CsaV3_4G010510.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_4G010510.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr4: 8403777 .. 8404268 (+)
Sequence length	228
RNA-Seq Expression	CsaV3_4G010510.1
Synteny	CsaV3_4G010510.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTATCAATAATATCATTTTGATAATCTTCAAACTGCTTTTCTTCACACTGCTTCTCATCACTACCTCTTCAGCTTTCCAACCCCAACTTCATGAACCTCACTTTCGTAAGATCTCTCCTTCCCATTATTGATCTTCTTTTATTATTTTTCCTTGGTGGGTGTTACGGTTAATATTTCTATAAATTTTAGAAACATATTCCACATATCTAGTAATTTACTTTGCATGAAAATTGTTATTTTTCTTTAACCAATATTTTGTTAAGACTTAAGTTTGAGGTTATAACAAATTAACTAACATTATGAAACTTAATTTGTTGTAAAAAAAAGATTAATTTTGAGTTATAATATGGTAATTGTTTTGAATTAAAGGTAAGAAGATGAGGATGGAGTATAGAAGTGTTAGAAAGGCTGCGTTGGGAGGAAAGCCAGCAGTTTATGATTTCCCTTGGAAAGGTGGTTATAATCCTCCTCACAACAACCGTTGA

mRNA sequence

ATGGCTTCTATCAATAATATCATTTTGATAATCTTCAAACTGCTTTTCTTCACACTGCTTCTCATCACTACCTCTTCAGCTTTCCAACCCCAACTTCATGAACCTCACTTTCGTAAGAAGATGAGGATGGAGTATAGAAGTGTTAGAAAGGCTGCGTTGGGAGGAAAGCCAGCAGTTTATGATTTCCCTTGGAAAGGTGGTTATAATCCTCCTCACAACAACCGTTGA

Coding sequence (CDS)

ATGGCTTCTATCAATAATATCATTTTGATAATCTTCAAACTGCTTTTCTTCACACTGCTTCTCATCACTACCTCTTCAGCTTTCCAACCCCAACTTCATGAACCTCACTTTCGTAAGAAGATGAGGATGGAGTATAGAAGTGTTAGAAAGGCTGCGTTGGGAGGAAAGCCAGCAGTTTATGATTTCCCTTGGAAAGGTGGTTATAATCCTCCTCACAACAACCGTTGA

Protein sequence

MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVYDFPWKGGYNPPHNNR*

Homology

[Close]

BLAST of CsaV3_4G010510.1 vs. NCBI nr
Match: KGN53822.1 (hypothetical protein Csa_015192 [Cucumis sativus])

HSP 1 Score: 153.7 bits (387), Expect = 6.5e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60
          MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY
Sbjct: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60

Query: 61 DFPWKGGYNPPHNNR 76
          DFPWKGGYNPPHNNR
Sbjct: 61 DFPWKGGYNPPHNNR 75

[Close]

BLAST of CsaV3_4G010510.1 vs. NCBI nr
Match: TYK18975.1 (hypothetical protein E5676_scaffold418G00680 [Cucumis melo var. makuwa])

HSP 1 Score: 132.5 bits (332), Expect = 1.5e-27
Identity = 68/75 (90.67%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60
          MASI NII IIFKLLFFTLLLITTS+AFQPQLHEP FRKKMRMEYRSVRK ALG KPAVY
Sbjct: 1  MASI-NIIWIIFKLLFFTLLLITTSTAFQPQLHEPRFRKKMRMEYRSVRKGALGAKPAVY 60

Query: 61 DFPWKGGYNPPHNNR 76
          DFPWKGGYNPP NNR
Sbjct: 61 DFPWKGGYNPPDNNR 74

[Close]

BLAST of CsaV3_4G010510.1 vs. NCBI nr
Match: XP_022141390.1 (uncharacterized protein LOC111011803 [Momordica charantia])

HSP 1 Score: 73.6 bits (179), Expect = 8.5e-10
Identity = 42/75 (56.00%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 1   MASINNIILIIFKLLFFTLLLITTS-SAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAV 60
           MAS+   I  + KL FF LLLI +  SA  P +H+    +K+ MEYRSV KA L  K A 
Sbjct: 42  MASLR--ISFVLKLFFFALLLIASRVSASTPSIHKRPRIRKLGMEYRSVGKAVLRAKAAS 101

Query: 61  YDFPWKGGYNPPHNN 75
           YDFPWKGGYNPP+NN
Sbjct: 102 YDFPWKGGYNPPNNN 114

[Close]

BLAST of CsaV3_4G010510.1 vs. NCBI nr
Match: KAG6602002.1 (hypothetical protein SDJN03_07235, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.8 bits (164), Expect = 4.7e-08
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 14 LLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVYDFPWKGGYNPPHN 73
          L+ FT+     S++FQ    +PH R K+ MEY +V KAAL  KPAVYDFPWKGGY+PP N
Sbjct: 18 LVAFTVSAADISASFQ----KPHIR-KLSMEYTTVEKAALRAKPAVYDFPWKGGYHPPAN 74

Query: 74 NR 76
          +R
Sbjct: 78 DR 74

[Close]

BLAST of CsaV3_4G010510.1 vs. ExPASy TrEMBL
Match: A0A0A0KZM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152270 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 3.1e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60
          MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY
Sbjct: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60

Query: 61 DFPWKGGYNPPHNNR 76
          DFPWKGGYNPPHNNR
Sbjct: 61 DFPWKGGYNPPHNNR 75

[Close]

BLAST of CsaV3_4G010510.1 vs. ExPASy TrEMBL
Match: A0A5D3D619 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold418G00680 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.5e-28
Identity = 68/75 (90.67%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 1  MASINNIILIIFKLLFFTLLLITTSSAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAVY 60
          MASI NII IIFKLLFFTLLLITTS+AFQPQLHEP FRKKMRMEYRSVRK ALG KPAVY
Sbjct: 1  MASI-NIIWIIFKLLFFTLLLITTSTAFQPQLHEPRFRKKMRMEYRSVRKGALGAKPAVY 60

Query: 61 DFPWKGGYNPPHNNR 76
          DFPWKGGYNPP NNR
Sbjct: 61 DFPWKGGYNPPDNNR 74

[Close]

BLAST of CsaV3_4G010510.1 vs. ExPASy TrEMBL
Match: A0A6J1CHY3 (uncharacterized protein LOC111011803 OS=Momordica charantia OX=3673 GN=LOC111011803 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.1e-10
Identity = 42/75 (56.00%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 1   MASINNIILIIFKLLFFTLLLITTS-SAFQPQLHEPHFRKKMRMEYRSVRKAALGGKPAV 60
           MAS+   I  + KL FF LLLI +  SA  P +H+    +K+ MEYRSV KA L  K A 
Sbjct: 42  MASLR--ISFVLKLFFFALLLIASRVSASTPSIHKRPRIRKLGMEYRSVGKAVLRAKAAS 101

Query: 61  YDFPWKGGYNPPHNN 75
           YDFPWKGGYNPP+NN
Sbjct: 102 YDFPWKGGYNPPNNN 114

The following BLAST results are available for this feature:

BLAST of CsaV3_4G010510.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53822.1	6.5e-34	100.00	hypothetical protein Csa_015192 [Cucumis sativus]	[more]
TYK18975.1	1.5e-27	90.67	hypothetical protein E5676_scaffold418G00680 [Cucumis melo var. makuwa]	[more]
XP_022141390.1	8.5e-10	56.00	uncharacterized protein LOC111011803 [Momordica charantia]	[more]
KAG6602002.1	4.7e-08	56.45	hypothetical protein SDJN03_07235, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsaV3_4G010510.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G010510.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZM0	3.1e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G152270 PE=4 SV=1	[more]
A0A5D3D619	7.5e-28	90.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1CHY3	4.1e-10	56.00	uncharacterized protein LOC111011803 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of CsaV3_4G010510.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_4G010510	CsaV3_4G010510	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G010510.1.exon1	CsaV3_4G010510.1.exon1	exon
CsaV3_4G010510.1.exon2	CsaV3_4G010510.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G010510.1.cds1	CsaV3_4G010510.1.cds1	CDS
CsaV3_4G010510.1.cds2	CsaV3_4G010510.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_4G010510.1	CsaV3_4G010510.1-protein	polypeptide