CsaV3_3G047390.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G047390.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat-containing protein
Location	chr3: 38695638 .. 38698202 (+)
Sequence length	963
RNA-Seq Expression	CsaV3_3G047390.1
Synteny	CsaV3_3G047390.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTGCACATTCTAAGCATTGCATCAGGAACTCTGGCGACTGTCAGGTAAAAGCTCGAACGGCCATTACACATTCTAAGCATTGCATCAGGAACTCGGGAGCAAACAATGGCGTCCACCGGGAAAAGGGTTTTGGCATTGGCCAGAAATGTTTCCCTCAGTGTTCCACTTCAGTCACAGCAACCTCATTATCCACTTATTTTCCGGGGATTCTTCTCCACTGATCCTTCAATTTCCATTACGAATCCTCTGCTTCTCAAATTGCTTCAGGAGCCAACTTCGTCTGTCAAATCCGTGCTCGATTCCCAGGAAAATGGTTTTCTCTGTAGCTCCCGTCTTTCATTGAATGCCCTCGTTACGTCTCTTATATCTTCTTCAATGCTCAAGAAGGCTCAGCTGGTAACTCTCCCTATTCTCTCTTTTTTCTCCATTGTTGTCTGTTTTGTTGATTGTTGAATGAATTTAGGGTAAGAAAAGCTATGGATTCTGTGTGTTAGTTGGTGGTATCTAAATTGGAGGGATTATGTAACTTTTTTTTCCTTCAAAAAAATTCATCATCAATGTGAAGGGACTTATACAAACTCTGGAATGGAATTGGAATCAGTAAATGAAAGCAATAAATAAAGAATAAAGATAAAAAGCATTTCGTCTAAGACGTTAAACTTGTGAAGAGAATTAAATCAATGACTTAGAAGGAGAACACCCTAGCGGAAGCAAAGCTATTGGAGCTTGATATGAAAGATCCTTTGATTTCTTTTACACTATCACTCAGAGTGAAATGCTTTAACGAGAATAGAGAAAGATCATTAAAGATGGATTTTGGAGCCAAAGATGGAATGATAAGCAATTAAAAGCACATAAATATTGGATAGAGAACTCCTAGAAGAAAGCCTTCAGACTTGCAGATTCAAAGAGCTCAAGGTAAGGAAAAGATTTGAAGAGATTATGTAACTTGAACTTGCATAATTTCTTAATGATTCTTTAACCATTTAAGAATCACTATCAGTGAGGATTGATAGTGATTCTAAAATGGTTAAAAGTACTTTCTTCATCTTCTAAATCATTCCTAAGACAGTGTAAAATCAAACATTAAATTGAATTTAAATGACTGAAGGCATGTGTTTGAGTGATTTTGAACATATAACAATGTTAGACAGACTGATTTTGCTTCCAAACATACCCTTGCTATCAACTGAATAATGTTCTGTAGGAACTGGTTTCATGTTTTCAACTGTCTTTTTCTTCCAATGGCTTCAGTGATTGGCAAGTTTATCTTTGAGCTATCATGGTATCTCGTGATTAACCTTTTTCTGGGGCTTTATCAGGTTTTGGAATGGAAATTGGAGAATATGAGCAAAAAAAATGAGAGAGATCTTGATTTCTACATCAACCTGATATGTCTATGCGGAAAGCTTAGAAATTCCTCTCTTGCAATGCGTGTCTTCAATGTTATGGAATTTCAAGGAGTTAAACCCACGGTGACTGCTTTCAATTCACTTATAGAGGCTTGTATATCTTCCAATAATATGATAACTGCCTTTAGCATATTTGAAGTAATGAAAAACTCCAAAAATTTTAAACCCAACACTGACACTTTCTATTATTTCATTTCTGCATTCGCCAAATTGCACGATGTCAACTCTATGCAAGCATGGTATTCAGCCAAAAAAGCATTTGAATTCTCTCCCGACCTTCGAACCTACGAAGCTCTTATACATGGTAGTGTGAAATCGAACTGCTTTGATTTTGGTGTCAAATGTTTTGAGGAAATGATCTTATCTGACATTGTACCCAACACAATCATATTGGAGAATATGCTTGAGGGGCTCTGTAAAAGGAAAAATTTTGATGAAGTGAAGAAGTTCCTAAATGTTGTGCTTGACAATGGATGGGAGATCGATTGGAATGTGGTTGAGAAATTCATTCCAGTATGGTTTGAATCTGGGGAGTTGGAAGGGATGAAGGAGATCCTTACTAAGCTAAATAAGTGGAATTAGGCTTTCGATGACAATGTATAGTCAGTCATAAGTAGAATGATAACAATGTATATCCCATGTCCAATACAATATTCTGCTTTGTCTTAGGGAGTTGGAAACCCTGGATTGCTTGTTTTTGCATTATGAGTTTGCTTTTCTAAAGGGTAGTGTATTCATTTTAGTACTTTTGAGGTGGCTACCCTCTATAAGAAAATTTATGAATGGTGATAAACGGTCTTGACGGTCGAAGTTCATGTGAAAGAGGCAAAATCCTTTGGAGATGTGCGACTCATGCGCTTTTGTGGTCATTTTTTGGAAAATAGAGGAATACCAAGACCTTGGAAGATAAATTTGCTTTGTTGATCCTTTTGGGCTTTTGTTCACCATATAACTTCTCGATGGTGTACAAATTACATTTATGTTGTTTGAAAGTTAGTCGACGTAGTTGTAATTAAATTTTATTGATAGATCAATCATTATAGACTATAATCGCAAATGTAATTTAATGAAGTTTGATTCCGATTACTAAAAATTATGAATTTTATCAAATTTACTATTAATGTTATGGTTTGAGTTAATCCAAATTGCAA

mRNA sequence

ATGGCGTCCACCGGGAAAAGGGTTTTGGCATTGGCCAGAAATGTTTCCCTCAGTGTTCCACTTCAGTCACAGCAACCTCATTATCCACTTATTTTCCGGGGATTCTTCTCCACTGATCCTTCAATTTCCATTACGAATCCTCTGCTTCTCAAATTGCTTCAGGAGCCAACTTCGTCTGTCAAATCCGTGCTCGATTCCCAGGAAAATGGTTTTCTCTGTAGCTCCCGTCTTTCATTGAATGCCCTCGTTACGTCTCTTATATCTTCTTCAATGCTCAAGAAGGCTCAGCTGGTTTTGGAATGGAAATTGGAGAATATGAGCAAAAAAAATGAGAGAGATCTTGATTTCTACATCAACCTGATATGTCTATGCGGAAAGCTTAGAAATTCCTCTCTTGCAATGCGTGTCTTCAATGTTATGGAATTTCAAGGAGTTAAACCCACGGTGACTGCTTTCAATTCACTTATAGAGGCTTGTATATCTTCCAATAATATGATAACTGCCTTTAGCATATTTGAAGTAATGAAAAACTCCAAAAATTTTAAACCCAACACTGACACTTTCTATTATTTCATTTCTGCATTCGCCAAATTGCACGATGTCAACTCTATGCAAGCATGGTATTCAGCCAAAAAAGCATTTGAATTCTCTCCCGACCTTCGAACCTACGAAGCTCTTATACATGGTAGTGTGAAATCGAACTGCTTTGATTTTGGTGTCAAATGTTTTGAGGAAATGATCTTATCTGACATTGTACCCAACACAATCATATTGGAGAATATGCTTGAGGGGCTCTGTAAAAGGAAAAATTTTGATGAAGTGAAGAAGTTCCTAAATGTTGTGCTTGACAATGGATGGGAGATCGATTGGAATGTGGTTGAGAAATTCATTCCAGTATGGTTTGAATCTGGGGAGTTGGAAGGGATGAAGGAGATCCTTACTAAGCTAAATAAGTGGAATTAG

Coding sequence (CDS)

ATGGCGTCCACCGGGAAAAGGGTTTTGGCATTGGCCAGAAATGTTTCCCTCAGTGTTCCACTTCAGTCACAGCAACCTCATTATCCACTTATTTTCCGGGGATTCTTCTCCACTGATCCTTCAATTTCCATTACGAATCCTCTGCTTCTCAAATTGCTTCAGGAGCCAACTTCGTCTGTCAAATCCGTGCTCGATTCCCAGGAAAATGGTTTTCTCTGTAGCTCCCGTCTTTCATTGAATGCCCTCGTTACGTCTCTTATATCTTCTTCAATGCTCAAGAAGGCTCAGCTGGTTTTGGAATGGAAATTGGAGAATATGAGCAAAAAAAATGAGAGAGATCTTGATTTCTACATCAACCTGATATGTCTATGCGGAAAGCTTAGAAATTCCTCTCTTGCAATGCGTGTCTTCAATGTTATGGAATTTCAAGGAGTTAAACCCACGGTGACTGCTTTCAATTCACTTATAGAGGCTTGTATATCTTCCAATAATATGATAACTGCCTTTAGCATATTTGAAGTAATGAAAAACTCCAAAAATTTTAAACCCAACACTGACACTTTCTATTATTTCATTTCTGCATTCGCCAAATTGCACGATGTCAACTCTATGCAAGCATGGTATTCAGCCAAAAAAGCATTTGAATTCTCTCCCGACCTTCGAACCTACGAAGCTCTTATACATGGTAGTGTGAAATCGAACTGCTTTGATTTTGGTGTCAAATGTTTTGAGGAAATGATCTTATCTGACATTGTACCCAACACAATCATATTGGAGAATATGCTTGAGGGGCTCTGTAAAAGGAAAAATTTTGATGAAGTGAAGAAGTTCCTAAATGTTGTGCTTGACAATGGATGGGAGATCGATTGGAATGTGGTTGAGAAATTCATTCCAGTATGGTTTGAATCTGGGGAGTTGGAAGGGATGAAGGAGATCCTTACTAAGCTAAATAAGTGGAATTAG

Protein sequence

MASTGKRVLALARNVSLSVPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSVKSVLDSQENGFLCSSRLSLNALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINLICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKNFKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGVKCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVWFESGELEGMKEILTKLNKWN*

Homology

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BLAST of CsaV3_3G047390.1 vs. NCBI nr
Match: XP_004136433.1 (pentatricopeptide repeat-containing protein At1g12775, mitochondrial [Cucumis sativus] >KGN60201.1 hypothetical protein Csa_002233 [Cucumis sativus])

HSP 1 Score: 634.8 bits (1636), Expect = 4.0e-178
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0


Query: 1   MASTGKRVLALARNVSLSVPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60
           MASTGKRVLALARNVSLSVPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV
Sbjct: 1   MASTGKRVLALARNVSLSVPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60

Query: 61  KSVLDSQENGFLCSSRLSLNALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINL 120
           KSVLDSQENGFLCSSRLSLNALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINL
Sbjct: 61  KSVLDSQENGFLCSSRLSLNALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINL 120

Query: 121 ICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKN 180
           ICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKN
Sbjct: 121 ICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKN 180

Query: 181 FKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGV 240
           FKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGV
Sbjct: 181 FKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGV 240

Query: 241 KCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVW 300
           KCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVW
Sbjct: 241 KCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVW 300

Query: 301 FESGELEGMKEILTKLNKWN 321
           FESGELEGMKEILTKLNKWN
Sbjct: 301 FESGELEGMKEILTKLNKWN 320

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BLAST of CsaV3_3G047390.1 vs. NCBI nr
Match: XP_008466249.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g09060-like [Cucumis melo] >KAA0038720.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK31332.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 576.6 bits (1485), Expect = 1.3e-160
Identity = 293/320 (91.56%), Postives = 301/320 (94.06%), Query Frame = 0


Query: 1   MASTGKRVLALARNVSLSVPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60
           MASTGKRVL LARNVS S+PLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV
Sbjct: 1   MASTGKRVLTLARNVSFSIPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60

Query: 61  KSVLDSQENGFLCSSRLSLNALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINL 120
           KSVLDSQENGFLCSSRLSLN LVTSLISSS  KKAQLVLEWKLE MSK+NE D D YINL
Sbjct: 61  KSVLDSQENGFLCSSRLSLNDLVTSLISSSKPKKAQLVLEWKLEKMSKRNESDPDLYINL 120

Query: 121 ICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKN 180
           I LCGKLR+S LAMRVF VMEFQGVKPTVTAFNSLIEACISS+NMITAF IFEVMKNSKN
Sbjct: 121 IRLCGKLRDSFLAMRVFTVMEFQGVKPTVTAFNSLIEACISSHNMITAFGIFEVMKNSKN 180

Query: 181 FKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGV 240
           FKPNTDTFYYFIS F+KL DVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKS CFDF V
Sbjct: 181 FKPNTDTFYYFISEFSKLRDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSKCFDFAV 240

Query: 241 KCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVW 300
           KCFEEM+LSDIVPN IILENMLEGLCKRKNFDEVKKFLNVVLDNGWEI+WNVVEKFIPVW
Sbjct: 241 KCFEEMMLSDIVPNAIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEINWNVVEKFIPVW 300

Query: 301 FESGELEGMKEILTKLNKWN 321
           FESGELEGMKEILTK+NK N
Sbjct: 301 FESGELEGMKEILTKINKSN 320

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BLAST of CsaV3_3G047390.1 vs. NCBI nr
Match: XP_038897030.1 (pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 519.6 bits (1337), Expect = 1.9e-143
Identity = 265/320 (82.81%), Postives = 285/320 (89.06%), Query Frame = 0


Query: 1   MASTGKRVLALARNVSLSVPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60
           MA TGKRVLALA + S  +PLQ QQ H+PL FR F STDPS  I+NPLLL+LLQEPTSSV
Sbjct: 1   MALTGKRVLALAGSGSSRIPLQLQQAHFPLCFRRFVSTDPSNPISNPLLLRLLQEPTSSV 60

Query: 61  KSVLDSQENGFLCSSRLSLNALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINL 120
           KSVLDSQEN FLCSSRLS N LVTSLISSS  KKAQLVLEWKLE MSK+NERD DFYI+L
Sbjct: 61  KSVLDSQENAFLCSSRLSFNTLVTSLISSSSPKKAQLVLEWKLEKMSKENERDPDFYIDL 120

Query: 121 ICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKN 180
           + LCG+L+NS LAM VF VMEFQGVKPTVTAFNSLIEACISS NMITAFSIFEVMKNS++
Sbjct: 121 MRLCGELQNSPLAMCVFTVMEFQGVKPTVTAFNSLIEACISSRNMITAFSIFEVMKNSES 180

Query: 181 FKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGV 240
           +KPN+DTFY+FI  FAKLHDVNSMQAWYSAKKAF FSPDLRTYEALIHGSVKS CFDF V
Sbjct: 181 YKPNSDTFYHFIFVFAKLHDVNSMQAWYSAKKAFGFSPDLRTYEALIHGSVKSKCFDFAV 240

Query: 241 KCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVW 300
           KCFEEM+LS IVPNTIILENMLEGLCKRKN DEVKKFLNVVLD GWEI+WNVV KF P+W
Sbjct: 241 KCFEEMMLSGIVPNTIILENMLEGLCKRKNLDEVKKFLNVVLDKGWEINWNVVAKFFPIW 300

Query: 301 FESGELEGMKEILTKLNKWN 321
           FESGELEGM+EILTK+NK N
Sbjct: 301 FESGELEGMEEILTKINKSN 320

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BLAST of CsaV3_3G047390.1 vs. NCBI nr
Match: KAG7024539.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 478.4 bits (1230), Expect = 4.8e-131
Identity = 243/318 (76.42%), Postives = 273/318 (85.85%), Query Frame = 0


Query: 1   MASTGKRVLALARNVSLSVPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60
           MA    RVLALA+  S  VPL+ Q+PHY  I R F STDPS SI NPL+L+L+QEP+SSV
Sbjct: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 61  KSVLDSQENGFLCSSRLSLNALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINL 120
           KSVLDS EN FL SSRLS  ALVTSLISSS  KKAQL LEW+LE MSK+NERD DFYI+L
Sbjct: 61  KSVLDSPENAFLGSSRLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120

Query: 121 ICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKN 180
           I LCG+L+N  LAMRVF  MEFQGVKPTVTAFNSLIE CISS+NMITAFS+FE+MKNS++
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVKPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 181 FKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGV 240
            KPN DTF+YFISAFAK HDVNSM+AWYSAK+AFEFS DLRTYEALIHGSVKS CFDF V
Sbjct: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVKSKCFDFAV 240

Query: 241 KCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVW 300
           +CF+EM+LS IVPN IIL+NMLEG CKRK+ DE+KKFL VVLD GWEI+WNVVEKFIP+W
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300

Query: 301 FESGELEGMKEILTKLNK 319
           FESGE EGM+EILTKLN+
Sbjct: 301 FESGEAEGMEEILTKLNE 318

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BLAST of CsaV3_3G047390.1 vs. NCBI nr
Match: XP_022975914.1 (pentatricopeptide repeat-containing protein At2g37230-like isoform X1 [Cucurbita maxima] >XP_022975915.1 pentatricopeptide repeat-containing protein At2g37230-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 473.0 bits (1216), Expect = 2.0e-129
Identity = 240/318 (75.47%), Postives = 271/318 (85.22%), Query Frame = 0


Query: 1   MASTGKRVLALARNVSLSVPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60
           MA    RVLALA+  S  +PL+ Q+ HY  I R F STDPS SI NPL+L+L+QEP+SSV
Sbjct: 1   MAVARNRVLALAKGGSSRIPLRLQEAHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 61  KSVLDSQENGFLCSSRLSLNALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINL 120
           KSVLDS EN FL SSRLS  ALVTSLISSS  KKAQL LEW+LE M+K+NERD DFYI+L
Sbjct: 61  KSVLDSPENDFLGSSRLSWKALVTSLISSSSPKKAQLALEWRLEKMNKENERDPDFYIDL 120

Query: 121 ICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKN 180
           I LCG+L+N  LAMRVF  MEFQGVKPTVTAFNSLIE CISS+NMITAFS+FE+MKNS++
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVKPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 181 FKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGV 240
           FKPN DTF+YFISAFAKL DVNSM+AWYSAK+AFEFS DLRTYEALIHGSV S CFDF V
Sbjct: 181 FKPNADTFFYFISAFAKLRDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVNSKCFDFAV 240

Query: 241 KCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVW 300
           +CF+EM+LS IVPN IIL+NMLEG CKRK+ DE+KKFL VVLD GWEI WNVVEKFIP+W
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEIKWNVVEKFIPIW 300

Query: 301 FESGELEGMKEILTKLNK 319
           FESGE EGM+EILTKLN+
Sbjct: 301 FESGEAEGMEEILTKLNE 318

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BLAST of CsaV3_3G047390.1 vs. ExPASy Swiss-Prot
Match: Q9LQ14 (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g62930 PE=2 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 3.8e-14
Identity = 57/215 (26.51%), Postives = 92/215 (42.79%), Query Frame = 0


Query: 103 LENMSK-KNERDLDFYINLICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACIS 162
           L+ M K K E D+  Y  +I      +N + A+ +F  M+ +G++P V  +NSLI    +
Sbjct: 243 LKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCN 302

Query: 163 SNNMITAFSIFEVMKNSKNFKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLR 222
                 A  +   M   K   PN  TF   I AF K   +   +  Y         PD+ 
Sbjct: 303 YGRWSDASRLLSDMIERK-INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 362

Query: 223 TYEALIHGSVKSNCFDFGVKCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVV 282
           TY +LI+G    +  D     FE MI  D  PN +    +++G CK K  +E  +    +
Sbjct: 363 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 422

Query: 283 LDNGWEIDWNVVEKFIPVWFESGELEGMKEILTKL 317
              G   +       I   F++G+ +  ++I  K+
Sbjct: 423 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 456

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BLAST of CsaV3_3G047390.1 vs. ExPASy Swiss-Prot
Match: Q9M302 (Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX=3702 GN=At3g48810 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.6e-14
Identity = 52/239 (21.76%), Postives = 99/239 (41.42%), Query Frame = 0


Query: 80  NALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINLICLCGKLRNSSLAMRVFNV 139
           NAL+  L      K A  ++   +E     N       IN++C  G++    LA      
Sbjct: 250 NALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQI---ELAFSFLTQ 309

Query: 140 MEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKNFKPNTDTFYYFISAFAKLH 199
           M  +G  P +   +SL++ C        A  ++  M      +PN   +   +  F    
Sbjct: 310 MLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHG 369

Query: 200 DVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGVKCFEEMILSDIVPNTIILE 259
           ++    + +S  +    SP++RTY +LI+G  K    D  V  + +M+ S   PN ++  
Sbjct: 370 NIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYT 429

Query: 260 NMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVWFESGELEGMKEILTKLNK 319
           NM+E LC+   F E +  + ++              FI    ++G L+  +++  ++ +
Sbjct: 430 NMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQ 485

[Close]

BLAST of CsaV3_3G047390.1 vs. ExPASy Swiss-Prot
Match: Q9SH26 (Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana OX=3702 GN=At1g63400 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.5e-13
Identity = 55/196 (28.06%), Postives = 85/196 (43.37%), Query Frame = 0


Query: 80  NALVTSLISSSMLKKAQLVLEWKLENM--SKKNERDLDFYINLICLCGKLRNSSLAMRVF 139
           N +   ++ + + K+  + L + L N   + K E ++  Y  +I    K R+   A+ +F
Sbjct: 224 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLF 283

Query: 140 NVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKNFKPNTDTFYYFISAFAK 199
             ME +GV+P V  ++SLI    +      A  +   M   K   PN  TF   I AF K
Sbjct: 284 TEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERK-INPNVVTFNALIDAFVK 343

Query: 200 LHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGVKCFEEMILSDIVPNTII 259
              +   +  Y         PD+ TY +LI+G    +  D     FE MI  D  PN + 
Sbjct: 344 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 403

Query: 260 LENMLEGLCKRKNFDE 274
              ++ G CK K  DE
Sbjct: 404 YNTLINGFCKAKRIDE 418

[Close]

BLAST of CsaV3_3G047390.1 vs. ExPASy Swiss-Prot
Match: Q9SXD8 (Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana OX=3702 GN=At1g62590 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.1e-12
Identity = 55/239 (23.01%), Postives = 98/239 (41.00%), Query Frame = 0


Query: 80  NALVTSLISSSMLKKAQLVLEWKLENM--SKKNERDLDFYINLICLCGKLRNSSLAMRVF 139
           N +   ++ + + K+    L   L N   + K E D+  +  +I    K R+   A+ +F
Sbjct: 224 NLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 283

Query: 140 NVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKNFKPNTDTFYYFISAFAK 199
             ME +G++P V  ++SLI    S      A  +   M   K   PN  TF   I AF K
Sbjct: 284 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM-IEKKINPNLVTFNALIDAFVK 343

Query: 200 LHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGVKCFEEMILSDIVPNTII 259
                  +  Y         PD+ TY +L++G    +  D   + FE M+  D  P+ + 
Sbjct: 344 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVT 403

Query: 260 LENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVWFESGELEGMKEILTKL 317
              +++G CK K  ++  +    +   G   D       I   F  G+ +  +++  ++
Sbjct: 404 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 461

[Close]

BLAST of CsaV3_3G047390.1 vs. ExPASy Swiss-Prot
Match: Q9C8T7 (Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana OX=3702 GN=At1g63330 PE=2 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 2.3e-11
Identity = 55/239 (23.01%), Postives = 99/239 (41.42%), Query Frame = 0


Query: 80  NALVTSLISSSMLKKAQLVLEWKLENM--SKKNERDLDFYINLICLCGKLRNSSLAMRVF 139
           N +   ++ + + K+  + L + L N   + K E D+  +  +I    K R+   A+ +F
Sbjct: 149 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 208

Query: 140 NVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKNFKPNTDTFYYFISAFAK 199
             ME +G++P V  ++SLI    S      A  +   M   K   PN  TF   I AF K
Sbjct: 209 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM-IEKKINPNLVTFNALIDAFVK 268

Query: 200 LHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGVKCFEEMILSDIVPNTII 259
                  +  +         PD+ TY +LI+G    +  D   + FE M+  D  P+   
Sbjct: 269 EGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDT 328

Query: 260 LENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVWFESGELEGMKEILTKL 317
              +++G CK K  ++  +    +   G   D       I   F  G+ +  +++  ++
Sbjct: 329 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 386

[Close]

BLAST of CsaV3_3G047390.1 vs. ExPASy TrEMBL
Match: A0A0A0LJI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889090 PE=4 SV=1)

HSP 1 Score: 634.8 bits (1636), Expect = 2.0e-178
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 0


Query: 1   MASTGKRVLALARNVSLSVPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60
           MASTGKRVLALARNVSLSVPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV
Sbjct: 1   MASTGKRVLALARNVSLSVPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60

Query: 61  KSVLDSQENGFLCSSRLSLNALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINL 120
           KSVLDSQENGFLCSSRLSLNALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINL
Sbjct: 61  KSVLDSQENGFLCSSRLSLNALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINL 120

Query: 121 ICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKN 180
           ICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKN
Sbjct: 121 ICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKN 180

Query: 181 FKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGV 240
           FKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGV
Sbjct: 181 FKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGV 240

Query: 241 KCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVW 300
           KCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVW
Sbjct: 241 KCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVW 300

Query: 301 FESGELEGMKEILTKLNKWN 321
           FESGELEGMKEILTKLNKWN
Sbjct: 301 FESGELEGMKEILTKLNKWN 320

[Close]

BLAST of CsaV3_3G047390.1 vs. ExPASy TrEMBL
Match: A0A5D3E5Z9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G006320 PE=3 SV=1)

HSP 1 Score: 576.6 bits (1485), Expect = 6.3e-161
Identity = 293/320 (91.56%), Postives = 301/320 (94.06%), Query Frame = 0


Query: 1   MASTGKRVLALARNVSLSVPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60
           MASTGKRVL LARNVS S+PLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV
Sbjct: 1   MASTGKRVLTLARNVSFSIPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60

Query: 61  KSVLDSQENGFLCSSRLSLNALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINL 120
           KSVLDSQENGFLCSSRLSLN LVTSLISSS  KKAQLVLEWKLE MSK+NE D D YINL
Sbjct: 61  KSVLDSQENGFLCSSRLSLNDLVTSLISSSKPKKAQLVLEWKLEKMSKRNESDPDLYINL 120

Query: 121 ICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKN 180
           I LCGKLR+S LAMRVF VMEFQGVKPTVTAFNSLIEACISS+NMITAF IFEVMKNSKN
Sbjct: 121 IRLCGKLRDSFLAMRVFTVMEFQGVKPTVTAFNSLIEACISSHNMITAFGIFEVMKNSKN 180

Query: 181 FKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGV 240
           FKPNTDTFYYFIS F+KL DVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKS CFDF V
Sbjct: 181 FKPNTDTFYYFISEFSKLRDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSKCFDFAV 240

Query: 241 KCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVW 300
           KCFEEM+LSDIVPN IILENMLEGLCKRKNFDEVKKFLNVVLDNGWEI+WNVVEKFIPVW
Sbjct: 241 KCFEEMMLSDIVPNAIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEINWNVVEKFIPVW 300

Query: 301 FESGELEGMKEILTKLNKWN 321
           FESGELEGMKEILTK+NK N
Sbjct: 301 FESGELEGMKEILTKINKSN 320

[Close]

BLAST of CsaV3_3G047390.1 vs. ExPASy TrEMBL
Match: A0A1S3CS56 (pentatricopeptide repeat-containing protein At3g09060-like OS=Cucumis melo OX=3656 GN=LOC103503719 PE=3 SV=1)

HSP 1 Score: 576.6 bits (1485), Expect = 6.3e-161
Identity = 293/320 (91.56%), Postives = 301/320 (94.06%), Query Frame = 0


Query: 1   MASTGKRVLALARNVSLSVPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60
           MASTGKRVL LARNVS S+PLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV
Sbjct: 1   MASTGKRVLTLARNVSFSIPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60

Query: 61  KSVLDSQENGFLCSSRLSLNALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINL 120
           KSVLDSQENGFLCSSRLSLN LVTSLISSS  KKAQLVLEWKLE MSK+NE D D YINL
Sbjct: 61  KSVLDSQENGFLCSSRLSLNDLVTSLISSSKPKKAQLVLEWKLEKMSKRNESDPDLYINL 120

Query: 121 ICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKN 180
           I LCGKLR+S LAMRVF VMEFQGVKPTVTAFNSLIEACISS+NMITAF IFEVMKNSKN
Sbjct: 121 IRLCGKLRDSFLAMRVFTVMEFQGVKPTVTAFNSLIEACISSHNMITAFGIFEVMKNSKN 180

Query: 181 FKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGV 240
           FKPNTDTFYYFIS F+KL DVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKS CFDF V
Sbjct: 181 FKPNTDTFYYFISEFSKLRDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSKCFDFAV 240

Query: 241 KCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVW 300
           KCFEEM+LSDIVPN IILENMLEGLCKRKNFDEVKKFLNVVLDNGWEI+WNVVEKFIPVW
Sbjct: 241 KCFEEMMLSDIVPNAIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEINWNVVEKFIPVW 300

Query: 301 FESGELEGMKEILTKLNKWN 321
           FESGELEGMKEILTK+NK N
Sbjct: 301 FESGELEGMKEILTKINKSN 320

[Close]

BLAST of CsaV3_3G047390.1 vs. ExPASy TrEMBL
Match: A0A6J1II25 (pentatricopeptide repeat-containing protein At2g37230-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111476476 PE=4 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 9.8e-130
Identity = 240/318 (75.47%), Postives = 271/318 (85.22%), Query Frame = 0


Query: 1   MASTGKRVLALARNVSLSVPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60
           MA    RVLALA+  S  +PL+ Q+ HY  I R F STDPS SI NPL+L+L+QEP+SSV
Sbjct: 1   MAVARNRVLALAKGGSSRIPLRLQEAHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 61  KSVLDSQENGFLCSSRLSLNALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINL 120
           KSVLDS EN FL SSRLS  ALVTSLISSS  KKAQL LEW+LE M+K+NERD DFYI+L
Sbjct: 61  KSVLDSPENDFLGSSRLSWKALVTSLISSSSPKKAQLALEWRLEKMNKENERDPDFYIDL 120

Query: 121 ICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKN 180
           I LCG+L+N  LAMRVF  MEFQGVKPTVTAFNSLIE CISS+NMITAFS+FE+MKNS++
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVKPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 181 FKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGV 240
           FKPN DTF+YFISAFAKL DVNSM+AWYSAK+AFEFS DLRTYEALIHGSV S CFDF V
Sbjct: 181 FKPNADTFFYFISAFAKLRDVNSMEAWYSAKRAFEFSADLRTYEALIHGSVNSKCFDFAV 240

Query: 241 KCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVW 300
           +CF+EM+LS IVPN IIL+NMLEG CKRK+ DE+KKFL VVLD GWEI WNVVEKFIP+W
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEIKWNVVEKFIPIW 300

Query: 301 FESGELEGMKEILTKLNK 319
           FESGE EGM+EILTKLN+
Sbjct: 301 FESGEAEGMEEILTKLNE 318

[Close]

BLAST of CsaV3_3G047390.1 vs. ExPASy TrEMBL
Match: A0A6J1FC94 (pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111442788 PE=4 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 8.1e-124
Identity = 231/313 (73.80%), Postives = 262/313 (83.71%), Query Frame = 0


Query: 1   MASTGKRVLALARNVSLSVPLQSQQPHYPLIFRGFFSTDPSISITNPLLLKLLQEPTSSV 60
           MA    RVLALA+  S  VPL+ Q+PHY  I R F STDPS SI NPL+L+L+QEP+SSV
Sbjct: 1   MAVARNRVLALAKGGSSRVPLRLQEPHYRCICRRFVSTDPSNSILNPLVLRLIQEPSSSV 60

Query: 61  KSVLDSQENGFLCSSRLSLNALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINL 120
           KSVLDS EN FL SS LS  ALVTSLISSS  KKAQL LEW+LE MSK+NERD DFYI+L
Sbjct: 61  KSVLDSPENAFLGSSWLSWKALVTSLISSSSPKKAQLALEWRLEKMSKENERDPDFYIDL 120

Query: 121 ICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKN 180
           I LCG+L+N  LAMRVF  MEFQGV+PTVTAFNSLIE CISS+NMITAFS+FE+MKNS++
Sbjct: 121 IRLCGELQNVPLAMRVFTAMEFQGVQPTVTAFNSLIEVCISSHNMITAFSMFEIMKNSES 180

Query: 181 FKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGV 240
            KPN DTF+YFISAFAK HDVNSM+AWYSA +AFEFS DLRTYEALIHGSVKS CFDF V
Sbjct: 181 SKPNADTFFYFISAFAKRHDVNSMEAWYSANRAFEFSADLRTYEALIHGSVKSKCFDFAV 240

Query: 241 KCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVW 300
           +CF+EM+LS IVPN IIL+NMLEG CKRK+ DE+KKFL VVLD GWEI+WNVVEKFIP+W
Sbjct: 241 RCFDEMMLSGIVPNAIILDNMLEGFCKRKDLDELKKFLTVVLDKGWEINWNVVEKFIPIW 300

Query: 301 FESGELEGMKEIL 314
           FESG  +G +  L
Sbjct: 301 FESGRRKGWRRSL 313

[Close]

BLAST of CsaV3_3G047390.1 vs. TAIR 10
Match: AT1G62930.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 2.7e-15
Identity = 57/215 (26.51%), Postives = 92/215 (42.79%), Query Frame = 0


Query: 103 LENMSK-KNERDLDFYINLICLCGKLRNSSLAMRVFNVMEFQGVKPTVTAFNSLIEACIS 162
           L+ M K K E D+  Y  +I      +N + A+ +F  M+ +G++P V  +NSLI    +
Sbjct: 243 LKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCN 302

Query: 163 SNNMITAFSIFEVMKNSKNFKPNTDTFYYFISAFAKLHDVNSMQAWYSAKKAFEFSPDLR 222
                 A  +   M   K   PN  TF   I AF K   +   +  Y         PD+ 
Sbjct: 303 YGRWSDASRLLSDMIERK-INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 362

Query: 223 TYEALIHGSVKSNCFDFGVKCFEEMILSDIVPNTIILENMLEGLCKRKNFDEVKKFLNVV 282
           TY +LI+G    +  D     FE MI  D  PN +    +++G CK K  +E  +    +
Sbjct: 363 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 422

Query: 283 LDNGWEIDWNVVEKFIPVWFESGELEGMKEILTKL 317
              G   +       I   F++G+ +  ++I  K+
Sbjct: 423 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKM 456

[Close]

BLAST of CsaV3_3G047390.1 vs. TAIR 10
Match: AT3G48810.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 4.7e-15
Identity = 52/239 (21.76%), Postives = 99/239 (41.42%), Query Frame = 0


Query: 80  NALVTSLISSSMLKKAQLVLEWKLENMSKKNERDLDFYINLICLCGKLRNSSLAMRVFNV 139
           NAL+  L      K A  ++   +E     N       IN++C  G++    LA      
Sbjct: 250 NALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQI---ELAFSFLTQ 309

Query: 140 MEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKNFKPNTDTFYYFISAFAKLH 199
           M  +G  P +   +SL++ C        A  ++  M      +PN   +   +  F    
Sbjct: 310 MLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHG 369

Query: 200 DVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGVKCFEEMILSDIVPNTIILE 259
           ++    + +S  +    SP++RTY +LI+G  K    D  V  + +M+ S   PN ++  
Sbjct: 370 NIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYT 429

Query: 260 NMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVWFESGELEGMKEILTKLNK 319
           NM+E LC+   F E +  + ++              FI    ++G L+  +++  ++ +
Sbjct: 430 NMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQ 485

[Close]

BLAST of CsaV3_3G047390.1 vs. TAIR 10
Match: AT1G63400.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 75.9 bits (185), Expect = 6.7e-14
Identity = 55/196 (28.06%), Postives = 85/196 (43.37%), Query Frame = 0


Query: 80  NALVTSLISSSMLKKAQLVLEWKLENM--SKKNERDLDFYINLICLCGKLRNSSLAMRVF 139
           N +   ++ + + K+  + L + L N   + K E ++  Y  +I    K R+   A+ +F
Sbjct: 224 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLF 283

Query: 140 NVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKNFKPNTDTFYYFISAFAK 199
             ME +GV+P V  ++SLI    +      A  +   M   K   PN  TF   I AF K
Sbjct: 284 TEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERK-INPNVVTFNALIDAFVK 343

Query: 200 LHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGVKCFEEMILSDIVPNTII 259
              +   +  Y         PD+ TY +LI+G    +  D     FE MI  D  PN + 
Sbjct: 344 EGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVT 403

Query: 260 LENMLEGLCKRKNFDE 274
              ++ G CK K  DE
Sbjct: 404 YNTLINGFCKAKRIDE 418

[Close]

BLAST of CsaV3_3G047390.1 vs. TAIR 10
Match: AT1G62590.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 73.2 bits (178), Expect = 4.4e-13
Identity = 55/239 (23.01%), Postives = 98/239 (41.00%), Query Frame = 0


Query: 80  NALVTSLISSSMLKKAQLVLEWKLENM--SKKNERDLDFYINLICLCGKLRNSSLAMRVF 139
           N +   ++ + + K+    L   L N   + K E D+  +  +I    K R+   A+ +F
Sbjct: 224 NLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 283

Query: 140 NVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKNFKPNTDTFYYFISAFAK 199
             ME +G++P V  ++SLI    S      A  +   M   K   PN  TF   I AF K
Sbjct: 284 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM-IEKKINPNLVTFNALIDAFVK 343

Query: 200 LHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGVKCFEEMILSDIVPNTII 259
                  +  Y         PD+ TY +L++G    +  D   + FE M+  D  P+ + 
Sbjct: 344 EGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVT 403

Query: 260 LENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVWFESGELEGMKEILTKL 317
              +++G CK K  ++  +    +   G   D       I   F  G+ +  +++  ++
Sbjct: 404 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 461

[Close]

BLAST of CsaV3_3G047390.1 vs. TAIR 10
Match: AT1G63330.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-12
Identity = 55/239 (23.01%), Postives = 99/239 (41.42%), Query Frame = 0


Query: 80  NALVTSLISSSMLKKAQLVLEWKLENM--SKKNERDLDFYINLICLCGKLRNSSLAMRVF 139
           N +   ++ + + K+  + L + L N   + K E D+  +  +I    K R+   A+ +F
Sbjct: 149 NLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLF 208

Query: 140 NVMEFQGVKPTVTAFNSLIEACISSNNMITAFSIFEVMKNSKNFKPNTDTFYYFISAFAK 199
             ME +G++P V  ++SLI    S      A  +   M   K   PN  TF   I AF K
Sbjct: 209 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDM-IEKKINPNLVTFNALIDAFVK 268

Query: 200 LHDVNSMQAWYSAKKAFEFSPDLRTYEALIHGSVKSNCFDFGVKCFEEMILSDIVPNTII 259
                  +  +         PD+ TY +LI+G    +  D   + FE M+  D  P+   
Sbjct: 269 EGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDT 328

Query: 260 LENMLEGLCKRKNFDEVKKFLNVVLDNGWEIDWNVVEKFIPVWFESGELEGMKEILTKL 317
              +++G CK K  ++  +    +   G   D       I   F  G+ +  +++  ++
Sbjct: 329 YNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQM 386

The following BLAST results are available for this feature:

BLAST of CsaV3_3G047390.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136433.1	4.0e-178	100.00	pentatricopeptide repeat-containing protein At1g12775, mitochondrial [Cucumis sa...	[more]
XP_008466249.1	1.3e-160	91.56	PREDICTED: pentatricopeptide repeat-containing protein At3g09060-like [Cucumis m...	[more]
XP_038897030.1	1.9e-143	82.81	pentatricopeptide repeat-containing protein At1g12775, mitochondrial-like [Benin...	[more]
KAG7024539.1	4.8e-131	76.42	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
XP_022975914.1	2.0e-129	75.47	pentatricopeptide repeat-containing protein At2g37230-like isoform X1 [Cucurbita...	[more]

BLAST of CsaV3_3G047390.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQ14	3.8e-14	26.51	Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidop...	[more]
Q9M302	6.6e-14	21.76	Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana OX...	[more]
Q9SH26	9.5e-13	28.06	Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana OX...	[more]
Q9SXD8	6.1e-12	23.01	Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana OX...	[more]
Q9C8T7	2.3e-11	23.01	Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana OX...	[more]

BLAST of CsaV3_3G047390.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJI4	2.0e-178	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889090 PE=4 SV=1	[more]
A0A5D3E5Z9	6.3e-161	91.56	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CS56	6.3e-161	91.56	pentatricopeptide repeat-containing protein At3g09060-like OS=Cucumis melo OX=36...	[more]
A0A6J1II25	9.8e-130	75.47	pentatricopeptide repeat-containing protein At2g37230-like isoform X1 OS=Cucurbi...	[more]
A0A6J1FC94	8.1e-124	73.80	pentatricopeptide repeat-containing protein At1g63080, mitochondrial-like isofor...	[more]

BLAST of CsaV3_3G047390.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G62930.1	2.7e-15	26.51	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G48810.1	4.7e-15	21.76	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G63400.1	6.7e-14	28.06	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62590.1	4.4e-13	23.01	pentatricopeptide (PPR) repeat-containing protein	[more]
AT1G63330.1	1.7e-12	23.01	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 111..159 e-value: 2.1E-8 score: 34.1
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 222..249 e-value: 0.032 score: 14.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 222..255 e-value: 1.7E-5 score: 22.7 coord: 119..149 e-value: 8.9E-4 score: 17.3 coord: 151..185 e-value: 0.0013 score: 16.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 219..253 score: 9.382931
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 113..147 score: 8.637562
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 44..203 e-value: 4.1E-20 score: 73.9 coord: 204..316 e-value: 5.5E-14 score: 53.9
None	No IPR available	PANTHER	PTHR45613	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 34..319
None	No IPR available	PANTHER	PTHR45613:SF360	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 34..319

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_3G047390	CsaV3_3G047390	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G047390.1.exon1	CsaV3_3G047390.1.exon1	exon
CsaV3_3G047390.1.exon2	CsaV3_3G047390.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G047390.1.cds1	CsaV3_3G047390.1.cds1	CDS
CsaV3_3G047390.1.cds2	CsaV3_3G047390.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G047390.1	CsaV3_3G047390.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding