CsaV3_4G032680.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G032680.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 23063709 .. 23064958 (-)
Sequence length261
RNA-Seq ExpressionCsaV3_4G032680.1
SyntenyCsaV3_4G032680.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCTTCAATTTTTGGTGAAGTGGTTGTTCTTTGTATTAAGATTGACAGTTAATGGCTTTGTTGAGGTGGAGTGTTGGATAATTTGAAGAGGAACTGGAAGAAGGTGGCGATCACTAATATTGTTATACTTGTGTTTCTCATCATTGTTTACTCCATTTTGATGCTGCGCTTTTAAGAACAGCAAGAAGGAGAATCATTATCCTAGATGGAAATGAAGATATTGAATTTTGATTTTTGTTTTTAAGTTCTTTCATTGATGCTCTGTTTTTTGTTTTTTGTCTTGTGTTCTAGTTTCTTCAACTATATAGAGATGTATTGACTATTATTTGCTGTAATATATAAATAAAACTTAGGGACTTTTGTGCTCCTTTGTAATTTTAATAATTTAGACTTTGATTAATATTGAATTTTTGTATAATTAGATTCTGTTTTTTAGTATAAAGAAAAGGGACAGTGGTGTGTTTGGAATTATTCTTTGATTAGCTTAATTACATTTTTTTTTTACTAATAAAGGTGATTAATTTTTTGTTTTTTTAAGAGGCAATTATATATTTGTAATGTCTTAATTATTTAATAATTCATTGCCAAGGTGTCATTGTGTTCTATACATTTTGGTTGTATACAATATTCAAGCAAATAGCAACCAGTATTTGTACTTGTTGGTTTGTGGATCTCGTTAGGGTTAGACTTGGTTGCCTTGTGGGTATGGTCTGTCTACATAGCTTAAATGTGACTAATTCAATTATACACAAAAATTAAGTTTAGGTCCTACTTATCTTCCTTATTTACTGTGGTCAAATTGGATTATTTATAAACTTATCTTTCTTATTTACGGTATAAATTTCCTAGGGAGAAATAAAGTTGGGACTGATTTCATTTCAGCTGTTTTCTCCATTTGGGGTTATGGAAATGGCGTAATTTGTTTTGAATTATTTGATAGGAAGAGGGATTGAGGGAGAATTGCTGGGCATCTGATGGTAACTATTATGCAAAAGTAAGCCAGTTTATTTTTCCTTTTTTAGTTCAAATTTCCTCATTTCTTCCCATTTGTTGCATGTATATGGGTTGGAATTTGACCATTCCTTGTCCTGCATTTGGTCACATTTAGGTCTTGGATATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACTGGCAGCCAGACCTCAACTGCAACTGTCTTTGGACAACATTTTGTATGGTTGTAGTTCAATTTCCAACTTTTATGTTTGTTGTGCTAGATAA

mRNA sequence

ATGCATCTTCAATTTTTGGTGAAGTGGTTGTTCTTTGTATTAAGATTGACAGTTAATGGCTTTGTTGAGGAAGAGGGATTGAGGGAGAATTGCTGGGCATCTGATGGTAACTATTATGCAAAAGTCTTGGATATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACTGGCAGCCAGACCTCAACTGCAACTGTCTTTGGACAACATTTTGTATGGTTGTAGTTCAATTTCCAACTTTTATGTTTGTTGTGCTAGATAA

Coding sequence (CDS)

ATGCATCTTCAATTTTTGGTGAAGTGGTTGTTCTTTGTATTAAGATTGACAGTTAATGGCTTTGTTGAGGAAGAGGGATTGAGGGAGAATTGCTGGGCATCTGATGGTAACTATTATGCAAAAGTCTTGGATATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACTGGCAGCCAGACCTCAACTGCAACTGTCTTTGGACAACATTTTGTATGGTTGTAGTTCAATTTCCAACTTTTATGTTTGTTGTGCTAGATAA

Protein sequence

MHLQFLVKWLFFVLRLTVNGFVEEEGLRENCWASDGNYYAKVLDMMKMRMKDFPIQLAARPQLQLSLDNILYGCSSISNFYVCCAR*
Homology
[Close]
BLAST of CsaV3_4G032680.1 vs. NCBI nr
Match: KGN55012.1 (hypothetical protein Csa_012185 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 1.5e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MHLQFLVKWLFFVLRLTVNGFVEEEGLRENCWASDGNYYAKVLDMMKMRMKDFPIQLAAR 60
          MHLQFLVKWLFFVLRLTVNGFVEEEGLRENCWASDGNYYAKVLDMMKMRMKDFPIQLAAR
Sbjct: 1  MHLQFLVKWLFFVLRLTVNGFVEEEGLRENCWASDGNYYAKVLDMMKMRMKDFPIQLAAR 60

Query: 61 PQLQLSLDNILYGCSSISNFYVCCAR 87
          PQLQLSLDNILYGCSSISNFYVCCAR
Sbjct: 61 PQLQLSLDNILYGCSSISNFYVCCAR 86

[Close]
BLAST of CsaV3_4G032680.1 vs. ExPASy TrEMBL
Match: A0A0A0L365 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G622220 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.2e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MHLQFLVKWLFFVLRLTVNGFVEEEGLRENCWASDGNYYAKVLDMMKMRMKDFPIQLAAR 60
          MHLQFLVKWLFFVLRLTVNGFVEEEGLRENCWASDGNYYAKVLDMMKMRMKDFPIQLAAR
Sbjct: 1  MHLQFLVKWLFFVLRLTVNGFVEEEGLRENCWASDGNYYAKVLDMMKMRMKDFPIQLAAR 60

Query: 61 PQLQLSLDNILYGCSSISNFYVCCAR 87
          PQLQLSLDNILYGCSSISNFYVCCAR
Sbjct: 61 PQLQLSLDNILYGCSSISNFYVCCAR 86

The following BLAST results are available for this feature:
BLAST of CsaV3_4G032680.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55012.11.5e-42100.00hypothetical protein Csa_012185 [Cucumis sativus][more]
BLAST of CsaV3_4G032680.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G032680.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3657.2e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G622220 PE=4 SV=1[more]
BLAST of CsaV3_4G032680.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G032680CsaV3_4G032680gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G032680.1.exon3CsaV3_4G032680.1.exon3exon
CsaV3_4G032680.1.exon2CsaV3_4G032680.1.exon2exon
CsaV3_4G032680.1.exon1CsaV3_4G032680.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G032680.1.cds3CsaV3_4G032680.1.cds3CDS
CsaV3_4G032680.1.cds2CsaV3_4G032680.1.cds2CDS
CsaV3_4G032680.1.cds1CsaV3_4G032680.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G032680.1CsaV3_4G032680.1-proteinpolypeptide