Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCTCGATACTTTGTCCCCGATCGACAGAAAGTAAAATTGATGTCCAAAATTCAAAGAGTCGGCGATATCACCATGACATGATTTGTAAACAAAATGTATCGATAATCAATAAAAGTGCAATTCTGTAATCATAGAAAAAGGAAACAATCGGGATTCCGAACACCTGGTTTAATGCGTTCCCAAATTAGCGCAACCACAATACGCATTGAGAAATTGAACACGGAGAAGTGGAAAAGAAAGGATTCACCTGAAACAAGCGCCGTGTTCAAAGCCATGAAAATGCTTCAAGCACTCGCTTGTGTATCGCAATGCTTAACTAATTAA mRNA sequence ATGCTCGATACTTTGTCCCCGATCGACAGAAAAAAAAGGAAACAATCGGGATTCCGAACACCTGGTTTAATGCGTTCCCAAATTAGCGCAACCACAATACGCATTGAGAAATTGAACACGGAGAAGTGGAAAAGAAAGGATTCACCTGAAACAAGCGCCGTGTTCAAAGCCATGAAAATGCTTCAAGCACTCGCTTGTGTATCGCAATGCTTAACTAATTAA Coding sequence (CDS) ATGCTCGATACTTTGTCCCCGATCGACAGAAAAAAAAGGAAACAATCGGGATTCCGAACACCTGGTTTAATGCGTTCCCAAATTAGCGCAACCACAATACGCATTGAGAAATTGAACACGGAGAAGTGGAAAAGAAAGGATTCACCTGAAACAAGCGCCGTGTTCAAAGCCATGAAAATGCTTCAAGCACTCGCTTGTGTATCGCAATGCTTAACTAATTAA Protein sequence MLDTLSPIDRKKRKQSGFRTPGLMRSQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKMLQALACVSQCLTN*
Homology
BLAST of CsaV3_5G006580.1 vs. NCBI nr
Match: KGN50500.1 (hypothetical protein Csa_000652 [Cucumis sativus]) HSP 1 Score: 145.6 bits (366), Expect = 1.7e-31 Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
Query: 1 MLDTLSPIDRKKRKQSGFRTPGLMRSQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM 60
MLDTLSPIDRKKRKQSGFRTPGLMRSQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM
Sbjct: 1 MLDTLSPIDRKKRKQSGFRTPGLMRSQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM 60
Query: 61 LQALACVSQCLTN 74
LQALACVSQCLTN
Sbjct: 61 LQALACVSQCLTN 73
BLAST of CsaV3_5G006580.1 vs. ExPASy TrEMBL
Match: A0A0A0KLK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177680 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 8.3e-32 Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
Query: 1 MLDTLSPIDRKKRKQSGFRTPGLMRSQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM 60
MLDTLSPIDRKKRKQSGFRTPGLMRSQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM
Sbjct: 1 MLDTLSPIDRKKRKQSGFRTPGLMRSQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM 60
Query: 61 LQALACVSQCLTN 74
LQALACVSQCLTN
Sbjct: 61 LQALACVSQCLTN 73
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN50500.1 | 1.7e-31 | 100.00 | hypothetical protein Csa_000652 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KLK2 | 8.3e-32 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177680 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..16 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..22 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_5G006580.1.exon1 | CsaV3_5G006580.1.exon1 | exon |
| CsaV3_5G006580.1.exon2 | CsaV3_5G006580.1.exon2 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_5G006580.1.cds1 | CsaV3_5G006580.1.cds1 | CDS |
| CsaV3_5G006580.1.cds2 | CsaV3_5G006580.1.cds2 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_5G006580.1 | CsaV3_5G006580.1-protein | polypeptide |
|
