CsaV3_3G039380.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G039380.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 32352558 .. 32352929 (-)
Sequence length	372
RNA-Seq Expression	CsaV3_3G039380.1
Synteny	CsaV3_3G039380.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCAATTTCGCTCCCTTCGATCTTCATCTTCTCCATTCCCTTTCTCTCTCATCATCACAAAAACAAAAAGGAAAATCAACAGCAGAGAAGGTCCGGTCGATGGGGAAATTCGTTGAATTGTTGGACGTAGGAGTAAGAATGGCGGCGAGATTTCACTCTCACTGTCCTCAAACTGCACGGCTCTACTACCATCCTCCCTCCGATCACGACTCCGACGGCCACCACCACCACCACCATTATTTGCACCAGATTTTTCAGGCGTACGACGGCGGACACTCAACGGAGCTAGTGACGGCATATGGAATGAAGACGGTGGCCATGGATGGGAGTTTTGATGCGGAGAATGTGTTTCATTCGGCGGATTTTTGA

mRNA sequence

ATGCCCAATTTCGCTCCCTTCGATCTTCATCTTCTCCATTCCCTTTCTCTCTCATCATCACAAAAACAAAAAGGAAAATCAACAGCAGAGAAGGTCCGGTCGATGGGGAAATTCGTTGAATTGTTGGACGTAGGAGTAAGAATGGCGGCGAGATTTCACTCTCACTGTCCTCAAACTGCACGGCTCTACTACCATCCTCCCTCCGATCACGACTCCGACGGCCACCACCACCACCACCATTATTTGCACCAGATTTTTCAGGCGTACGACGGCGGACACTCAACGGAGCTAGTGACGGCATATGGAATGAAGACGGTGGCCATGGATGGGAGTTTTGATGCGGAGAATGTGTTTCATTCGGCGGATTTTTGA

Coding sequence (CDS)

ATGCCCAATTTCGCTCCCTTCGATCTTCATCTTCTCCATTCCCTTTCTCTCTCATCATCACAAAAACAAAAAGGAAAATCAACAGCAGAGAAGGTCCGGTCGATGGGGAAATTCGTTGAATTGTTGGACGTAGGAGTAAGAATGGCGGCGAGATTTCACTCTCACTGTCCTCAAACTGCACGGCTCTACTACCATCCTCCCTCCGATCACGACTCCGACGGCCACCACCACCACCACCATTATTTGCACCAGATTTTTCAGGCGTACGACGGCGGACACTCAACGGAGCTAGTGACGGCATATGGAATGAAGACGGTGGCCATGGATGGGAGTTTTGATGCGGAGAATGTGTTTCATTCGGCGGATTTTTGA

Protein sequence

MPNFAPFDLHLLHSLSLSSSQKQKGKSTAEKVRSMGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGHSTELVTAYGMKTVAMDGSFDAENVFHSADF*

Homology

[Close]

BLAST of CsaV3_3G039380.1 vs. NCBI nr
Match: KGN59359.1 (hypothetical protein Csa_002350 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 5.7e-64
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MPNFAPFDLHLLHSLSLSSSQKQKGKSTAEKVRSMGKFVELLDVGVRMAARFHSHCPQTA 60
           MPNFAPFDLHLLHSLSLSSSQKQKGKSTAEKVRSMGKFVELLDVGVRMAARFHSHCPQTA
Sbjct: 1   MPNFAPFDLHLLHSLSLSSSQKQKGKSTAEKVRSMGKFVELLDVGVRMAARFHSHCPQTA 60

Query: 61  RLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGHSTELVTAYGMKTVAMDGSFDAENVFHS 120
           RLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGHSTELVTAYGMKTVAMDGSFDAENVFHS
Sbjct: 61  RLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGHSTELVTAYGMKTVAMDGSFDAENVFHS 120

Query: 121 ADF 124
           ADF
Sbjct: 121 ADF 123

[Close]

BLAST of CsaV3_3G039380.1 vs. NCBI nr
Match: XP_011652134.1 (uncharacterized protein LOC105434988 [Cucumis sativus])

HSP 1 Score: 190.3 bits (482), Expect = 1.0e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 35  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGHS 94
           MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGHS
Sbjct: 1   MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGHS 60

Query: 95  TELVTAYGMKTVAMDGSFDAENVFHSADF 124
           TELVTAYGMKTVAMDGSFDAENVFHSADF
Sbjct: 61  TELVTAYGMKTVAMDGSFDAENVFHSADF 89

[Close]

BLAST of CsaV3_3G039380.1 vs. NCBI nr
Match: XP_008443147.1 (PREDICTED: uncharacterized protein LOC103486822 [Cucumis melo] >KAA0043681.1 uncharacterized protein E6C27_scaffold236G00060 [Cucumis melo var. makuwa] >TYK25450.1 uncharacterized protein E5676_scaffold352G005960 [Cucumis melo var. makuwa])

HSP 1 Score: 171.0 bits (432), Expect = 6.4e-39
Identity = 85/93 (91.40%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 35  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYD---- 94
           MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSD HHHH HYLHQIFQAYD    
Sbjct: 1   MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSD-HHHHQHYLHQIFQAYDGGRH 60

Query: 95  GGHSTELVTAYGMKTVAMDGSFDAENVFHSADF 124
           GGHSTELVTAYGMKT+A DGSFDAENVFHSADF
Sbjct: 61  GGHSTELVTAYGMKTMATDGSFDAENVFHSADF 92

[Close]

BLAST of CsaV3_3G039380.1 vs. NCBI nr
Match: KAG6580839.1 (hypothetical protein SDJN03_20841, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017595.1 hypothetical protein SDJN02_19461, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.2 bits (339), Expect = 3.9e-28
Identity = 69/93 (74.19%), Postives = 76/93 (81.72%), Query Frame = 0


Query: 35  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYD---- 94
           M KFVELLDVGVRMAARFH+HCPQTARLYYHPPSDHD D   +HH+YLHQ FQA D    
Sbjct: 1   MAKFVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDGD---NHHNYLHQFFQASDGFRH 60

Query: 95  GGHSTELVTAYGMKTVAMDGSFDAENVFHSADF 124
           GGHST+LVT  G++TVAM   FDAE VFH+ADF
Sbjct: 61  GGHSTDLVTGCGVETVAMARGFDAEIVFHTADF 90

[Close]

BLAST of CsaV3_3G039380.1 vs. NCBI nr
Match: KAG6596209.1 (hypothetical protein SDJN03_09389, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129.4 bits (324), Expect = 2.1e-26
Identity = 67/88 (76.14%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 34  SMGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGH 93
           SMGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHD D HHHHH+Y H +FQAYDGG 
Sbjct: 35  SMGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDGD-HHHHHNYFHHVFQAYDGGR 94

Query: 94  ----STELVTAYGMKTVAMDGSFDAENV 118
               ST+LV A G+ TVAM    DAE V
Sbjct: 95  HAGPSTDLVEACGVDTVAMARGSDAEVV 121

[Close]

BLAST of CsaV3_3G039380.1 vs. ExPASy TrEMBL
Match: A0A0A0LEL3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G813040 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 2.8e-64
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MPNFAPFDLHLLHSLSLSSSQKQKGKSTAEKVRSMGKFVELLDVGVRMAARFHSHCPQTA 60
           MPNFAPFDLHLLHSLSLSSSQKQKGKSTAEKVRSMGKFVELLDVGVRMAARFHSHCPQTA
Sbjct: 1   MPNFAPFDLHLLHSLSLSSSQKQKGKSTAEKVRSMGKFVELLDVGVRMAARFHSHCPQTA 60

Query: 61  RLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGHSTELVTAYGMKTVAMDGSFDAENVFHS 120
           RLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGHSTELVTAYGMKTVAMDGSFDAENVFHS
Sbjct: 61  RLYYHPPSDHDSDGHHHHHHYLHQIFQAYDGGHSTELVTAYGMKTVAMDGSFDAENVFHS 120

Query: 121 ADF 124
           ADF
Sbjct: 121 ADF 123

[Close]

BLAST of CsaV3_3G039380.1 vs. ExPASy TrEMBL
Match: A0A5A7TQ55 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005960 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 3.1e-39
Identity = 85/93 (91.40%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 35  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYD---- 94
           MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSD HHHH HYLHQIFQAYD    
Sbjct: 1   MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSD-HHHHQHYLHQIFQAYDGGRH 60

Query: 95  GGHSTELVTAYGMKTVAMDGSFDAENVFHSADF 124
           GGHSTELVTAYGMKT+A DGSFDAENVFHSADF
Sbjct: 61  GGHSTELVTAYGMKTMATDGSFDAENVFHSADF 92

[Close]

BLAST of CsaV3_3G039380.1 vs. ExPASy TrEMBL
Match: A0A1S3B7E5 (uncharacterized protein LOC103486822 OS=Cucumis melo OX=3656 GN=LOC103486822 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 3.1e-39
Identity = 85/93 (91.40%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 35  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYD---- 94
           MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSD HHHH HYLHQIFQAYD    
Sbjct: 1   MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSD-HHHHQHYLHQIFQAYDGGRH 60

Query: 95  GGHSTELVTAYGMKTVAMDGSFDAENVFHSADF 124
           GGHSTELVTAYGMKT+A DGSFDAENVFHSADF
Sbjct: 61  GGHSTELVTAYGMKTMATDGSFDAENVFHSADF 92

[Close]

BLAST of CsaV3_3G039380.1 vs. ExPASy TrEMBL
Match: A0A6J1DN79 (uncharacterized protein LOC111021559 OS=Momordica charantia OX=3673 GN=LOC111021559 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.5e-22
Identity = 63/93 (67.74%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 35  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQAYD-GGH 94
           M K VELLDVGVRMAARFH+HCPQTARLYYHPPSDHD       HHYLHQI  AYD GGH
Sbjct: 1   MAKLVELLDVGVRMAARFHAHCPQTARLYYHPPSDHDD-----QHHYLHQILHAYDGGGH 60

Query: 95  ST-ELVTAYGMKTV--AMDGSFDAENVFHSADF 124
           ST   V+  G++T   A   SFD E VFH+ADF
Sbjct: 61  STAHQVSGCGIETAARARARSFDTEIVFHTADF 88

[Close]

BLAST of CsaV3_3G039380.1 vs. ExPASy TrEMBL
Match: A0A059DHX5 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02351 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 55/105 (52.38%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 2   PNFAPFDLHLLHSLSLSSSQKQKGKSTAEKVRSMGKFVELLDVGVRMAARFHSHCPQTAR 61
           P+F      +   LSLS S+ +  +      R MGK+VELLD+GVR+AARFHSHCPQTAR
Sbjct: 22  PSFLSHKRQISLYLSLSLSRSRTAEEQGSVERDMGKYVELLDLGVRVAARFHSHCPQTAR 81

Query: 62  LYYHPPSDHDSDGHHHHHHYLHQIFQAYDGG--------HSTELV 99
           LYYHPPS+HD D HHHHH   H    A DG          STEL+
Sbjct: 82  LYYHPPSNHD-DHHHHHHRDFHSSGGASDGSCPDHRLRIDSTELI 125

[Close]

BLAST of CsaV3_3G039380.1 vs. TAIR 10
Match: AT3G57450.1 (unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.5 bits (184), Expect = 3.4e-14
Identity = 43/80 (53.75%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 35  MGKFVELLDVGVRMAARFHSHCPQTARLYYHPPSDHDSDGHHHHHHYLHQIFQA----YD 94
           MGK+ E+LDVGVR+AARFHSHCPQTARLYYHPPSD     +HHHH  +  +         
Sbjct: 1   MGKYTEMLDVGVRIAARFHSHCPQTARLYYHPPSD-----NHHHHGGVKDLIGGGGVLGS 60

Query: 95  GGHSTELVTAYGMKTVAMDG 111
           G +ST LV   G  T    G
Sbjct: 61  GQNSTGLVGGLGTGTGTTGG 75

The following BLAST results are available for this feature:

BLAST of CsaV3_3G039380.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59359.1	5.7e-64	100.00	hypothetical protein Csa_002350 [Cucumis sativus]	[more]
XP_011652134.1	1.0e-44	100.00	uncharacterized protein LOC105434988 [Cucumis sativus]	[more]
XP_008443147.1	6.4e-39	91.40	PREDICTED: uncharacterized protein LOC103486822 [Cucumis melo] >KAA0043681.1 unc...	[more]
KAG6580839.1	3.9e-28	74.19	hypothetical protein SDJN03_20841, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6596209.1	2.1e-26	76.14	hypothetical protein SDJN03_09389, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsaV3_3G039380.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G039380.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEL3	2.8e-64	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G813040 PE=4 SV=1	[more]
A0A5A7TQ55	3.1e-39	91.40	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B7E5	3.1e-39	91.40	uncharacterized protein LOC103486822 OS=Cucumis melo OX=3656 GN=LOC103486822 PE=...	[more]
A0A6J1DN79	4.5e-22	67.74	uncharacterized protein LOC111021559 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A059DHX5	1.3e-16	52.38	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02351 PE=4 SV...	[more]

BLAST of CsaV3_3G039380.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57450.1	3.4e-14	53.75	unknown protein; Has 65 Blast hits to 65 proteins in 11 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33983:SF13	SUBFAMILY NOT NAMED	coord: 35..122
None	No IPR available	PANTHER	PTHR33983	OS07G0185900 PROTEIN	coord: 35..122

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_3G039380	CsaV3_3G039380	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G039380.1.exon1	CsaV3_3G039380.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G039380.1.cds1	CsaV3_3G039380.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G039380.1	CsaV3_3G039380.1-protein	polypeptide