CsaV3_3G046690.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G046690.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	polyadenylate-binding protein-interacting protein 5
Location	chr3: 38083273 .. 38085261 (-)
Sequence length	588
RNA-Seq Expression	CsaV3_3G046690.1
Synteny	CsaV3_3G046690.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGATCCTTCTACTGATTAGGGTTTCTTTACTTCTCTCTTCAATTTCTCTTTTCAACATCAAGGATTTTGGTGAGTTTCTTCTTTCCAACTCCGATCCTCCTTATACCTCTTCAATTCTCTACTTTTTCTTTGGATTTTTACTGTTTTTTTCTTGTGTATTTTTGTACTGATAAGTGAAATTAATGAAGTTTTTGTTTCAAACTGATGTATATGTTCTCTTATCCAACGAACTGATTTGCTTTGGTTTGATATTTTCTCAGTTTATGAAATGTTAGGTTTAGAAGTAATGGTACTTGCGTGTTACTCTTTATGTATTTGGTCATTAAGATTTGATTTCCGCGATTGTGAAGTGATTAAATCTTTTACTTACTGAATGTTAGCTTTGGATATTTGGATTTTCTTCTTTGAATCTTGGTTTTGAAGTGGGTTTGTTGTTGTACAGGATTTGATTCTTCTGATCTTTGTTTTTCTTGGTGAAGAAAGGTAGATGTAGTTAGATATTTTATTTCTGATCATCCGAATTATGCTTCCAATTGCTAAAGAAAATTTACATTGTGTGTGGAGGGGGGATTATGTGATGCAGCTCTGTGGAGTTTTCTTGATCTGAATATTGTATGATCATGATTGACTTGAGTGCTATGAGTTTGTTCTTACATCTTCATTCTTCCTGCGTTTTATTTTTCGGGTTAAATTGTTTTGCAGGAAGGATTGGACAAGATAGCAATCATTTCTCCATCTGGTGCAATGAAGCCACATGGATCGTCTTTGAATCCGTTTGCAACATCTTACATTCCACTCTCCCAGAGAGGGGCTAACAGAACTTTTATAGGGGAAAACACTTCGAGGGAAAATATTGGGGCTAACTTGCCTGGATACTCTGAACAATGTGTATATAATCCTCCATATAACAACAGCATTTCCCCTCGGTTAAATATGAATCATGGTAAAAAAGCATCTGTCGCAGGCGCAGCTGTGAAGAATCACCCTTTTCTTGGATCATTGTCACAACAGAGTAGTGATTTGACAGAAATGGAGATGTTTGATAGAGAAGTCAACATGGATATTGAATTGCTTCAAGTCAGTTTCCCTGGACTATCTGAACAATCCCTTACTGATGTGTATTTTGCAAATAAAGGTGACTTGGATGCTGCTATAGACATGCTGAGCCAGCTTGAGGTTTTCTCTATCTCTCCCCTCGTTCTGGTTAACTGTTGTATTGAACAAACTTGGTTGACGAACATTGCTTTATGCTTGTATAATGTTCTTATAAATGTTGTGAATGCAAATATGCTTAACTAACTCATTTGTTGGTCAATTCGATATTTAGAACAAACATCCACACGACGTTGAATACGACCCTGAAAGTCTCCCAGACACTTTGGACATTGGTGATATCTCCGAATCCGGGTTTGTAACCGTTGATCAACCCTCTTTCAGAATGAAGAATGTAGCCAATCAAGCAAGTACTTCATCCAGATTCTAAGAGCATTTGTTGGTTTGGAGAAGTGAACTTTTCTTTCCCCATGTGGGTTTTCTTTGATTACTTCTTTTTTTTTTCTCACTATAAGTAAACATCATCCTTTGGGATAAGGGGATCCTCTCTGGTTATAGGATTGTATAGTGTTCCAAGTTCTTTGTACGTGCACGAACTCATTTGCAATGGTGTCGACGACGTCTCTTTGTTTCGACCGATCAAAAAGATCGATATGTTCCATTCCACAATTGTTTTGTGTTGTAGGATACATACATACTTCACAAAAACAGCTTGATATTTGAACTATTTTGGGATTCATAGAGTTCTATGTCTATTACTTCAATGGACTTTTTGAAATTGGACCACTTTGTTGTTGATACTCATTTCCTATTTTGATCAGTTTGCTTAACCATCGTTTTCCCATGAAAGAATGATCCTAAGGTATATTACTTTATAATTCTAATCCATCCAGAAATCACATGTCCATTAATTATTGAATGTAGAAAATATCTTG

mRNA sequence

ATGAAGCCACATGGATCGTCTTTGAATCCGTTTGCAACATCTTACATTCCACTCTCCCAGAGAGGGGCTAACAGAACTTTTATAGGGGAAAACACTTCGAGGGAAAATATTGGGGCTAACTTGCCTGGATACTCTGAACAATGTGTATATAATCCTCCATATAACAACAGCATTTCCCCTCGGTTAAATATGAATCATGGTAAAAAAGCATCTGTCGCAGGCGCAGCTGTGAAGAATCACCCTTTTCTTGGATCATTGTCACAACAGAGTAGTGATTTGACAGAAATGGAGATGTTTGATAGAGAAGTCAACATGGATATTGAATTGCTTCAAGTCAGTTTCCCTGGACTATCTGAACAATCCCTTACTGATGTGTATTTTGCAAATAAAGGTGACTTGGATGCTGCTATAGACATGCTGAGCCAGCTTGAGAACAAACATCCACACGACGTTGAATACGACCCTGAAAGTCTCCCAGACACTTTGGACATTGGTGATATCTCCGAATCCGGGTTTGTAACCGTTGATCAACCCTCTTTCAGAATGAAGAATGTAGCCAATCAAGCAAGTACTTCATCCAGATTCTAA

Coding sequence (CDS)

ATGAAGCCACATGGATCGTCTTTGAATCCGTTTGCAACATCTTACATTCCACTCTCCCAGAGAGGGGCTAACAGAACTTTTATAGGGGAAAACACTTCGAGGGAAAATATTGGGGCTAACTTGCCTGGATACTCTGAACAATGTGTATATAATCCTCCATATAACAACAGCATTTCCCCTCGGTTAAATATGAATCATGGTAAAAAAGCATCTGTCGCAGGCGCAGCTGTGAAGAATCACCCTTTTCTTGGATCATTGTCACAACAGAGTAGTGATTTGACAGAAATGGAGATGTTTGATAGAGAAGTCAACATGGATATTGAATTGCTTCAAGTCAGTTTCCCTGGACTATCTGAACAATCCCTTACTGATGTGTATTTTGCAAATAAAGGTGACTTGGATGCTGCTATAGACATGCTGAGCCAGCTTGAGAACAAACATCCACACGACGTTGAATACGACCCTGAAAGTCTCCCAGACACTTTGGACATTGGTGATATCTCCGAATCCGGGTTTGTAACCGTTGATCAACCCTCTTTCAGAATGAAGAATGTAGCCAATCAAGCAAGTACTTCATCCAGATTCTAA

Protein sequence

MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISPRLNMNHGKKASVAGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSEQSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQPSFRMKNVANQASTSSRF*

Homology

[Close]

BLAST of CsaV3_3G046690.1 vs. NCBI nr
Match: XP_004136335.1 (polyadenylate-binding protein-interacting protein 5 [Cucumis sativus] >KGN60127.1 hypothetical protein Csa_002673 [Cucumis sativus])

HSP 1 Score: 393.3 bits (1009), Expect = 1.2e-105
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60
           MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP
Sbjct: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60

Query: 61  RLNMNHGKKASVAGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSEQ 120
           RLNMNHGKKASVAGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSEQ
Sbjct: 61  RLNMNHGKKASVAGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSEQ 120

Query: 121 SLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQPSF 180
           SLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQPSF
Sbjct: 121 SLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQPSF 180

Query: 181 RMKNVANQASTSSRF 196
           RMKNVANQASTSSRF
Sbjct: 181 RMKNVANQASTSSRF 195

[Close]

BLAST of CsaV3_3G046690.1 vs. NCBI nr
Match: KAA0038789.1 (polyadenylate-binding protein-interacting protein 5 [Cucumis melo var. makuwa] >TYK31409.1 polyadenylate-binding protein-interacting protein 5 [Cucumis melo var. makuwa])

HSP 1 Score: 364.4 bits (934), Expect = 6.2e-97
Identity = 184/196 (93.88%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60
           MKPHGSSLNPFATSYIPLSQRGANRTFI ENTSRENIGAN+PGYSEQC+Y PPYNNSISP
Sbjct: 32  MKPHGSSLNPFATSYIPLSQRGANRTFIAENTSRENIGANVPGYSEQCLY-PPYNNSISP 91

Query: 61  RLNMNHGKKASV-AGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSE 120
           RLNMNHGKKASV A +AVKNHPF GSLSQQSSDL+EME+FDREVNMD+ELLQVSFPGLSE
Sbjct: 92  RLNMNHGKKASVAASSAVKNHPFHGSLSQQSSDLSEMEIFDREVNMDLELLQVSFPGLSE 151

Query: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQPS 180
           QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYD ESLPDTLDIGDISESGFVTVDQPS
Sbjct: 152 QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDSESLPDTLDIGDISESGFVTVDQPS 211

Query: 181 FRMKNVANQASTSSRF 196
           FRMKNVANQASTSSRF
Sbjct: 212 FRMKNVANQASTSSRF 226

[Close]

BLAST of CsaV3_3G046690.1 vs. NCBI nr
Match: XP_008466368.1 (PREDICTED: polyadenylate-binding protein-interacting protein 5 [Cucumis melo])

HSP 1 Score: 364.4 bits (934), Expect = 6.2e-97
Identity = 184/196 (93.88%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60
           MKPHGSSLNPFATSYIPLSQRGANRTFI ENTSRENIGAN+PGYSEQC+Y PPYNNSISP
Sbjct: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIAENTSRENIGANVPGYSEQCLY-PPYNNSISP 60

Query: 61  RLNMNHGKKASV-AGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSE 120
           RLNMNHGKKASV A +AVKNHPF GSLSQQSSDL+EME+FDREVNMD+ELLQVSFPGLSE
Sbjct: 61  RLNMNHGKKASVAASSAVKNHPFHGSLSQQSSDLSEMEIFDREVNMDLELLQVSFPGLSE 120

Query: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQPS 180
           QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYD ESLPDTLDIGDISESGFVTVDQPS
Sbjct: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDSESLPDTLDIGDISESGFVTVDQPS 180

Query: 181 FRMKNVANQASTSSRF 196
           FRMKNVANQASTSSRF
Sbjct: 181 FRMKNVANQASTSSRF 195

[Close]

BLAST of CsaV3_3G046690.1 vs. NCBI nr
Match: XP_038900178.1 (polyadenylate-binding protein-interacting protein 5-like [Benincasa hispida])

HSP 1 Score: 344.7 bits (883), Expect = 5.1e-91
Identity = 179/212 (84.43%), Postives = 185/212 (87.26%), Query Frame = 0


Query: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENT----------------SRENIGANLPGY 60
           M PHGSSLNP+ATSYIPLSQRGANRTF+ EN+                SRENIGANLPGY
Sbjct: 1   MNPHGSSLNPYATSYIPLSQRGANRTFVAENSSRENIGSKRTFIVENASRENIGANLPGY 60

Query: 61  SEQCVYNPPYNNSISPRLNMNHGKKASVAGA-AVKNHPFLGSLSQQSSDLTEMEMFDREV 120
           SEQCVYNPPY+N ISPRLNM+HGKKA VA A AVKNHPF GSLSQQS DLTEMEMFDREV
Sbjct: 61  SEQCVYNPPYSN-ISPRLNMHHGKKAPVAAASAVKNHPFHGSLSQQSGDLTEMEMFDREV 120

Query: 121 NMDIELLQVSFPGLSEQSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLD 180
           NMD+ELLQVSFPGLSEQSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLD
Sbjct: 121 NMDLELLQVSFPGLSEQSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLD 180

Query: 181 IGDISESGFVTVDQPSFRMKNVANQASTSSRF 196
           IGDISESGFV VDQ SFRMKNVAN ASTSSRF
Sbjct: 181 IGDISESGFVAVDQASFRMKNVANHASTSSRF 211

[Close]

BLAST of CsaV3_3G046690.1 vs. NCBI nr
Match: KAG7024479.1 (Polyadenylate-binding protein-interacting protein 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.8 bits (660), Expect = 3.7e-65
Identity = 134/197 (68.02%), Postives = 155/197 (78.68%), Query Frame = 0


Query: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60
           MKPHGSSLNP+ATSYIP+S+R AN+ FI E++SRENIGANLPG SEQ +           
Sbjct: 65  MKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSEQKMCG--------- 124

Query: 61  RLNMNHGKKA--SVAGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLS 120
            LN+ +GKKA      +AVKNHPF GSLS+ +S+  EME F  EVNM++ELLQ+ FPGLS
Sbjct: 125 -LNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICFPGLS 184

Query: 121 EQSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQP 180
           EQSLTDVYFAN  DLDAA+DML+QLENKHP D EYDPESLPD+LDIGDISESGF   DQ 
Sbjct: 185 EQSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAAADQL 244

Query: 181 SFRMKNVANQASTSSRF 196
           S RMKNVA+ ASTS+RF
Sbjct: 245 SSRMKNVASGASTSTRF 251

[Close]

BLAST of CsaV3_3G046690.1 vs. ExPASy Swiss-Prot
Match: Q9LYE5 (Polyadenylate-binding protein-interacting protein 5 OS=Arabidopsis thaliana OX=3702 GN=CID5 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.9e-17
Identity = 73/193 (37.82%), Postives = 103/193 (53.37%), Query Frame = 0


Query: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60
           MKP   +LNP A SY+P+S+R                  +  G  +  V+      + SP
Sbjct: 1   MKPGAFALNPHAASYVPISKR-----------------VDYGGGDDGLVF-----AAKSP 60

Query: 61  RLNMNHGKKASVAGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSEQ 120
            + ++  KK+S             +  Q   D  ++EM   +++MDIE L V+F GLS++
Sbjct: 61  TVEVSMPKKSSEM-----------AYKQIRDDDLDLEM---DIDMDIEYLLVTFSGLSQE 120

Query: 121 SLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQPSF 180
           S+TDVY AN GDL+A I+ML+QLE    +  E + E+LP+TLDIGDISESG      PS 
Sbjct: 121 SITDVYLANGGDLEATIEMLNQLE---IYSTESE-ENLPETLDIGDISESG------PS- 146

Query: 181 RMKNVANQASTSS 194
             K+    ASTSS
Sbjct: 181 TSKSTEVAASTSS 146

[Close]

BLAST of CsaV3_3G046690.1 vs. ExPASy Swiss-Prot
Match: Q6NQH9 (Polyadenylate-binding protein-interacting protein 6 OS=Arabidopsis thaliana OX=3702 GN=CID6 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.3e-16
Identity = 68/193 (35.23%), Postives = 93/193 (48.19%), Query Frame = 0


Query: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60
           MK   S+LNP+A +Y+PLS+R        E +  +          +Q     PY      
Sbjct: 1   MKSGSSTLNPYAAAYVPLSKR--------EGSLVDTKPVTQQHMQQQHHQQQPYYGYGVQ 60

Query: 61  RLNMNHGKKASVAGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSEQ 120
            +    G + S      K  P     + Q  D       D E++MDIE L  ++PGLS++
Sbjct: 61  GMGSYQGTQMS-----PKKSPSEMVYNHQLKD------EDLEMDMDIEYLLATYPGLSQE 120

Query: 121 SLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQPSF 180
           S+ DVY AN  DLDA I+ML+QLE       EY    LPDTLDIGD+ E     +   S 
Sbjct: 121 SINDVYLANTCDLDATIEMLNQLEIYSTEAEEY----LPDTLDIGDVPE-----IITESS 165

Query: 181 RMKNVANQASTSS 194
           + KN  + AS+SS
Sbjct: 181 KQKNDGSSASSSS 165

[Close]

BLAST of CsaV3_3G046690.1 vs. ExPASy Swiss-Prot
Match: O64843 (Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana OX=3702 GN=CID7 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 8.4e-04
Identity = 33/89 (37.08%), Postives = 46/89 (51.69%), Query Frame = 0


Query: 78  KNHPFLG-SLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSEQSLTDVYFANKGDLDAA 137
           + +PF G S     +D+      D EVN  ++ L   FPG + +SL +VYFAN  DL   
Sbjct: 192 ERNPFSGKSRHGFVNDMITESPGDMEVN-PVDFLASQFPGFAAESLAEVYFANGCDLQLT 251

Query: 138 IDMLSQLE-------NKHPHDVEYDPESL 159
           I+ML+QLE       N++     Y P SL
Sbjct: 252 IEMLTQLELQVDGGLNQNISPKTYAPPSL 279

[Close]

BLAST of CsaV3_3G046690.1 vs. ExPASy TrEMBL
Match: A0A0A0LHC3 (CUE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G878960 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 6.0e-106
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60
           MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP
Sbjct: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60

Query: 61  RLNMNHGKKASVAGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSEQ 120
           RLNMNHGKKASVAGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSEQ
Sbjct: 61  RLNMNHGKKASVAGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSEQ 120

Query: 121 SLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQPSF 180
           SLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQPSF
Sbjct: 121 SLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQPSF 180

Query: 181 RMKNVANQASTSSRF 196
           RMKNVANQASTSSRF
Sbjct: 181 RMKNVANQASTSSRF 195

[Close]

BLAST of CsaV3_3G046690.1 vs. ExPASy TrEMBL
Match: A0A5A7TBQ8 (Polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007180 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.0e-97
Identity = 184/196 (93.88%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60
           MKPHGSSLNPFATSYIPLSQRGANRTFI ENTSRENIGAN+PGYSEQC+Y PPYNNSISP
Sbjct: 32  MKPHGSSLNPFATSYIPLSQRGANRTFIAENTSRENIGANVPGYSEQCLY-PPYNNSISP 91

Query: 61  RLNMNHGKKASV-AGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSE 120
           RLNMNHGKKASV A +AVKNHPF GSLSQQSSDL+EME+FDREVNMD+ELLQVSFPGLSE
Sbjct: 92  RLNMNHGKKASVAASSAVKNHPFHGSLSQQSSDLSEMEIFDREVNMDLELLQVSFPGLSE 151

Query: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQPS 180
           QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYD ESLPDTLDIGDISESGFVTVDQPS
Sbjct: 152 QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDSESLPDTLDIGDISESGFVTVDQPS 211

Query: 181 FRMKNVANQASTSSRF 196
           FRMKNVANQASTSSRF
Sbjct: 212 FRMKNVANQASTSSRF 226

[Close]

BLAST of CsaV3_3G046690.1 vs. ExPASy TrEMBL
Match: A0A1S3CR41 (polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo OX=3656 GN=LOC103503796 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.0e-97
Identity = 184/196 (93.88%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60
           MKPHGSSLNPFATSYIPLSQRGANRTFI ENTSRENIGAN+PGYSEQC+Y PPYNNSISP
Sbjct: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIAENTSRENIGANVPGYSEQCLY-PPYNNSISP 60

Query: 61  RLNMNHGKKASV-AGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSE 120
           RLNMNHGKKASV A +AVKNHPF GSLSQQSSDL+EME+FDREVNMD+ELLQVSFPGLSE
Sbjct: 61  RLNMNHGKKASVAASSAVKNHPFHGSLSQQSSDLSEMEIFDREVNMDLELLQVSFPGLSE 120

Query: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQPS 180
           QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYD ESLPDTLDIGDISESGFVTVDQPS
Sbjct: 121 QSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDSESLPDTLDIGDISESGFVTVDQPS 180

Query: 181 FRMKNVANQASTSSRF 196
           FRMKNVANQASTSSRF
Sbjct: 181 FRMKNVANQASTSSRF 195

[Close]

BLAST of CsaV3_3G046690.1 vs. ExPASy TrEMBL
Match: A0A6J1F6U2 (polyadenylate-binding protein-interacting protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111442652 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.8e-65
Identity = 134/197 (68.02%), Postives = 155/197 (78.68%), Query Frame = 0


Query: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60
           MKPHGSSLNP+ATSYIP+S+R AN+ FI E++SRENIGANLPG SEQ +           
Sbjct: 16  MKPHGSSLNPYATSYIPISKREANKAFIAESSSRENIGANLPGNSEQKMCG--------- 75

Query: 61  RLNMNHGKKA--SVAGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLS 120
            LN+ +GKKA      +AVKNHPF GSLS+ +S+  EME F  EVNM++ELLQ+ FPGLS
Sbjct: 76  -LNLRNGKKAPDDAVASAVKNHPFHGSLSKDNSEFAEMETFHTEVNMELELLQICFPGLS 135

Query: 121 EQSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQP 180
           EQSLTDVYFAN  DLDAA+DML+QLENKHP D EYDPESLPD+LDIGDISESGF   DQ 
Sbjct: 136 EQSLTDVYFANNADLDAAMDMLNQLENKHPSDFEYDPESLPDSLDIGDISESGFAAADQL 195

Query: 181 SFRMKNVANQASTSSRF 196
           S RMKNVA+ ASTS+RF
Sbjct: 196 SSRMKNVASGASTSTRF 202

[Close]

BLAST of CsaV3_3G046690.1 vs. ExPASy TrEMBL
Match: A0A6J1IIU2 (polyadenylate-binding protein-interacting protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111476662 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.7e-63
Identity = 131/197 (66.50%), Postives = 153/197 (77.66%), Query Frame = 0


Query: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60
           MKPHGSSLNP+ATSYIP+S+R AN+ F+ E++SRENIGANLPG SEQ +           
Sbjct: 16  MKPHGSSLNPYATSYIPISKREANKAFMAESSSRENIGANLPGNSEQKMCG--------- 75

Query: 61  RLNMNHGKKA--SVAGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLS 120
            LN+ +GKKA       AVKNHPF GSLS+ +S+ TEME F  EVNM++ELLQ+ FPGLS
Sbjct: 76  -LNLRNGKKAPDDAVAPAVKNHPFHGSLSKDNSEFTEMETFHTEVNMELELLQICFPGLS 135

Query: 121 EQSLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQP 180
           EQSL  VYFAN  DLDAA+DML+QLE+KHP D EYDPESLPD+LDIGDISESGF   DQ 
Sbjct: 136 EQSLAGVYFANNADLDAAMDMLNQLEDKHPSDFEYDPESLPDSLDIGDISESGFAAADQL 195

Query: 181 SFRMKNVANQASTSSRF 196
           S RMKNVA+ ASTS+RF
Sbjct: 196 SSRMKNVASGASTSTRF 202

[Close]

BLAST of CsaV3_3G046690.1 vs. TAIR 10
Match: AT5G11440.1 (CTC-interacting domain 5 )

HSP 1 Score: 89.7 bits (221), Expect = 2.8e-18
Identity = 73/193 (37.82%), Postives = 103/193 (53.37%), Query Frame = 0


Query: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60
           MKP   +LNP A SY+P+S+R                  +  G  +  V+      + SP
Sbjct: 1   MKPGAFALNPHAASYVPISKR-----------------VDYGGGDDGLVF-----AAKSP 60

Query: 61  RLNMNHGKKASVAGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSEQ 120
            + ++  KK+S             +  Q   D  ++EM   +++MDIE L V+F GLS++
Sbjct: 61  TVEVSMPKKSSEM-----------AYKQIRDDDLDLEM---DIDMDIEYLLVTFSGLSQE 120

Query: 121 SLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQPSF 180
           S+TDVY AN GDL+A I+ML+QLE    +  E + E+LP+TLDIGDISESG      PS 
Sbjct: 121 SITDVYLANGGDLEATIEMLNQLE---IYSTESE-ENLPETLDIGDISESG------PS- 146

Query: 181 RMKNVANQASTSS 194
             K+    ASTSS
Sbjct: 181 TSKSTEVAASTSS 146

[Close]

BLAST of CsaV3_3G046690.1 vs. TAIR 10
Match: AT5G25540.1 (CTC-interacting domain 6 )

HSP 1 Score: 86.3 bits (212), Expect = 3.0e-17
Identity = 68/193 (35.23%), Postives = 93/193 (48.19%), Query Frame = 0


Query: 1   MKPHGSSLNPFATSYIPLSQRGANRTFIGENTSRENIGANLPGYSEQCVYNPPYNNSISP 60
           MK   S+LNP+A +Y+PLS+R        E +  +          +Q     PY      
Sbjct: 1   MKSGSSTLNPYAAAYVPLSKR--------EGSLVDTKPVTQQHMQQQHHQQQPYYGYGVQ 60

Query: 61  RLNMNHGKKASVAGAAVKNHPFLGSLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSEQ 120
            +    G + S      K  P     + Q  D       D E++MDIE L  ++PGLS++
Sbjct: 61  GMGSYQGTQMS-----PKKSPSEMVYNHQLKD------EDLEMDMDIEYLLATYPGLSQE 120

Query: 121 SLTDVYFANKGDLDAAIDMLSQLENKHPHDVEYDPESLPDTLDIGDISESGFVTVDQPSF 180
           S+ DVY AN  DLDA I+ML+QLE       EY    LPDTLDIGD+ E     +   S 
Sbjct: 121 SINDVYLANTCDLDATIEMLNQLEIYSTEAEEY----LPDTLDIGDVPE-----IITESS 165

Query: 181 RMKNVANQASTSS 194
           + KN  + AS+SS
Sbjct: 181 KQKNDGSSASSSS 165

[Close]

BLAST of CsaV3_3G046690.1 vs. TAIR 10
Match: AT2G26280.1 (CTC-interacting domain 7 )

HSP 1 Score: 45.4 bits (106), Expect = 5.9e-05
Identity = 33/89 (37.08%), Postives = 46/89 (51.69%), Query Frame = 0


Query: 78  KNHPFLG-SLSQQSSDLTEMEMFDREVNMDIELLQVSFPGLSEQSLTDVYFANKGDLDAA 137
           + +PF G S     +D+      D EVN  ++ L   FPG + +SL +VYFAN  DL   
Sbjct: 192 ERNPFSGKSRHGFVNDMITESPGDMEVN-PVDFLASQFPGFAAESLAEVYFANGCDLQLT 251

Query: 138 IDMLSQLE-------NKHPHDVEYDPESL 159
           I+ML+QLE       N++     Y P SL
Sbjct: 252 IEMLTQLELQVDGGLNQNISPKTYAPPSL 279

The following BLAST results are available for this feature:

BLAST of CsaV3_3G046690.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136335.1	1.2e-105	100.00	polyadenylate-binding protein-interacting protein 5 [Cucumis sativus] >KGN60127....	[more]
KAA0038789.1	6.2e-97	93.88	polyadenylate-binding protein-interacting protein 5 [Cucumis melo var. makuwa] >...	[more]
XP_008466368.1	6.2e-97	93.88	PREDICTED: polyadenylate-binding protein-interacting protein 5 [Cucumis melo]	[more]
XP_038900178.1	5.1e-91	84.43	polyadenylate-binding protein-interacting protein 5-like [Benincasa hispida]	[more]
KAG7024479.1	3.7e-65	68.02	Polyadenylate-binding protein-interacting protein 5 [Cucurbita argyrosperma subs...	[more]

BLAST of CsaV3_3G046690.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYE5	3.9e-17	37.82	Polyadenylate-binding protein-interacting protein 5 OS=Arabidopsis thaliana OX=3...	[more]
Q6NQH9	4.3e-16	35.23	Polyadenylate-binding protein-interacting protein 6 OS=Arabidopsis thaliana OX=3...	[more]
O64843	8.4e-04	37.08	Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana OX=3...	[more]

BLAST of CsaV3_3G046690.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHC3	6.0e-106	100.00	CUE domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G878960 PE=4 SV...	[more]
A0A5A7TBQ8	3.0e-97	93.88	Polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo var. makuwa ...	[more]
A0A1S3CR41	3.0e-97	93.88	polyadenylate-binding protein-interacting protein 5 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A6J1F6U2	1.8e-65	68.02	polyadenylate-binding protein-interacting protein 5-like OS=Cucurbita moschata O...	[more]
A0A6J1IIU2	1.7e-63	66.50	polyadenylate-binding protein-interacting protein 5-like OS=Cucurbita maxima OX=...	[more]

BLAST of CsaV3_3G046690.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11440.1	2.8e-18	37.82	CTC-interacting domain 5	[more]
AT5G25540.1	3.0e-17	35.23	CTC-interacting domain 6	[more]
AT2G26280.1	5.9e-05	37.08	CTC-interacting domain 7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.8.10		coord: 87..148 e-value: 3.2E-6 score: 28.6
None	No IPR available	PANTHER	PTHR37252:SF3	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 6	coord: 1..194
IPR003892	Ubiquitin system component CUE	PFAM	PF02845	CUE	coord: 108..143 e-value: 3.4E-5 score: 23.5
IPR003892	Ubiquitin system component CUE	PROSITE	PS51140	CUE	coord: 102..145 score: 12.429848
IPR038981	Polyadenylate-binding protein-interacting protein 5/6	PANTHER	PTHR37252	POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 6	coord: 1..194
IPR041806	Polyadenylate-binding protein-interacting protein 5/6/7, CUE domain	CDD	cd14371	CUE_CID7_like	coord: 104..146 e-value: 5.1492E-18 score: 71.9072
IPR009060	UBA-like superfamily	SUPERFAMILY	46934	UBA-like	coord: 102..144

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_3G046690	CsaV3_3G046690	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G046690.1.exon4	CsaV3_3G046690.1.exon4	exon
CsaV3_3G046690.1.exon3	CsaV3_3G046690.1.exon3	exon
CsaV3_3G046690.1.exon2	CsaV3_3G046690.1.exon2	exon
CsaV3_3G046690.1.exon1	CsaV3_3G046690.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G046690.1.cds4	CsaV3_3G046690.1.cds4	CDS
CsaV3_3G046690.1.cds3	CsaV3_3G046690.1.cds3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G046690.1	CsaV3_3G046690.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0043130	ubiquitin binding