CsaV3_4G024290.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G024290.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	cyclin-dependent protein kinase inhibitor SMR13
Location	chr4: 14205600 .. 14207566 (+)
Sequence length	366
RNA-Seq Expression	CsaV3_4G024290.1
Synteny	CsaV3_4G024290.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAATGAAAGGAATCTTCATAAATAACTAATTAGTAGTACTACCTCATCAATTACAAACTCCACCACATTTATATTAAATTCATAACTATATATCCTCATAACCAAAATATCATCAAAAACAGATTCTACAAAGTACACATTTGAATTTCTTTCTTAATTTACTTCGATCATAGCAAGAAATAATTAATATTAAAAAAAAAAAGTTTGTGAGTTATGAAATTGATTCTCATACGGGCAGGGGGCAGGGGGCAGCCACCTGCCCTAAATTAAACTCATGAAAAATAAGCATTAATCCCAAGAAGAGTTGCCTAAAAATTTGAACTCTATCTCCCTCCTTTCTCTCTCTCACTGATTACTACCTCGGGCAGCGGGCAGCCTACCCCTGCTTATAATCAGCTCAAGATGGGCAGGGAAATGCCAATCCCTCTTCTCTCTGTTTCTCTCTCTCTAGGGTTTTGTGGGTTTTTGAACTTCAATCCTTCTCTTTAATGGTTATCTTCCCAAATTCTTTGATACCCTTTTCTTTTTAGAACCAATCCTTTCTAAAGCTTAAATCTTTCGCGTAAACCCCTTTGTTTTTCTTCTTACTCGAAATTCCTCTGTTTTTCCTTCAAAAATGGCGCCTTCAGGAGCAAGAATGGCTACAAGAACTACAAGAAGAGCTTTACCCAACTTGAAGCTAACGAAGAAAATCAAGAAAACGACGAACAAGAAACAACCGCCGCAGAAGATAGAGATTCCAGTTCCCGTCACGCAAAACGACATCGTTGAATTTGGCGACGAGTGTTCCGACGGTGGTTGCAGTACTCCAAAAGCAGAGAGACATAGAATCCCAGAGATTTTGACGTGTCCACCGGCGCCGAAGAAACCAAGAGCTGTTTCCGATTGCTCATTACGACGATCACCCATTGCCTTTTTTGCCCCTCCAGAATTAGAACTCTTCTTCTTTGTTGCCTTGCCGGTGCCGGACATTTCAGTCTGAAGCTCAAAAAAAAAAAAAAAAATCGTGTGTTTATACAAATTTTTACGGACATATGAATGAATCAACCATCAAGTTGTTAATTTTTCTCATCTTTTTTCTTTTTTTTTTTGTTAGATATTAGTTTGAATAAGTTTGTATTTTCTTTTGGTGTGAGATTTTGAAATTAGGTTTGCTGTGTAATATTAATATTATAATATAATTTTGATTTTGGGAATTTCAACAGTGTATCGTATCGTATTGTATTGTATTGTATTGTATTGTAGGGTTAGTTTATTTGTCGTCGTCCCAGAAAGTTTCCCTCGTGATAATTTTTGAAGGTAATTGATGGGTTACTTTATTTTGAAGTGTAATGGGAATGGGTCAATGGTGGCTGCTATTTTCGTTTTGAAAGCTTCAGACTTTAGGGTTTTATGACAGTTCATTGGTGGGAGCAGATTCCAAGAAGAAGATGAAGAAGACGATGATGAGGAGGAGGAGAAAGTGAAACGCCGTCGTTTTAAGAAGCAAGAACTCTGTTTCCCTTTCCTCCATACATTTCCACTTCTTCACACACTTTCTTACATTTTCCACGTGGCCTTTCCTTTCCTTTCTTTTTCTTTTTTAATTTAAAAACTTTTTTCACAAAAATTAAAATTTTGGGTTTTTGTTTGTTTGTTGATATAATTATTTTGAAATTTAAGTATATGTCATCCACACAAATATATAATTCTTTTTTTTTCTCTAAATTGTATAGATATTGATGTGTAATAATTGGGATAGAAACATGAAAGAAAATGTTGCACTTTTCAACAAATTTTAAGTTTTTTTTTTTAACATGGTGAACTAACCTAAACGAAATTGTGGGCATGTTGATGGGTCTCTTCTTCTTGCTTTTGTTCTCTCATTTACACTTTTTGCAGTCGCTTCTCCTTCACTTGTTCGTGATTTTCTCTCTCTCGTGCGTTCTTCTCTGTTATCCCACTGAATCTGATTTATGTTTTGT

mRNA sequence

ATGGCGCCTTCAGGAGCAAGAATGGCTACAAGAACTACAAGAAGAGCTTTACCCAACTTGAAGCTAACGAAGAAAATCAAGAAAACGACGAACAAGAAACAACCGCCGCAGAAGATAGAGATTCCAGTTCCCGTCACGCAAAACGACATCGTTGAATTTGGCGACGAGTGTTCCGACGGTGGTTGCAGTACTCCAAAAGCAGAGAGACATAGAATCCCAGAGATTTTGACGTGTCCACCGGCGCCGAAGAAACCAAGAGCTGTTTCCGATTGCTCATTACGACGATCACCCATTGCCTTTTTTGCCCCTCCAGAATTAGAACTCTTCTTCTTTGTTGCCTTGCCGGTGCCGGACATTTCAGTCTGA

Coding sequence (CDS)

ATGGCGCCTTCAGGAGCAAGAATGGCTACAAGAACTACAAGAAGAGCTTTACCCAACTTGAAGCTAACGAAGAAAATCAAGAAAACGACGAACAAGAAACAACCGCCGCAGAAGATAGAGATTCCAGTTCCCGTCACGCAAAACGACATCGTTGAATTTGGCGACGAGTGTTCCGACGGTGGTTGCAGTACTCCAAAAGCAGAGAGACATAGAATCCCAGAGATTTTGACGTGTCCACCGGCGCCGAAGAAACCAAGAGCTGTTTCCGATTGCTCATTACGACGATCACCCATTGCCTTTTTTGCCCCTCCAGAATTAGAACTCTTCTTCTTTGTTGCCTTGCCGGTGCCGGACATTTCAGTCTGA

Protein sequence

MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDGGCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDISV*

Homology

[Close]

BLAST of CsaV3_4G024290.1 vs. NCBI nr
Match: XP_011653594.1 (cyclin-dependent protein kinase inhibitor SMR13 [Cucumis sativus] >KGN54182.1 hypothetical protein Csa_018192 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 1.7e-60
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG 60
           MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG
Sbjct: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG 60

Query: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS 120
           GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS
Sbjct: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS 120

Query: 121 V 122
           V
Sbjct: 121 V 121

[Close]

BLAST of CsaV3_4G024290.1 vs. NCBI nr
Match: XP_038902266.1 (cyclin-dependent protein kinase inhibitor SMR13 [Benincasa hispida])

HSP 1 Score: 173.7 bits (439), Expect = 9.7e-40
Identity = 96/116 (82.76%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 8   MATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECS--DGGCSTP 67
           MATR TRR LPNLKLTKKIKKT   K+  Q+ +IP  V QNDIV+F DECS  DGGCSTP
Sbjct: 1   MATR-TRRNLPNLKLTKKIKKT---KKQQQQNQIPATV-QNDIVQFTDECSDTDGGCSTP 60

Query: 68  KAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDISV 122
           KAERHRIPEILTCPPAPKKPRAVSDCS RRSPIAFFAPPELELFFFV+LPVPDISV
Sbjct: 61  KAERHRIPEILTCPPAPKKPRAVSDCSFRRSPIAFFAPPELELFFFVSLPVPDISV 111

[Close]

BLAST of CsaV3_4G024290.1 vs. NCBI nr
Match: XP_022986710.1 (cyclin-dependent protein kinase inhibitor SMR13 [Cucurbita maxima])

HSP 1 Score: 161.8 bits (408), Expect = 3.8e-36
Identity = 92/124 (74.19%), Postives = 98/124 (79.03%), Query Frame = 0


Query: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVP-VTQNDIVEFGDECS- 60
           MAPSG +MATR TR  LPNLKL KKIKKT  ++Q  Q+    +P V  ND V F D+CS 
Sbjct: 1   MAPSGGKMATR-TRANLPNLKLNKKIKKTKKQQQQQQQKLKQIPAVIPNDAVHFTDDCSD 60

Query: 61  -DGGCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVP 120
            DGGCSTPKAER RIPEILTCPPAPKKPR  SDCSLRRSPIAFFAPPELEL FF ALPVP
Sbjct: 61  IDGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELEL-FFCALPVP 120

Query: 121 DISV 122
           DISV
Sbjct: 121 DISV 122

[Close]

BLAST of CsaV3_4G024290.1 vs. NCBI nr
Match: XP_023522908.1 (cyclin-dependent protein kinase inhibitor SMR15-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 157.5 bits (397), Expect = 7.2e-35
Identity = 91/123 (73.98%), Postives = 97/123 (78.86%), Query Frame = 0


Query: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECS-- 60
           MAPSG +MATR TR  LPNLKL KKIKK T K+Q  QK++    V  ND V F D+ +  
Sbjct: 1   MAPSGGKMATR-TRANLPNLKLNKKIKK-TKKQQQQQKLKQIPAVILNDAVHFTDDSTDI 60

Query: 61  DGGCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPD 120
           DGGCSTPKAER RIPEILTCPPAPKKPR  SDCSLRRSPIAFFAPPELEL FF ALPVPD
Sbjct: 61  DGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELEL-FFCALPVPD 120

Query: 121 ISV 122
           ISV
Sbjct: 121 ISV 120

[Close]

BLAST of CsaV3_4G024290.1 vs. NCBI nr
Match: KAG7010272.1 (Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.5 bits (397), Expect = 7.2e-35
Identity = 91/123 (73.98%), Postives = 96/123 (78.05%), Query Frame = 0


Query: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECS-- 60
           MAPSG +MATR TR  LPNLKL KKIKKT  KKQ  QK++       ND V F D+ +  
Sbjct: 1   MAPSGGKMATR-TRANLPNLKLNKKIKKT--KKQQQQKLKQIPAAIPNDAVHFTDDSTDI 60

Query: 61  DGGCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPD 120
           DGGCSTPKAER RIPEILTCPPAPKKPR  SDCSLRRSPIAFFAPPELEL FF ALPVPD
Sbjct: 61  DGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELEL-FFCALPVPD 119

Query: 121 ISV 122
           ISV
Sbjct: 121 ISV 119

[Close]

BLAST of CsaV3_4G024290.1 vs. ExPASy Swiss-Prot
Match: F4IWB3 (Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 GN=SMR13 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.6e-15
Identity = 53/109 (48.62%), Postives = 65/109 (59.63%), Query Frame = 0


Query: 8   MATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEI------PVPVTQNDIVEFGDECSDGG 67
           MA++  R+  PN +  KK+ ++  KKQ PQ   I       VP      V      S GG
Sbjct: 1   MASKKARK--PN-RAEKKLTRSCFKKQVPQHNNINTNTIYSVPSPSPAAV----LTSPGG 60

Query: 68  CSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFF 111
           C TPKA++ RIPE+LTCPPAPKK R   +C LRR  I FFAPPE+ELFF
Sbjct: 61  CCTPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

[Close]

BLAST of CsaV3_4G024290.1 vs. ExPASy Swiss-Prot
Match: Q3ECS5 (Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 GN=SMR9 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-13
Identity = 48/123 (39.02%), Postives = 63/123 (51.22%), Query Frame = 0


Query: 1   MAPSGARMATRTTRR---------ALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIV 60
           MA  G +   RTT R           P   +   +  T++    P     P PV+     
Sbjct: 1   MASKGKKPLRRTTTRRRKRSHFKNPSPPCSINSDVTSTSSTSTSPTSTATPSPVS----- 60

Query: 61  EFGDECSDGGCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFF 115
                 ++ GC TP  E+ RIPE+LTCPPAPKK +   +C+LRR  IAFFAPP++ELFF 
Sbjct: 61  ------AESGCCTP--EKSRIPEMLTCPPAPKKQKVAQNCALRRRQIAFFAPPDVELFFV 110

[Close]

BLAST of CsaV3_4G024290.1 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.2e-04
Identity = 25/67 (37.31%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 44  PVTQNDIVEFGDECSDGGCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAP 103
           P++ +       E  D   +TP A+  RIP ++ CPPAPKK +     S    P  FF+P
Sbjct: 37  PISLSSSAVSNTEDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSY--GPREFFSP 96

Query: 104 PELELFF 111
           P+LE  F
Sbjct: 97  PDLETVF 101

[Close]

BLAST of CsaV3_4G024290.1 vs. ExPASy TrEMBL
Match: A0A0A0L0Q1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291940 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 8.2e-61
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG 60
           MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG
Sbjct: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG 60

Query: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS 120
           GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS
Sbjct: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS 120

Query: 121 V 122
           V
Sbjct: 121 V 121

[Close]

BLAST of CsaV3_4G024290.1 vs. ExPASy TrEMBL
Match: A0A6J1JET4 (cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita maxima OX=3661 GN=LOC111484378 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.8e-36
Identity = 92/124 (74.19%), Postives = 98/124 (79.03%), Query Frame = 0


Query: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVP-VTQNDIVEFGDECS- 60
           MAPSG +MATR TR  LPNLKL KKIKKT  ++Q  Q+    +P V  ND V F D+CS 
Sbjct: 1   MAPSGGKMATR-TRANLPNLKLNKKIKKTKKQQQQQQQKLKQIPAVIPNDAVHFTDDCSD 60

Query: 61  -DGGCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVP 120
            DGGCSTPKAER RIPEILTCPPAPKKPR  SDCSLRRSPIAFFAPPELEL FF ALPVP
Sbjct: 61  IDGGCSTPKAERFRIPEILTCPPAPKKPRPASDCSLRRSPIAFFAPPELEL-FFCALPVP 120

Query: 121 DISV 122
           DISV
Sbjct: 121 DISV 122

[Close]

BLAST of CsaV3_4G024290.1 vs. ExPASy TrEMBL
Match: A0A6J1FTJ6 (cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita moschata OX=3662 GN=LOC111448665 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 5.0e-34
Identity = 88/124 (70.97%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVT-QNDIVEFGDECS- 60
           MAPSG +MATR TR  LPNLKL KKIKKT  ++Q  Q+    +P    ND V F D+ + 
Sbjct: 1   MAPSGGKMATR-TRANLPNLKLNKKIKKTKKQQQQQQQKLKQIPAAIPNDAVHFTDDSTD 60

Query: 61  -DGGCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVP 120
            DGGCSTPKAER RIP+ILTCPPAPKKPR  SDCSLRRSPIAFFAPPELEL FF ALPVP
Sbjct: 61  IDGGCSTPKAERFRIPDILTCPPAPKKPRPSSDCSLRRSPIAFFAPPELEL-FFCALPVP 120

Query: 121 DISV 122
           DISV
Sbjct: 121 DISV 122

[Close]

BLAST of CsaV3_4G024290.1 vs. ExPASy TrEMBL
Match: A0A6J1H2X7 (cyclin-dependent protein kinase inhibitor SMR13-like OS=Cucurbita moschata OX=3662 GN=LOC111459621 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.0e-31
Identity = 81/121 (66.94%), Postives = 90/121 (74.38%), Query Frame = 0


Query: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG 60
           MAPSGA+MATR  RR +   K+ KKIKKTT KK   Q     +P  QND+V+F D+   G
Sbjct: 1   MAPSGAKMATR-PRRNIRTSKVNKKIKKTTTKKPQNQ-----IPPPQNDVVQFPDDDGGG 60

Query: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS 120
           G STPKAER RIPEILTCPP PKK R +SDCS RRSPIAFFAPPELELFFF+A   PDIS
Sbjct: 61  GYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIAR--PDIS 113

Query: 121 V 122
           V
Sbjct: 121 V 113

[Close]

BLAST of CsaV3_4G024290.1 vs. ExPASy TrEMBL
Match: A0A6J1D3Z6 (cyclin-dependent protein kinase inhibitor SMR15-like OS=Momordica charantia OX=3673 GN=LOC111017372 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 2.0e-30
Identity = 80/115 (69.57%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG 60
           MAPSG RMA R TR    +LKL KK+KKT  KKQ  QK  +P P T+ND+V+  ++  DG
Sbjct: 1   MAPSGGRMAAR-TRGNSQSLKL-KKMKKT--KKQQQQK--LPAPATENDVVQCSNDDIDG 60

Query: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALP 116
           GCSTP+AER RIPEI+TCPPAPKK R VSDCS RRSPIAFFAPPELELFFF ALP
Sbjct: 61  GCSTPRAERFRIPEIVTCPPAPKKQRPVSDCSFRRSPIAFFAPPELELFFFFALP 109

[Close]

BLAST of CsaV3_4G024290.1 vs. TAIR 10
Match: AT3G20898.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 81.3 bits (199), Expect = 6.1e-16
Identity = 53/109 (48.62%), Postives = 65/109 (59.63%), Query Frame = 0


Query: 8   MATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEI------PVPVTQNDIVEFGDECSDGG 67
           MA++  R+  PN +  KK+ ++  KKQ PQ   I       VP      V      S GG
Sbjct: 1   MASKKARK--PN-RAEKKLTRSCFKKQVPQHNNINTNTIYSVPSPSPAAV----LTSPGG 60

Query: 68  CSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFF 111
           C TPKA++ RIPE+LTCPPAPKK R   +C LRR  I FFAPPE+ELFF
Sbjct: 61  CCTPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

[Close]

BLAST of CsaV3_4G024290.1 vs. TAIR 10
Match: AT1G51355.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20898.1); Has 52 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-14
Identity = 48/123 (39.02%), Postives = 63/123 (51.22%), Query Frame = 0


Query: 1   MAPSGARMATRTTRR---------ALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIV 60
           MA  G +   RTT R           P   +   +  T++    P     P PV+     
Sbjct: 1   MASKGKKPLRRTTTRRRKRSHFKNPSPPCSINSDVTSTSSTSTSPTSTATPSPVS----- 60

Query: 61  EFGDECSDGGCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFF 115
                 ++ GC TP  E+ RIPE+LTCPPAPKK +   +C+LRR  IAFFAPP++ELFF 
Sbjct: 61  ------AESGCCTP--EKSRIPEMLTCPPAPKKQKVAQNCALRRRQIAFFAPPDVELFFV 110

[Close]

BLAST of CsaV3_4G024290.1 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 3.7e-05
Identity = 25/67 (37.31%), Postives = 35/67 (52.24%), Query Frame = 0


Query: 44  PVTQNDIVEFGDECSDGGCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAP 103
           P++ +       E  D   +TP A+  RIP ++ CPPAPKK +     S    P  FF+P
Sbjct: 37  PISLSSSAVSNTEDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSY--GPREFFSP 96

Query: 104 PELELFF 111
           P+LE  F
Sbjct: 97  PDLETVF 101

[Close]

BLAST of CsaV3_4G024290.1 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 33/97 (34.02%), Postives = 48/97 (49.48%), Query Frame = 0


Query: 17  LPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDGGCSTPKAERHRIPEIL 76
           +  + +   +K    K + P +I   V   + D     +ECS    +TP A+  +IPE+L
Sbjct: 22  IAGISIRASLKPVKTKLRAPPEI---VTEVEEDCYNEEEECS----TTPTAKETKIPELL 81

Query: 77  TCPPAPKKPRAVSDCSLRRSPIA--FFAPP-ELELFF 111
            CPPAP+K R    C   RS +   FF PP +LE  F
Sbjct: 82  ECPPAPRKRRPALKC---RSNVVREFFTPPSDLETVF 108

The following BLAST results are available for this feature:

BLAST of CsaV3_4G024290.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653594.1	1.7e-60	100.00	cyclin-dependent protein kinase inhibitor SMR13 [Cucumis sativus] >KGN54182.1 hy...	[more]
XP_038902266.1	9.7e-40	82.76	cyclin-dependent protein kinase inhibitor SMR13 [Benincasa hispida]	[more]
XP_022986710.1	3.8e-36	74.19	cyclin-dependent protein kinase inhibitor SMR13 [Cucurbita maxima]	[more]
XP_023522908.1	7.2e-35	73.98	cyclin-dependent protein kinase inhibitor SMR15-like [Cucurbita pepo subsp. pepo...	[more]
KAG7010272.1	7.2e-35	73.98	Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma...	[more]

BLAST of CsaV3_4G024290.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IWB3	8.6e-15	48.62	Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q3ECS5	2.8e-13	39.02	Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1G3Y4	5.2e-04	37.31	Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CsaV3_4G024290.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Q1	8.2e-61	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291940 PE=4 SV=1	[more]
A0A6J1JET4	1.8e-36	74.19	cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FTJ6	5.0e-34	70.97	cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1H2X7	3.0e-31	66.94	cyclin-dependent protein kinase inhibitor SMR13-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1D3Z6	2.0e-30	69.57	cyclin-dependent protein kinase inhibitor SMR15-like OS=Momordica charantia OX=3...	[more]

BLAST of CsaV3_4G024290.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20898.1	6.1e-16	48.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G51355.1	2.0e-14	39.02	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G60783.1	3.7e-05	37.31	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G40460.1	1.1e-04	34.02	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33142:SF8	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 24..114
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 24..114

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_4G024290	CsaV3_4G024290	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G024290.1.exon1	CsaV3_4G024290.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G024290.1.cds1	CsaV3_4G024290.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G024290.1	CsaV3_4G024290.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032875	regulation of DNA endoreduplication