Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. CACTCGGATTCAGAGGAGAAGAGAAAGAGTCAAATTCAGATAGCAATAGTCATAAATTTCACACAAAAAGGGTCAAAACAAAGCAGCAGCCCAAGGACTCAAGGAGGAAGAGGAAAGAGATTTCCCTTTCAATATTCAGCGTTTAGCTACAGCAACGCCCCTAATCCACCACCACACCGACTCCGGCCACCCTTCGCGGTGGCGCGTGAATCAGCTGCTGGGTATCTCTCCATGTGA mRNA sequence CACTCGGATTCAGAGGAGAAGAGAAAGAGTCAAATTCAGATAGCAATAGTCATAAATTTCACACAAAAAGGGTCAAAACAAAGCAGCAGCCCAAGGACTCAAGGAGGAAGAGGAAAGAGATTTCCCTTTCAATATTCAGCGTTTAGCTACAGCAACGCCCCTAATCCACCACCACACCGACTCCGGCCACCCTTCGCGGTGGCGCGTGAATCAGCTGCTGGGTATCTCTCCATGTGA Coding sequence (CDS) CACTCGGATTCAGAGGAGAAGAGAAAGAGTCAAATTCAGATAGCAATAGTCATAAATTTCACACAAAAAGGGTCAAAACAAAGCAGCAGCCCAAGGACTCAAGGAGGAAGAGGAAAGAGATTTCCCTTTCAATATTCAGCGTTTAGCTACAGCAACGCCCCTAATCCACCACCACACCGACTCCGGCCACCCTTCGCGGTGGCGCGTGAATCAGCTGCTGGGTATCTCTCCATGTGA Protein sequence HSDSEEKRKSQIQIAIVINFTQKGSKQSSSPRTQGGRGKRFPFQYSAFSYSNAPNPPPHRLRPPFAVARESAAGYLSM*
Homology
BLAST of CsaV3_4G024890.1 vs. NCBI nr
Match: KAE8649525.1 (hypothetical protein Csa_017921, partial [Cucumis sativus]) HSP 1 Score: 157.9 bits (398), Expect = 3.6e-35 Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0
Query: 1 HSDSEEKRKSQIQIAIVINFTQKGSKQSSSPRTQGGRGKRFPFQYSAFSYSNAPNPPPHR 60
HSDSEEKRKSQIQIAIVINFTQKGSKQSSSPRTQGGRGKRFPFQYSAFSYSNAPNPPPHR
Sbjct: 1 HSDSEEKRKSQIQIAIVINFTQKGSKQSSSPRTQGGRGKRFPFQYSAFSYSNAPNPPPHR 60
Query: 61 LRPPFAVARESAAGYLSM 79
LRPPFAVARESAAGYLSM
Sbjct: 61 LRPPFAVARESAAGYLSM 78
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAE8649525.1 | 3.6e-35 | 100.00 | hypothetical protein Csa_017921, partial [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 19..41 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 19..35 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_4G024890.1.exon1 | CsaV3_4G024890.1.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_4G024890.1.cds1 | CsaV3_4G024890.1.cds1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_4G024890.1 | CsaV3_4G024890.1-protein | polypeptide |
|
