CsaV3_4G027650.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_4G027650.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr4: 16958511 .. 16958755 (+)
Sequence length156
RNA-Seq ExpressionCsaV3_4G027650.1
SyntenyCsaV3_4G027650.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATGGGGGATTTTGGAGAATTAGGGTTTTTCTTGGTTGTTCTTGCCGTCGATTGGAACATTTGTTTCTATCAGGGTTTGTTCTTCCGATGCTAAAGTTTGAGAATTTGGAGTTAGTCTTAGCAATCACTGCACTTCCTTTTCAGTATTTTTATTAATTAAAAGCTGAGGCATCTGATTCGTGTATCACTTCCATGAATTGCGGCTCCGAGACATTGCTTTATGGGAATAAAGAGTTCTAA

mRNA sequence

ATGGGGATGGGGGATTTTGGAGAATTAGGGTTTTTCTTGGTTGTTCTTGCCGTCGATTGGAACATTTGTTTCTATCAGGCTGAGGCATCTGATTCGTGTATCACTTCCATGAATTGCGGCTCCGAGACATTGCTTTATGGGAATAAAGAGTTCTAA

Coding sequence (CDS)

ATGGGGATGGGGGATTTTGGAGAATTAGGGTTTTTCTTGGTTGTTCTTGCCGTCGATTGGAACATTTGTTTCTATCAGGCTGAGGCATCTGATTCGTGTATCACTTCCATGAATTGCGGCTCCGAGACATTGCTTTATGGGAATAAAGAGTTCTAA

Protein sequence

MGMGDFGELGFFLVVLAVDWNICFYQAEASDSCITSMNCGSETLLYGNKEF*
Homology
[Close]
BLAST of CsaV3_4G027650.1 vs. NCBI nr
Match: KGN54501.1 (hypothetical protein Csa_012885 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MGMGDFGELGFFLVVLAVDWNICFYQAEASDSCITSMNCGSETLLYGNKEF 52
          MGMGDFGELGFFLVVLAVDWNICFYQAEASDSCITSMNCGSETLLYGNKEF
Sbjct: 1  MGMGDFGELGFFLVVLAVDWNICFYQAEASDSCITSMNCGSETLLYGNKEF 51

[Close]
BLAST of CsaV3_4G027650.1 vs. ExPASy TrEMBL
Match: A0A0A0L335 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G340520 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.5e-22
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MGMGDFGELGFFLVVLAVDWNICFYQAEASDSCITSMNCGSETLLYGNKEF 52
          MGMGDFGELGFFLVVLAVDWNICFYQAEASDSCITSMNCGSETLLYGNKEF
Sbjct: 1  MGMGDFGELGFFLVVLAVDWNICFYQAEASDSCITSMNCGSETLLYGNKEF 51

The following BLAST results are available for this feature:
BLAST of CsaV3_4G027650.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54501.11.1e-21100.00hypothetical protein Csa_012885 [Cucumis sativus][more]
BLAST of CsaV3_4G027650.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_4G027650.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3355.5e-22100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G340520 PE=4 SV=1[more]
BLAST of CsaV3_4G027650.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_4G027650CsaV3_4G027650gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G027650.1.exon1CsaV3_4G027650.1.exon1exon
CsaV3_4G027650.1.exon2CsaV3_4G027650.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_4G027650.1.cds1CsaV3_4G027650.1.cds1CDS
CsaV3_4G027650.1.cds2CsaV3_4G027650.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_4G027650.1CsaV3_4G027650.1-proteinpolypeptide