEDIVMYNVKNPIIIDQTYSTKKKKESNWKVSNVQFKNIRGTSTTNVAVLLECSKLF 300
           RIIFEDIVMYNVKNPIIIDQTYSTKKKKESNWKVSNVQFKNIRGTSTTNVAVLLECSKLF
Sbjct: 241 RIIFEDIVMYNVKNPIIIDQTYSTKKKKESNWKVSNVQFKNIRGTSTTNVAVLLECSKLF 300

Query: 301 PCEGVELRDINLSYGGTNLRNTTIVSSCSNAKIATFGVQKPPPCVV 347
           PCEGVELRDINLSYGGTNLRNTTIVSSCSNAKIATFGVQKPPPCVV
Sbjct: 301 PCEGVELRDINLSYGGTNLRNTTIVSSCSNAKIATFGVQKPPPCVV 346

[Close]

BLAST of CsaV3_5G010970.1 vs. NCBI nr
Match: XP_031741281.1 (exopolygalacturonase [Cucumis sativus])

HSP 1 Score: 557.4 bits (1435), Expect = 8.9e-155
Identity = 310/456 (67.98%), Postives = 318/456 (69.74%), Query Frame = 0


Query: 1   MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL 60
           MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL
Sbjct: 1   MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL 60

Query: 61  PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRNTVGP 120
           PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQ   AFMTTWIAACRNTVGP
Sbjct: 61  PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQ---AFMTTWIAACRNTVGP 120

Query: 121 AKFLIPQGTFLVGPVTFAGPCKSYPITLENQGT--------------------------- 180
           AKFLIPQGTFLVGPVTFAGPCKSYPITLENQGT                           
Sbjct: 121 AKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVKATTDISAYSSPEWFSIEDITGFILT 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 GSGVFDGQGLSVWPYNDCKKNNLCQLLPISIKFTRLNHTIVDGLTSINSMGFHTSVFYCY 240

Query: 241 --NGSPLKILLVSSSP-------APASLMAKASQFGPT--------------TTARKTTY 300
               + +KI+   +SP       + + L+  A+    T              T    T  
Sbjct: 241 NFTATNMKIIAPHNSPNTDGTHLSTSKLVTIANSVIGTGDDCVSIGHSTENITVTNVTCG 300

Query: 301 ANFFQSVGSLGKYSKEKGVYDVLVKNCTIFNATNGARIKTWASRISGLASRIIFEDIVMY 347
                SVGSLGKYSKEKGVYDVLVKNCTIFNATNGARIKTWASRISGLASRIIFEDIVMY
Sbjct: 301 PGHGLSVGSLGKYSKEKGVYDVLVKNCTIFNATNGARIKTWASRISGLASRIIFEDIVMY 360

[Close]

BLAST of CsaV3_5G010970.1 vs. NCBI nr
Match: XP_031745094.1 (exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 525.8 bits (1353), Expect = 2.9e-145
Identity = 297/456 (65.13%), Postives = 313/456 (68.64%), Query Frame = 0


Query: 1   MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL 60
           MTRNLSLIQI+LL FAWQ CAV+F+DITGTQN LKGIVPTTN+QFLRPAEAPR LGF+TL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGFSTL 60

Query: 61  PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRNTVGP 120
           P+IGGTVNDI ANVDLN+NGGSVFDVTKHGAKA+GKTDDAQ   AFMTTWIAACRNTVGP
Sbjct: 61  PNIGGTVNDIKANVDLNQNGGSVFDVTKHGAKANGKTDDAQ---AFMTTWIAACRNTVGP 120

Query: 121 AKFLIPQGTFLVGPVTFAGPCKSYPITLENQGT--------------------------N 180
           AKFLIPQGTFLVGPVTFAGPCKS+PITLENQGT                           
Sbjct: 121 AKFLIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILT 180

Query: 181 GS-------------------------PLKI-------LLVSSSPAPASLMAKASQF--- 240
           GS                         P+ I        +V    +  S+    S F   
Sbjct: 181 GSGVFDGQGLSVWPYNDCKKNNLCQLLPISIKFTRLNHTIVDGLTSVNSMGFHTSVFYCY 240

Query: 241 --------------GPTT------TARKTTYANFF------------------------- 300
                          P T      T++  T AN                           
Sbjct: 241 NFTATNMKIIAPHNSPNTDGMHLSTSKLVTIANSVIGTGDDCVSIGHSTENITVTNVTCG 300

Query: 301 ----QSVGSLGKYSKEKGVYDVLVKNCTIFNATNGARIKTWASRISGLASRIIFEDIVMY 347
                SVGSLGKYSKEKGVYDVLVKNCTIFNATNGARIKTWAS +SGLASRIIFEDIVMY
Sbjct: 301 PGHGLSVGSLGKYSKEKGVYDVLVKNCTIFNATNGARIKTWASPVSGLASRIIFEDIVMY 360

[Close]

BLAST of CsaV3_5G010970.1 vs. NCBI nr
Match: XP_031745103.1 (exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 495.4 bits (1274), Expect = 4.1e-136
Identity = 278/442 (62.90%), Postives = 293/442 (66.29%), Query Frame = 0


Query: 15  FAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANV 74
           FA Q CAVIF+D+TGTQNLLKGIVP  NKQFLRPAEAPRHLGF+TLP+IGGTVNDI ANV
Sbjct: 63  FACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAEAPRHLGFSTLPNIGGTVNDIKANV 122

Query: 75  DLNENGGSVFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRNTVGPAKFLIPQGTFLVGP 134
           DLNENGGSVFDVTKHGAK DG+TDDA    AFMTTWIAACRNTVGP KFLIPQGTFLVGP
Sbjct: 123 DLNENGGSVFDVTKHGAKGDGETDDAH---AFMTTWIAACRNTVGPTKFLIPQGTFLVGP 182

Query: 135 VTFAGPCKSYPITLENQGTNGSPLKILLVSS----------------------------- 194
           VTFAGPCKS+PITLENQGT  +   I   SS                             
Sbjct: 183 VTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSLEDITGFILTGSGVFDGQGLSVWA 242

Query: 195 ----------SPAPASL------------MAKASQFG----------------------- 254
                      P P S+            +   +  G                       
Sbjct: 243 YNDCKKNNLCQPLPISIKFTRLNHTIVDGLTSINSMGFHTSVFYCYNFTATNMKIIAPHN 302

Query: 255 -PTT------TARKTTYANFF-----------------------------QSVGSLGKYS 314
            P T      T++  T AN                                SVGSLGKYS
Sbjct: 303 SPNTDGMHLSTSKLVTIANSIIGTGDDCVSIGHSTENITITNVTCGPGHGLSVGSLGKYS 362

Query: 315 KEKGVYDVLVKNCTIFNATNGARIKTWASRISGLASRIIFEDIVMYNVKNPIIIDQTYST 347
           KEKGVYDVLVKNCTIFNATNGARIKTWAS ISGLASRIIFEDIVMY VKNPIIIDQTY T
Sbjct: 363 KEKGVYDVLVKNCTIFNATNGARIKTWASPISGLASRIIFEDIVMYGVKNPIIIDQTYGT 422

[Close]

BLAST of CsaV3_5G010970.1 vs. NCBI nr
Match: KAA0048661.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >KAA0048665.1 exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK18163.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 469.9 bits (1208), Expect = 1.9e-128
Identity = 270/460 (58.70%), Postives = 292/460 (63.48%), Query Frame = 0


Query: 1   MTRNLSL-IQIILLEFAWQSCAVI---FNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLG 60
           MTRNLSL IQI+LL FA Q  A +    +D+TGT+NLLK  VPT N+QFLRPA APR LG
Sbjct: 1   MTRNLSLVIQILLLVFASQCSAKVAATLDDVTGTENLLKVTVPTVNEQFLRPAGAPRRLG 60

Query: 61  FNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRN 120
             TLPDIG TVNDI AN+ LNENGGSVFDVTKHGAKADG+TDDAQ   AFMTTWIAACRN
Sbjct: 61  IGTLPDIGSTVNDIRANIVLNENGGSVFDVTKHGAKADGETDDAQ---AFMTTWIAACRN 120

Query: 121 TVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGT----------------------- 180
           TVGPAKFLIPQGT+LVGPVTFAGPCKS+PITLENQGT                       
Sbjct: 121 TVGPAKFLIPQGTYLVGPVTFAGPCKSFPITLENQGTVKATTDISEYSSPEWFSIEDITG 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 FILTGSGVFDGQGVTVWPYNDCKKNRFCQLLPISIKFSRLNHTIVDGLTSVNSMGFHTSV 240

Query: 241 ------NGSPLKILLVSSSPAPASLMAKASQFGPTTTA---------------------R 300
                   + +KI+   +SP    +    S+    T +                      
Sbjct: 241 FYCYNFTATNMKIIAPHNSPNTDGMHLSTSKLVTITNSVIGTGDDCVSIGHSTENIVVTN 300

Query: 301 KTTYANFFQSVGSLGKYSKEKGVYDVLVKNCTIFNATNGARIKTWASRISGLASRIIFED 347
            T       SVGSLGKYSKEK VY+VLVKNCTIFNATNGARIKTWASRISGLAS IIFED
Sbjct: 301 VTCGPGHGLSVGSLGKYSKEKSVYNVLVKNCTIFNATNGARIKTWASRISGLASGIIFED 360

[Close]

BLAST of CsaV3_5G010970.1 vs. ExPASy Swiss-Prot
Match: Q39766 (Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.7e-31
Identity = 113/373 (30.29%), Postives = 148/373 (39.68%), Query Frame = 0


Query: 86  VTKHGAKADGKTDDAQIWMAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYP 145
           V K GAKADGKTD   +   F+  W  AC  +V P+  +IP+GT+L+  V   GPCK+ P
Sbjct: 32  VAKFGAKADGKTD---LSKPFLDAWKEACA-SVTPSTVVIPKGTYLLSKVNLEGPCKA-P 91

Query: 146 ITLENQGTNGSP-----------LKILLVSS----------------------------S 205
           I +  QGT  +P           ++   V +                            S
Sbjct: 92  IEINVQGTIQAPADPSAFKDPNWVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRS 151

Query: 206 PAPASL----MAKASQFGPTTTARKTTYANFFQ--------------------------- 265
             P ++    +  A     T+   K  + N F                            
Sbjct: 152 KLPVNIRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGK 211

Query: 266 ----------------------------------------SVGSLGKYSKEKGVYDVLVK 325
                                                   S+GSLGK+  E+ V  + + 
Sbjct: 212 SEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKIS 271

Query: 326 NCTIFNATNGARIKTWASRISGLASRIIFEDIVMYNVKNPIIIDQTY----STKKKKESN 345
           NCTI N +NGARIKTW     G  S I FEDI M NV +PI+IDQ Y      KK +ES 
Sbjct: 272 NCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESK 331

[Close]

BLAST of CsaV3_5G010970.1 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.9e-31
Identity = 113/373 (30.29%), Postives = 148/373 (39.68%), Query Frame = 0


Query: 86  VTKHGAKADGKTDDAQIWMAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYP 145
           V K GAKADGKTD   +   F+  W  AC  +V P+  +IP+GT+L+  V   GPCK+ P
Sbjct: 32  VAKFGAKADGKTD---LSKPFLDAWKEACA-SVTPSTVVIPKGTYLLSKVNLEGPCKA-P 91

Query: 146 ITLENQGTNGSP-----------LKILLVSS----------------------------S 205
           I +  QGT  +P           ++   V +                            S
Sbjct: 92  IEINVQGTIQAPADPSAFKDPNWVRFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRS 151

Query: 206 PAPASL----MAKASQFGPTTTARKTTYANFFQ--------------------------- 265
             P ++    +  A     T+   K  + N F                            
Sbjct: 152 KLPVNIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGK 211

Query: 266 ----------------------------------------SVGSLGKYSKEKGVYDVLVK 325
                                                   S+GSLGK+  E+ V  + + 
Sbjct: 212 SEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKIS 271

Query: 326 NCTIFNATNGARIKTWASRISGLASRIIFEDIVMYNVKNPIIIDQTY----STKKKKESN 345
           NCTI N +NGARIKTW     G  S I FEDI M NV +PI+IDQ Y      KK +ES 
Sbjct: 272 NCTITNTSNGARIKTWPGEHGGAVSEIHFEDITMNNVSSPILIDQQYCPWNKCKKNEESK 331

[Close]

BLAST of CsaV3_5G010970.1 vs. ExPASy Swiss-Prot
Match: P49062 (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 6.4e-31
Identity = 115/381 (30.18%), Postives = 154/381 (40.42%), Query Frame = 0


Query: 77  NENGGSVFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVT 136
           N    +V+D+TK GA  DG T+    + AF+ TWI  C + V PA  L+P+GTFL GPV 
Sbjct: 45  NSGNPTVYDITKFGAVGDGSTN---TFKAFLNTWIQVCDSPV-PATLLVPKGTFLAGPVI 104

Query: 137 FAGPCKSY----------------------------PITLENQGT--------------- 196
           FAGPCKS                              + L   GT               
Sbjct: 105 FAGPCKSKVTVNVIGTIIATTSGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCG 164

Query: 197 ---------------NGSPLKILLVSSSPAPA--------------SLMAKASQFGPTTT 256
                          N   ++I  +SS  A A              ++   A    P T 
Sbjct: 165 KKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTD 224

Query: 257 ARKTTYANFFQ-----------------------------------SVGSLGKYSKEKGV 316
               + A+                                      SVGSLGKY  E+ V
Sbjct: 225 GIHLSNADNVSILDSTIATGDDCVSVGRGSNNVTVERVICGPGHGLSVGSLGKYKNEEDV 284

Query: 317 YDVLVKNCTIFNATNGARIKTWASRISGLASRIIFEDIVMYNVKNPIIIDQTYSTKKKKE 345
             + V NCT+    NG RIKTW       A  I FE+I+M +VKNPIIIDQ Y + +  +
Sbjct: 285 SGIHVNNCTMIETDNGLRIKTWGGSDPSKAVDIKFENIIMQSVKNPIIIDQNYGS-RGGD 344

[Close]

BLAST of CsaV3_5G010970.1 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.6e-29
Identity = 74/153 (48.37%), Postives = 90/153 (58.82%), Query Frame = 0


Query: 196 SVGSLGKYSKEKGVYDVLVKNCTIFNATNGARIKTWASRISGLASRIIFEDIVMYNVKNP 255
           SVGSLG+Y  E+ V  + VKNCTI  + NG RIKTW     G AS + F+DI M +V  P
Sbjct: 205 SVGSLGRYKNEESVVGIYVKNCTITGSQNGVRIKTWPKSEPGEASEMHFQDITMNSVGTP 264

Query: 256 IIIDQTY----STKKKKESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDIN 315
           I+IDQ Y        +  S+ K+S + FKNI+GTSTT  AV L CSK FPC GVEL DI+
Sbjct: 265 ILIDQGYCPYNQCTAEVPSSVKLSKISFKNIKGTSTTKEAVKLVCSKSFPCNGVELADID 324

Query: 316 LSYGGTNLRNTTIVSSCSNAKIATFGVQKPPPC 345
           L+Y G   +     S C N K    G Q P  C
Sbjct: 325 LTYSG---KGGPATSVCENIKPTIKGKQIPAIC 354

[Close]

BLAST of CsaV3_5G010970.1 vs. ExPASy Swiss-Prot
Match: Q05967 (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.0e-29
Identity = 116/378 (30.69%), Postives = 157/378 (41.53%), Query Frame = 0


Query: 78  ENGGSVFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTF 137
           E+   VFD+TK+GA +     +A I  A +  +  AC++T  P+  +IP+GTF +  V  
Sbjct: 21  ESQTGVFDITKYGANS-----NADISEALLNAFKEACQST-SPSTIVIPKGTFTMNQVKL 80

Query: 138 AGPCKSYPITLENQGTNGSP-----LKI---LLVS-------------SSPAPASLMAKA 197
            GPCKS P+ L+ Q T  +P     LK+   L V+                A A+   K 
Sbjct: 81  EGPCKS-PLELQIQATLKAPSDPSQLKVGEWLTVNKLDQFTMSGGGILDGQAAAAWECKQ 140

Query: 198 SQ----------FGP---------TTTARKTTYANFFQ---------------------- 257
           S+          F           TT   K+ + N  Q                      
Sbjct: 141 SKKCNKLPNNLSFNSLTNSTIKDITTLDSKSFHVNVNQCKNLTFIRFNVSAPANSPNTDG 200

Query: 258 ---------------------------------------------SVGSLGKYSKEKGVY 317
                                                        SVGSLG    EK V 
Sbjct: 201 IHVSRSSSVNITDSNFSTGDDCISVGDETEQLYITRVTCGPGHGISVGSLGGNPDEKPVV 260

Query: 318 DVLVKNCTIFNATNGARIKTWASRISGLASRIIFEDIVMYNVKNPIIIDQTY----STKK 345
            V V+NCT  N  NG RIKTW +   G+ + + FEDI++ NV NP++IDQ Y       K
Sbjct: 261 GVFVRNCTFTNTDNGVRIKTWPASHPGVVNDVHFEDIIVQNVSNPVVIDQVYCPFNKCNK 320

[Close]

BLAST of CsaV3_5G010970.1 vs. ExPASy TrEMBL
Match: A0A0A0KMA6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222970 PE=3 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 4.6e-133
Identity = 272/420 (64.76%), Postives = 278/420 (66.19%), Query Frame = 0


Query: 34  LKGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKA 93
           L GIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKA
Sbjct: 6   LYGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKA 65

Query: 94  DGKTDDAQIWMAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGT 153
           DGKTDDAQ   AFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGT
Sbjct: 66  DGKTDDAQ---AFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGT 125

Query: 154 NGSPLKILLVSSSP---------------------------------------------- 213
             +   I   SS                                                
Sbjct: 126 VKATTDISAYSSPEWFSLEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPISIKF 185

Query: 214 -----------------------------APASLMAKASQFGPTT------TARKTTYAN 273
                                           ++   A    P T      T++  T AN
Sbjct: 186 TRLNHTIVDGLTSINSMGFHTSVFYCYNFTATNMKIIAPHNSPNTDGMHLSTSKLVTIAN 245

Query: 274 FFQSVG--------------------------SLGKYSKEKGVYDVLVKNCTIFNATNGA 333
                G                          SLGKYSKEKGVYDVLVKNCTIFNATNGA
Sbjct: 246 SIIGTGDDCVSIGHSTENITVTNVTCGPGHGLSLGKYSKEKGVYDVLVKNCTIFNATNGA 305

Query: 334 RIKTWASRISGLASRIIFEDIVMYNVKNPIIIDQTYSTKKKKESNWKVSNVQFKNIRGTS 347
           RIKTWAS +SGLASRIIFEDIVMYNVKNPIIIDQTY TKKKKESNWKVSNVQFKNIRGTS
Sbjct: 306 RIKTWASPVSGLASRIIFEDIVMYNVKNPIIIDQTYGTKKKKESNWKVSNVQFKNIRGTS 365

[Close]

BLAST of CsaV3_5G010970.1 vs. ExPASy TrEMBL
Match: A0A5A7U4W1 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00950 PE=3 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 9.0e-129
Identity = 270/460 (58.70%), Postives = 292/460 (63.48%), Query Frame = 0


Query: 1   MTRNLSL-IQIILLEFAWQSCAVI---FNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLG 60
           MTRNLSL IQI+LL FA Q  A +    +D+TGT+NLLK  VPT N+QFLRPA APR LG
Sbjct: 1   MTRNLSLVIQILLLVFASQCSAKVAATLDDVTGTENLLKVTVPTVNEQFLRPAGAPRRLG 60

Query: 61  FNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRN 120
             TLPDIG TVNDI AN+ LNENGGSVFDVTKHGAKADG+TDDAQ   AFMTTWIAACRN
Sbjct: 61  IGTLPDIGSTVNDIRANIVLNENGGSVFDVTKHGAKADGETDDAQ---AFMTTWIAACRN 120

Query: 121 TVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGT----------------------- 180
           TVGPAKFLIPQGT+LVGPVTFAGPCKS+PITLENQGT                       
Sbjct: 121 TVGPAKFLIPQGTYLVGPVTFAGPCKSFPITLENQGTVKATTDISEYSSPEWFSIEDITG 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 FILTGSGVFDGQGVTVWPYNDCKKNRFCQLLPISIKFSRLNHTIVDGLTSVNSMGFHTSV 240

Query: 241 ------NGSPLKILLVSSSPAPASLMAKASQFGPTTTA---------------------R 300
                   + +KI+   +SP    +    S+    T +                      
Sbjct: 241 FYCYNFTATNMKIIAPHNSPNTDGMHLSTSKLVTITNSVIGTGDDCVSIGHSTENIVVTN 300

Query: 301 KTTYANFFQSVGSLGKYSKEKGVYDVLVKNCTIFNATNGARIKTWASRISGLASRIIFED 347
            T       SVGSLGKYSKEK VY+VLVKNCTIFNATNGARIKTWASRISGLAS IIFED
Sbjct: 301 VTCGPGHGLSVGSLGKYSKEKSVYNVLVKNCTIFNATNGARIKTWASRISGLASGIIFED 360

[Close]

BLAST of CsaV3_5G010970.1 vs. ExPASy TrEMBL
Match: A0A5A7TQ89 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36913G00010 PE=3 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 1.5e-128
Identity = 270/460 (58.70%), Postives = 291/460 (63.26%), Query Frame = 0


Query: 1   MTRNLSL-IQIILLEFAWQSC---AVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLG 60
           MTRNLSL IQI+LL FA Q     A   +D+TGT+NLLK  VPT N+QFLRPA APR LG
Sbjct: 1   MTRNLSLVIQILLLVFASQCSAKDAATLDDVTGTENLLKVTVPTVNEQFLRPAGAPRRLG 60

Query: 61  FNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRN 120
             TLPDIG TVNDI AN+ LNENGGSVFDVTKHGAKADG+TDDAQ   AFMTTWIAACRN
Sbjct: 61  IGTLPDIGSTVNDIRANIVLNENGGSVFDVTKHGAKADGETDDAQ---AFMTTWIAACRN 120

Query: 121 TVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGT----------------------- 180
           TVGPAKFLIPQGT+LVGPVTFAGPCKS+PITLENQGT                       
Sbjct: 121 TVGPAKFLIPQGTYLVGPVTFAGPCKSFPITLENQGTVKATTDISEYSSPEWFSIEDITG 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 FILTGSGVFDGQGVTVWPYNDCKKNRFCQLLPISIKFSRLNHTIVDGLTSVNSMGFHTSV 240

Query: 241 ------NGSPLKILLVSSSPAPASLMAKASQFGPTTTA---------------------R 300
                   + +KI+   +SP    +    S+    T +                      
Sbjct: 241 FYCYNFTATNMKIIAPHNSPNTDGMHLSTSKLVTITNSVIGTGDDCVSIGHSTENIVVTN 300

Query: 301 KTTYANFFQSVGSLGKYSKEKGVYDVLVKNCTIFNATNGARIKTWASRISGLASRIIFED 347
            T       SVGSLGKYSKEK VY+VLVKNCTIFNATNGARIKTWASRISGLAS IIFED
Sbjct: 301 VTCGPGHGLSVGSLGKYSKEKSVYNVLVKNCTIFNATNGARIKTWASRISGLASGIIFED 360

[Close]

BLAST of CsaV3_5G010970.1 vs. ExPASy TrEMBL
Match: A0A1S3BRD3 (exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103492867 PE=3 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.8e-105
Identity = 242/460 (52.61%), Postives = 269/460 (58.48%), Query Frame = 0


Query: 1   MTRNLSLIQIILLEFAWQSC---AVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGF 60
           +TR++ L QI+L  FAWQ C   + I NDI    NL   IV T N+Q   P  AP  LG 
Sbjct: 3   ITRDIGLFQILLWVFAWQCCDKVSAITNDIA---NLNYEIVSTINQQLPSPVAAPGPLGI 62

Query: 61  NTLPDIGGTVN-DINANVDLNENGGSVFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRN 120
            TLPD+   VN DIN N DLN NGGSVF VTKHGAKADGKTDDAQ   AF+TTWI ACRN
Sbjct: 63  ETLPDLDNMVNDDINTNNDLNGNGGSVFHVTKHGAKADGKTDDAQ---AFVTTWIEACRN 122

Query: 121 TVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGT----------------------- 180
           TVGPAK LIP+GT+LVGPVT AGPCKS+PITLENQGT                       
Sbjct: 123 TVGPAKILIPEGTYLVGPVTLAGPCKSFPITLENQGTVKATTDISQYSSPEWFSIEDITG 182

Query: 181 -----------------------NGSPLKILLVSSS---------PAPASLMAK------ 240
                                  N +  ++L +S               SL +K      
Sbjct: 183 FILTGSGVFDGQGVAAWPYNDCKNNNICQLLPISIKFSRLNDTIVDRLTSLNSKGFHMSL 242

Query: 241 --------------ASQFGPTT------TARKTTYANFF--------------------- 300
                         A    P T      T++    AN                       
Sbjct: 243 FSCYNFTATNINIIAPHDSPNTDGIHLSTSKLVNIANSIIGTGDDCVSIGHSTEKITVTN 302

Query: 301 --------QSVGSLGKYSKEKGVYDVLVKNCTIFNATNGARIKTWASRISGLASRIIFED 347
                    SVGSLGKY +EK VYDVLVKNCTIFNATNGARIKT+AS ISG AS IIFED
Sbjct: 303 VTCGPGHGLSVGSLGKYPEEKDVYDVLVKNCTIFNATNGARIKTFASPISGSASGIIFED 362

[Close]

BLAST of CsaV3_5G010970.1 vs. ExPASy TrEMBL
Match: A0A5D3C9J8 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00530 PE=3 SV=1)

HSP 1 Score: 391.0 bits (1003), Expect = 5.3e-105
Identity = 241/460 (52.39%), Postives = 268/460 (58.26%), Query Frame = 0


Query: 1   MTRNLSLIQIILLEFAWQSC---AVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGF 60
           +TR++ L QI+L  FAWQ C   + I NDI    NL   IV T N+Q   P  AP   G 
Sbjct: 3   ITRDIGLFQILLWVFAWQCCDKVSAITNDIA---NLNYEIVSTINQQLPSPVAAPGPFGI 62

Query: 61  NTLPDIGGTVN-DINANVDLNENGGSVFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRN 120
            TLPD+   VN DIN N DLN NGGSVF VTKHGAKADGKTDDAQ   AF+TTWI ACRN
Sbjct: 63  ETLPDLDNMVNDDINTNNDLNGNGGSVFHVTKHGAKADGKTDDAQ---AFVTTWIEACRN 122

Query: 121 TVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGT----------------------- 180
           TVGPAK LIP+GT+LVGPVT AGPCKS+PITLENQGT                       
Sbjct: 123 TVGPAKILIPEGTYLVGPVTLAGPCKSFPITLENQGTVKATTDISQYSSPEWFSIEDITG 182

Query: 181 -----------------------NGSPLKILLVSSS---------PAPASLMAK------ 240
                                  N +  ++L +S               SL +K      
Sbjct: 183 FILTGSGVFDGQGVAAWPYNDCKNNNICQLLPISIKFSRLNDTIVDRLTSLNSKGFHMSL 242

Query: 241 --------------ASQFGPTT------TARKTTYANFF--------------------- 300
                         A    P T      T++    AN                       
Sbjct: 243 FSCYNFTATNINIIAPHDSPNTDGIHLSTSKLVNIANSIIGTGDDCVSIGHSTEKITVTN 302

Query: 301 --------QSVGSLGKYSKEKGVYDVLVKNCTIFNATNGARIKTWASRISGLASRIIFED 347
                    SVGSLGKY +EK VYDVLVKNCTIFNATNGARIKT+AS ISG AS IIFED
Sbjct: 303 VTCGPGHGLSVGSLGKYPEEKDVYDVLVKNCTIFNATNGARIKTFASPISGSASGIIFED 362

[Close]

BLAST of CsaV3_5G010970.1 vs. TAIR 10
Match: AT1G02790.1 (polygalacturonase 4 )

HSP 1 Score: 136.3 bits (342), Expect = 4.5e-32
Identity = 115/381 (30.18%), Postives = 154/381 (40.42%), Query Frame = 0


Query: 77  NENGGSVFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVT 136
           N    +V+D+TK GA  DG T+    + AF+ TWI  C + V PA  L+P+GTFL GPV 
Sbjct: 45  NSGNPTVYDITKFGAVGDGSTN---TFKAFLNTWIQVCDSPV-PATLLVPKGTFLAGPVI 104

Query: 137 FAGPCKSY----------------------------PITLENQGT--------------- 196
           FAGPCKS                              + L   GT               
Sbjct: 105 FAGPCKSKVTVNVIGTIIATTSGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCG 164

Query: 197 ---------------NGSPLKILLVSSSPAPA--------------SLMAKASQFGPTTT 256
                          N   ++I  +SS  A A              ++   A    P T 
Sbjct: 165 KKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTD 224

Query: 257 ARKTTYANFFQ-----------------------------------SVGSLGKYSKEKGV 316
               + A+                                      SVGSLGKY  E+ V
Sbjct: 225 GIHLSNADNVSILDSTIATGDDCVSVGRGSNNVTVERVICGPGHGLSVGSLGKYKNEEDV 284

Query: 317 YDVLVKNCTIFNATNGARIKTWASRISGLASRIIFEDIVMYNVKNPIIIDQTYSTKKKKE 345
             + V NCT+    NG RIKTW       A  I FE+I+M +VKNPIIIDQ Y + +  +
Sbjct: 285 SGIHVNNCTMIETDNGLRIKTWGGSDPSKAVDIKFENIIMQSVKNPIIIDQNYGS-RGGD 344

[Close]

BLAST of CsaV3_5G010970.1 vs. TAIR 10
Match: AT2G15450.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 133.3 bits (334), Expect = 3.8e-31
Identity = 121/381 (31.76%), Postives = 162/381 (42.52%), Query Frame = 0


Query: 83  VFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCK 142
           VF+V +HGAK DGKTD+A    AF + W  AC+   G +K  +P+GTF +G V F GPCK
Sbjct: 30  VFNVQRHGAKPDGKTDNAN---AFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCK 89

Query: 143 SYPI-------------------------------------TLENQG----------TNG 202
           + PI                                     TL+ QG          TN 
Sbjct: 90  N-PIEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNP 149

Query: 203 SPLKILLV--------SSSPAPASLMAKASQF-----------GPTTTA----------- 262
           +  K+ +         S+     SL +K   F           G T TA           
Sbjct: 150 NCPKLAMTMGFAFVNNSNIKDITSLNSKMGHFNFFSVHHFNITGVTITAPGDSPNTDGIK 209

Query: 263 ------------------------RKTTYANFFQ---------SVGSLGKYSKEKGVYDV 322
                                     TT  N            SVGSLGK   EK V D+
Sbjct: 210 MGSCSNIQISDTNIGTGDDCIAILSGTTNLNISNVNCGPGHGISVGSLGKNKDEKDVKDL 269

Query: 323 LVKNCTIFNAT-NGARIKTWASRISG-LASRIIFEDIVMYNVKNPIIIDQTY------ST 346
           +V++  IFN T +G RIK W S  S  L S  ++E+I M +V  PI IDQ Y        
Sbjct: 270 IVRD-VIFNGTSDGIRIKNWESSASKILVSNFVYENIQMIDVGKPINIDQKYCPHPPCEH 329

[Close]

BLAST of CsaV3_5G010970.1 vs. TAIR 10
Match: AT2G15460.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-30
Identity = 118/366 (32.24%), Postives = 158/366 (43.17%), Query Frame = 0


Query: 83  VFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCK 142
           VF+V +HGAK DGKTD+A    AF + W  AC+   G +K  +P+GTF +G V F GPCK
Sbjct: 30  VFNVQRHGAKPDGKTDNAN---AFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCK 89

Query: 143 SYPI-------------------------------------TLENQG----------TNG 202
           + PI                                     TL+ QG          TN 
Sbjct: 90  N-PIEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNP 149

Query: 203 SPLKILLV--------SSSPAPASLMAKASQF-----------GPTTTA----------- 262
           +  K+ +         S+     SL +K   F           G T TA           
Sbjct: 150 NCPKLAMTMGFAFVNNSNIKDITSLNSKMGHFNFFSVHHFNITGVTITAPGDSPNTDGIK 209

Query: 263 ------------------------RKTTYANFFQ---------SVGSLGKYSKEKGVYDV 322
                                     TT  N            SVGSLGK   EK V D+
Sbjct: 210 MGSCSNIQISDTNIGTGDDCIAILSGTTNLNISNVNCGPGHGISVGSLGKSKDEKDVKDL 269

Query: 323 LVKNCTIFNAT-NGARIKTWASRISG-LASRIIFEDIVMYNVKNPIIIDQTY------ST 331
           +V++  IFN T +G RIKTW S  S  L S  ++E+I M +V  PI IDQ Y        
Sbjct: 270 IVRD-VIFNGTSDGIRIKTWESSASKILVSNFVYENIQMIDVGKPINIDQKYCPHPPCEH 329

[Close]

BLAST of CsaV3_5G010970.1 vs. TAIR 10
Match: AT1G17150.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 126.7 bits (317), Expect = 3.6e-29
Identity = 114/377 (30.24%), Postives = 149/377 (39.52%), Query Frame = 0


Query: 83  VFDVTKHGAKADGKTDDAQIWMAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCK 142
           VFDV  +GAK DGK D+     AF   W  ACR   GP+K  IP GTF +G VTF GPC 
Sbjct: 32  VFDVRSYGAKGDGKMDNTN---AFTNAWKDACRWN-GPSKMYIPLGTFYLGGVTFVGPCD 91

Query: 143 ---SYPI---------------------------------TLENQG-----------TNG 202
              S+ I                                 TL+ QG            N 
Sbjct: 92  GKISFVIDGTLLAPPNNDDIKKEIWINFRYINYLTVFGDGTLDGQGKKSWSLIDCQKDNN 151

Query: 203 SP-------LKILLVSSSPAPASLMAKASQF--------------------GPTTTARKT 262
            P          +  SS     SL +KA  F                     P T   K 
Sbjct: 152 CPKLAINMGFDFVKNSSMNGITSLNSKAGHFNFLSVDHFSITRVNIIAPSNSPNTDGIKI 211

Query: 263 TYANFFQ-----------------------------------SVGSLGKYSKEKGVYDVL 322
             ++  Q                                   S+GSLGK   EK V  ++
Sbjct: 212 ALSSNMQISNTHISTGDDCIAMLSGNTNFDIYNVKCGPGHGISIGSLGKNKDEKNVNGLM 271

Query: 323 VKNCTIFNATNGARIKTWASRISGL-ASRIIFEDIVMYNVKNPIIIDQTY----STKKKK 346
           V+N      TNG RIKTW S  S +    +++E++ M NV+NPI IDQ Y          
Sbjct: 272 VRNSVFTGTTNGIRIKTWESSASTIRIINLVYENLQMINVENPIGIDQKYCPYPPCSNMG 331

[Close]

BLAST of CsaV3_5G010970.1 vs. TAIR 10
Match: AT4G18180.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 126.7 bits (317), Expect = 3.6e-29
Identity = 75/162 (46.30%), Postives = 98/162 (60.49%), Query Frame = 0


Query: 196 SVGSLGKYSKEKGVYDVLVKNCTIFNATNGARIKTWASRIS-GLASRIIFEDIVMYNVKN 255
           SVGSLG+Y  EK V  ++VK+C I   TNG RIKTWA+      A+ + FE+I+M NV N
Sbjct: 252 SVGSLGRYPNEKDVNGLVVKDCKISGTTNGIRIKTWANSPGLSAATNMTFENIIMNNVTN 311

Query: 256 PIIIDQTY----STKKKKESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDI 315
           PIIIDQ+Y    S      S  ++S + FKNIRGTS++ VAV L CS+  PC+ V L ++
Sbjct: 312 PIIIDQSYCPFSSCISNVPSKVELSEIYFKNIRGTSSSLVAVQLHCSRGMPCKKVYLENV 371

Query: 316 NL----SYGG----TNLRNTTIVSSCSNAKIATFGVQKPPPC 345
           +L    S GG    +N  N  + SSC N +    G Q PPPC
Sbjct: 372 HLDLSSSDGGRKQSSNRGNEAVSSSCRNVRANYIGTQIPPPC 413

The following BLAST results are available for this feature:

BLAST of CsaV3_5G010970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648050.1	7.2e-197	100.00	hypothetical protein Csa_005883 [Cucumis sativus]	[more]
XP_031741281.1	8.9e-155	67.98	exopolygalacturonase [Cucumis sativus]	[more]
XP_031745094.1	2.9e-145	65.13	exopolygalacturonase-like [Cucumis sativus]	[more]
XP_031745103.1	4.1e-136	62.90	exopolygalacturonase-like [Cucumis sativus]	[more]
KAA0048661.1	1.9e-128	58.70	exopolygalacturonase-like [Cucumis melo var. makuwa] >KAA0048665.1 exopolygalact...	[more]

BLAST of CsaV3_5G010970.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39766	3.7e-31	30.29	Polygalacturonase OS=Gossypium barbadense OX=3634 GN=G9 PE=2 SV=1	[more]
Q39786	4.9e-31	30.29	Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1	[more]
P49062	6.4e-31	30.18	Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 ...	[more]
P24548	1.6e-29	48.37	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]
Q05967	6.0e-29	30.69	Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1	[more]

BLAST of CsaV3_5G010970.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMA6	4.6e-133	64.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G222970 PE=3 SV=1	[more]
A0A5A7U4W1	9.0e-129	58.70	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7TQ89	1.5e-128	58.70	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S3BRD3	1.8e-105	52.61	exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103492867 PE=3 SV=1	[more]
A0A5D3C9J8	5.3e-105	52.39	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of CsaV3_5G010970.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02790.1	4.5e-32	30.18	polygalacturonase 4	[more]
AT2G15450.1	3.8e-31	31.76	Pectin lyase-like superfamily protein	[more]
AT2G15460.1	4.2e-30	32.24	Pectin lyase-like superfamily protein	[more]
AT1G17150.1	3.6e-29	30.24	Pectin lyase-like superfamily protein	[more]
AT4G18180.1	3.6e-29	46.30	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 196..323 e-value: 1.5E-33 score: 116.3
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 72..183 e-value: 2.1E-11 score: 45.4 coord: 188..343 e-value: 5.3E-37 score: 129.7
None	No IPR available	PANTHER	PTHR31375:SF158	POLYGALACTURONASE	coord: 1..153
None	No IPR available	PANTHER	PTHR31375:SF158	POLYGALACTURONASE	coord: 196..341
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 1..153 coord: 196..341
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 82..153
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 196..345

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_5G010970	CsaV3_5G010970	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G010970.1.exon6	CsaV3_5G010970.1.exon6	exon
CsaV3_5G010970.1.exon5	CsaV3_5G010970.1.exon5	exon
CsaV3_5G010970.1.exon4	CsaV3_5G010970.1.exon4	exon
CsaV3_5G010970.1.exon3	CsaV3_5G010970.1.exon3	exon
CsaV3_5G010970.1.exon2	CsaV3_5G010970.1.exon2	exon
CsaV3_5G010970.1.exon1	CsaV3_5G010970.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G010970.1.cds6	CsaV3_5G010970.1.cds6	CDS
CsaV3_5G010970.1.cds5	CsaV3_5G010970.1.cds5	CDS
CsaV3_5G010970.1.cds4	CsaV3_5G010970.1.cds4	CDS
CsaV3_5G010970.1.cds3	CsaV3_5G010970.1.cds3	CDS
CsaV3_5G010970.1.cds2	CsaV3_5G010970.1.cds2	CDS
CsaV3_5G010970.1.cds1	CsaV3_5G010970.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G010970.1	CsaV3_5G010970.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity