CsaV3_3G036890.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G036890.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Ribosome biogenesis protein RLP24
Location	chr3: 30521680 .. 30522423 (+)
Sequence length	465
RNA-Seq Expression	CsaV3_3G036890.1
Synteny	CsaV3_3G036890.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCGAGGGTAAGGGCATAAATTTGTTCTCTTATTGTGAAGTTTATTGACGTTCAACACCTTTCTCGGCCTTTGGCTAAGATCTAATGTAGTATCTAAAGGTTCCAAACTTTCATGTTTTGTGTGTCGTGCTCTACTTCTTGCTTGCATGTAATTTGCTTGTGGTATGTCTCGCCAATTTTATTTAATAACAACAGATTGACGAGACAACACCATCCTGTTCTATCTTGGCCTGTTTGTAATTTGTTGTTTCCTATGCTTACTAGACTGTAGAAGTAGATGTTTTTTTTTCGTTGGGGTCTTAAATTAGTGTTGATGGGGAGAACCACATGATCCTATTTCCAAATATGATTTTTTCTGCACATTTTTAGATTTTGTCGATCAAAATGGCACAAGAACTTTAAGATGAAGAGAAATCCCCGTAAAGTAAAATGGACCAAGGCATATATAGGAGGTTGCATGGAAAAGGATGTGACATGGGTAAACATGAAAGTTTATAATCCAGGACTCAACTTTTGAGTTCGAGAGGAAGCGCAATAGACCAGAGAGATATGACAGGAATTTCGCCGAAGAGCCACTGAAGGCTATAAAGAAGATTGATAAAGACACAGCGGATGCGTGGAAAGAAAGCAAAGGGGCTAGAAGAGGATCAGAAGGAGGATCATTCCCTCACCCTTCCAAAGATCAAAGTCAAGGGGGTACCAATCAGAAGCAGAGCAAAATCAGCCCAATGGAAGAATGA

mRNA sequence

ATGATGCGAGGTTTATTGACGTTCAACACCTTTCTCGGCCTTTGGCTAAGATCTAATGTAGTATCTAAAGGTTCCAAACTTTCATGTTTTGTGTGTCGTGCTCTACTTCTTGCTTGCATATTTTGTCGATCAAAATGGCACAAGAACTTTAAGATGAAGAGAAATCCCCGTAAAGTAAAATGGACCAAGGCATATATAGGAGGTTGCATGGAAAAGGATGTGACATGGGACTCAACTTTTGAGTTCGAGAGGAAGCGCAATAGACCAGAGAGATATGACAGGAATTTCGCCGAAGAGCCACTGAAGGCTATAAAGAAGATTGATAAAGACACAGCGGATGCGTGGAAAGAAAGCAAAGGGGCTAGAAGAGGATCAGAAGGAGGATCATTCCCTCACCCTTCCAAAGATCAAAGTCAAGGGGGTACCAATCAGAAGCAGAGCAAAATCAGCCCAATGGAAGAATGA

Coding sequence (CDS)

ATGATGCGAGGTTTATTGACGTTCAACACCTTTCTCGGCCTTTGGCTAAGATCTAATGTAGTATCTAAAGGTTCCAAACTTTCATGTTTTGTGTGTCGTGCTCTACTTCTTGCTTGCATATTTTGTCGATCAAAATGGCACAAGAACTTTAAGATGAAGAGAAATCCCCGTAAAGTAAAATGGACCAAGGCATATATAGGAGGTTGCATGGAAAAGGATGTGACATGGGACTCAACTTTTGAGTTCGAGAGGAAGCGCAATAGACCAGAGAGATATGACAGGAATTTCGCCGAAGAGCCACTGAAGGCTATAAAGAAGATTGATAAAGACACAGCGGATGCGTGGAAAGAAAGCAAAGGGGCTAGAAGAGGATCAGAAGGAGGATCATTCCCTCACCCTTCCAAAGATCAAAGTCAAGGGGGTACCAATCAGAAGCAGAGCAAAATCAGCCCAATGGAAGAATGA

Protein sequence

MMRGLLTFNTFLGLWLRSNVVSKGSKLSCFVCRALLLACIFCRSKWHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKDQSQGGTNQKQSKISPMEE*

Homology

[Close]

BLAST of CsaV3_3G036890.1 vs. NCBI nr
Match: KAE8651076.1 (hypothetical protein Csa_002111 [Cucumis sativus])

HSP 1 Score: 315.8 bits (808), Expect = 2.0e-82
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MMRGLLTFNTFLGLWLRSNVVSKGSKLSCFVCRALLLACIFCRSKWHKNFKMKRNPRKVK 60
           MMRGLLTFNTFLGLWLRSNVVSKGSKLSCFVCRALLLACIFCRSKWHKNFKMKRNPRKVK
Sbjct: 1   MMRGLLTFNTFLGLWLRSNVVSKGSKLSCFVCRALLLACIFCRSKWHKNFKMKRNPRKVK 60

Query: 61  WTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKG 120
           WTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKG
Sbjct: 61  WTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTADAWKESKG 120

Query: 121 ARRGSEGGSFPHPSKDQSQGGTNQKQSKISPMEE 155
           ARRGSEGGSFPHPSKDQSQGGTNQKQSKISPMEE
Sbjct: 121 ARRGSEGGSFPHPSKDQSQGGTNQKQSKISPMEE 154

[Close]

BLAST of CsaV3_3G036890.1 vs. NCBI nr
Match: KAB5541711.1 (hypothetical protein DKX38_014685 [Salix brachista])

HSP 1 Score: 114.4 bits (285), Expect = 8.9e-22
Identity = 66/99 (66.67%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 16  LRSNV-VSKGSKLSCFVCRALLLACIFCRSKWHKNFKMKRNPRKVKWTKAYIGGCMEKDV 75
           LR+ +  SK  K  CF     L+   FCRSK HKNFKMKRNPRKVKWTKAY      KD+
Sbjct: 41  LRNEIDTSKSLKSQCFSLTVDLI-FRFCRSKCHKNFKMKRNPRKVKWTKAY-RRLHGKDM 100

Query: 76  TWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD 114
           T DSTFEFERKRNRPERYDRN AE  LKAIKKIDK  +D
Sbjct: 101 TQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKVRSD 137

[Close]

BLAST of CsaV3_3G036890.1 vs. NCBI nr
Match: TYJ17996.1 (hypothetical protein E1A91_A09G091800v1 [Gossypium mustelinum])

HSP 1 Score: 114.4 bits (285), Expect = 8.9e-22
Identity = 65/107 (60.75%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 15  WLRSNVVSKGSKLSC--------FVCRALLLACIFCRSKWHKNFKMKRNPRKVKWTKAYI 74
           W  S+ V  G  +S         ++   LL    FCRSK HKNFKMKRNPRKVKWTKAY 
Sbjct: 30  WFCSSTVYPGHGVSFLLLHVFKGYITLLLLKIFHFCRSKCHKNFKMKRNPRKVKWTKAY- 89

Query: 75  GGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD 114
                KD+T DSTFEFERKRNRPERYDRN AE  LKAIKKIDK  +D
Sbjct: 90  SRLHRKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRSD 135

[Close]

BLAST of CsaV3_3G036890.1 vs. NCBI nr
Match: XP_016753721.2 (probable ribosome biogenesis protein RLP24 [Gossypium hirsutum] >KAG4196357.1 hypothetical protein ERO13_A06G167400v2 [Gossypium hirsutum])

HSP 1 Score: 114.4 bits (285), Expect = 8.9e-22
Identity = 65/99 (65.66%), Postives = 70/99 (70.71%), Query Frame = 0


Query: 15  WLRSNVVSKGSKLSCFVCRALLLACIFCRSKWHKNFKMKRNPRKVKWTKAYIGGCMEKDV 74
           W  S+ V  G  +  FV     + C FCRSK HKNFKMKRNPRKVKWTKAY      KD+
Sbjct: 7   WFCSSTVYPGHGIQ-FVRNDAKIFC-FCRSKCHKNFKMKRNPRKVKWTKAY-RRLHGKDM 66

Query: 75  TWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD 114
           T DSTFEFERKRNRPERYDRN AE  LKAIKKIDK  +D
Sbjct: 67  TQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRSD 102

[Close]

BLAST of CsaV3_3G036890.1 vs. NCBI nr
Match: XP_022858257.1 (probable ribosome biogenesis protein RLP24 [Olea europaea var. sylvestris] >CAA2994623.1 probable ribosome biogenesis RLP24 [Olea europaea subsp. europaea])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-21
Identity = 60/75 (80.00%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 41  FCRSKWHKNFKMKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAE 100
           FCRSK HKNFKMKRNPRKVKWTKAY  + G   KD+T DSTFEFERKRNRPERYDRN AE
Sbjct: 31  FCRSKCHKNFKMKRNPRKVKWTKAYRRVHG---KDMTQDSTFEFERKRNRPERYDRNVAE 90

Query: 101 EPLKAIKKIDKDTAD 114
           E LKAIKKIDK   D
Sbjct: 91  ETLKAIKKIDKVRVD 102

[Close]

BLAST of CsaV3_3G036890.1 vs. ExPASy Swiss-Prot
Match: O22165 (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-20
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 41  FCRSKWHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEP 100
           FCRSK HKNFKMKRNPRKVKWTKA+      KD+T D+TFEFE+KRNRPERYDRN  E  
Sbjct: 31  FCRSKCHKNFKMKRNPRKVKWTKAF-RAAHGKDMTKDTTFEFEKKRNRPERYDRNVTENT 90

Query: 101 LKAIKKIDK 110
           L AIKKI K
Sbjct: 91  LMAIKKIAK 98

[Close]

BLAST of CsaV3_3G036890.1 vs. ExPASy Swiss-Prot
Match: Q86B05 (Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 GN=rlp24 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.1e-14
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 0


Query: 41  FCRSKWHKNFKMKRNPRKVKWTKAY--IGGCMEKDVTWDSTFEFERKRNRPERYDRNFAE 100
           FCRSK HKNFK+KRNPRK +WTKA+  + G   K++T D T EFE+KRNRP +YDR    
Sbjct: 31  FCRSKCHKNFKLKRNPRKTRWTKAFRKLNG---KEMTVDKTLEFEKKRNRPVKYDRELIN 90

Query: 101 EPLKAIKKIDK 110
             + A+ ++ K
Sbjct: 91  NTIIAMARVQK 98

[Close]

BLAST of CsaV3_3G036890.1 vs. ExPASy Swiss-Prot
Match: Q3SZ12 (Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.0e-13
Identity = 34/69 (49.28%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 41  FCRSKWHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEP 100
           FC+SK HKNFK KRNPRKV+WTKA+      K++T D++FEFE++RN P +Y R    + 
Sbjct: 31  FCKSKCHKNFKKKRNPRKVRWTKAF-RKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKT 90

Query: 101 LKAIKKIDK 110
           + A+K++++
Sbjct: 91  IDAMKRVEE 98

[Close]

BLAST of CsaV3_3G036890.1 vs. ExPASy Swiss-Prot
Match: Q99L28 (Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.0e-13
Identity = 34/69 (49.28%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 41  FCRSKWHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEP 100
           FC+SK HKNFK KRNPRKV+WTKA+      K++T D++FEFE++RN P +Y R    + 
Sbjct: 31  FCKSKCHKNFKKKRNPRKVRWTKAF-RKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKT 90

Query: 101 LKAIKKIDK 110
           + A+K++++
Sbjct: 91  IDAMKRVEE 98

[Close]

BLAST of CsaV3_3G036890.1 vs. ExPASy Swiss-Prot
Match: Q6P6G7 (Probable ribosome biogenesis protein RLP24 OS=Rattus norvegicus OX=10116 GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.0e-13
Identity = 34/69 (49.28%), Postives = 51/69 (73.91%), Query Frame = 0


Query: 41  FCRSKWHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEP 100
           FC+SK HKNFK KRNPRKV+WTKA+      K++T D++FEFE++RN P +Y R    + 
Sbjct: 31  FCKSKCHKNFKKKRNPRKVRWTKAF-RKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKT 90

Query: 101 LKAIKKIDK 110
           + A+K++++
Sbjct: 91  IDAMKRVEE 98

[Close]

BLAST of CsaV3_3G036890.1 vs. ExPASy TrEMBL
Match: A0A0A0LDW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G750900 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 3.4e-59
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 41  FCRSKWHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEP 100
           FCRSKWHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEP
Sbjct: 5   FCRSKWHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEP 64

Query: 101 LKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKDQSQGGTNQKQSKISPMEE 155
           LKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKDQSQGGTNQKQSKISPMEE
Sbjct: 65  LKAIKKIDKDTADAWKESKGARRGSEGGSFPHPSKDQSQGGTNQKQSKISPMEE 118

[Close]

BLAST of CsaV3_3G036890.1 vs. ExPASy TrEMBL
Match: A0A1D1Z518 (Putative ribosome biogenesis protein RLP24 OS=Anthurium amnicola OX=1678845 GN=At2g44860_1 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.9e-22
Identity = 63/95 (66.32%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 15  WLRSNVVSKGSKLSCFVCRALLLACIFCRSKWHKNFKMKRNPRKVKWTKAYIGGCMEKDV 74
           W  S+ V  G  +  F C + +    FCRSK HKNFKMKRNPRKVKWTKAY      KD+
Sbjct: 7   WFCSSNVYPGHGIQFFSCDSKIFR--FCRSKCHKNFKMKRNPRKVKWTKAY-RRLHGKDM 66

Query: 75  TWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDK 110
           T DSTFEFERKRNRPERYDRN AE  LKAIKKIDK
Sbjct: 67  TQDSTFEFERKRNRPERYDRNVAESTLKAIKKIDK 98

[Close]

BLAST of CsaV3_3G036890.1 vs. ExPASy TrEMBL
Match: A0A5N5LI25 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_014685 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.3e-22
Identity = 66/99 (66.67%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 16  LRSNV-VSKGSKLSCFVCRALLLACIFCRSKWHKNFKMKRNPRKVKWTKAYIGGCMEKDV 75
           LR+ +  SK  K  CF     L+   FCRSK HKNFKMKRNPRKVKWTKAY      KD+
Sbjct: 41  LRNEIDTSKSLKSQCFSLTVDLI-FRFCRSKCHKNFKMKRNPRKVKWTKAY-RRLHGKDM 100

Query: 76  TWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD 114
           T DSTFEFERKRNRPERYDRN AE  LKAIKKIDK  +D
Sbjct: 101 TQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKVRSD 137

[Close]

BLAST of CsaV3_3G036890.1 vs. ExPASy TrEMBL
Match: A0A5D2XVV8 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A09G091800v1 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.3e-22
Identity = 65/107 (60.75%), Postives = 71/107 (66.36%), Query Frame = 0


Query: 15  WLRSNVVSKGSKLSC--------FVCRALLLACIFCRSKWHKNFKMKRNPRKVKWTKAYI 74
           W  S+ V  G  +S         ++   LL    FCRSK HKNFKMKRNPRKVKWTKAY 
Sbjct: 30  WFCSSTVYPGHGVSFLLLHVFKGYITLLLLKIFHFCRSKCHKNFKMKRNPRKVKWTKAY- 89

Query: 75  GGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEPLKAIKKIDKDTAD 114
                KD+T DSTFEFERKRNRPERYDRN AE  LKAIKKIDK  +D
Sbjct: 90  SRLHRKDMTQDSTFEFERKRNRPERYDRNLAENTLKAIKKIDKIRSD 135

[Close]

BLAST of CsaV3_3G036890.1 vs. ExPASy TrEMBL
Match: A0A6P5X8M0 (probable ribosome biogenesis protein RLP24 OS=Durio zibethinus OX=66656 GN=LOC111280762 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.3e-22
Identity = 58/73 (79.45%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 41  FCRSKWHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEP 100
           FCRSK HKNFKMKRNPRKVKWTKAY    + KD+T DSTFEFERKRNRPERYDRN AE  
Sbjct: 31  FCRSKCHKNFKMKRNPRKVKWTKAY-RRLLGKDMTQDSTFEFERKRNRPERYDRNIAENT 90

Query: 101 LKAIKKIDKDTAD 114
           LKAIKKIDK  +D
Sbjct: 91  LKAIKKIDKIRSD 102

[Close]

BLAST of CsaV3_3G036890.1 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 100.9 bits (250), Expect = 9.4e-22
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 41  FCRSKWHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEP 100
           FCRSK HKNFKMKRNPRKVKWTKA+      KD+T D+TFEFE+KRNRPERYDRN  E  
Sbjct: 31  FCRSKCHKNFKMKRNPRKVKWTKAF-RAAHGKDMTKDTTFEFEKKRNRPERYDRNVTENT 90

Query: 101 LKAIKKIDK 110
           L AIKKI K
Sbjct: 91  LMAIKKIAK 98

[Close]

BLAST of CsaV3_3G036890.1 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 100.9 bits (250), Expect = 9.4e-22
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 41  FCRSKWHKNFKMKRNPRKVKWTKAYIGGCMEKDVTWDSTFEFERKRNRPERYDRNFAEEP 100
           FCRSK HKNFKMKRNPRKVKWTKA+      KD+T D+TFEFE+KRNRPERYDRN  E  
Sbjct: 31  FCRSKCHKNFKMKRNPRKVKWTKAF-RAAHGKDMTKDTTFEFEKKRNRPERYDRNVTENT 90

Query: 101 LKAIKKIDK 110
           L AIKKI K
Sbjct: 91  LMAIKKIAK 98

The following BLAST results are available for this feature:

BLAST of CsaV3_3G036890.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651076.1	2.0e-82	100.00	hypothetical protein Csa_002111 [Cucumis sativus]	[more]
KAB5541711.1	8.9e-22	66.67	hypothetical protein DKX38_014685 [Salix brachista]	[more]
TYJ17996.1	8.9e-22	60.75	hypothetical protein E1A91_A09G091800v1 [Gossypium mustelinum]	[more]
XP_016753721.2	8.9e-22	65.66	probable ribosome biogenesis protein RLP24 [Gossypium hirsutum] >KAG4196357.1 hy...	[more]
XP_022858257.1	1.2e-21	80.00	probable ribosome biogenesis protein RLP24 [Olea europaea var. sylvestris] >CAA2...	[more]

BLAST of CsaV3_3G036890.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22165	1.3e-20	73.91	Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q86B05	7.1e-14	53.52	Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 ...	[more]
Q3SZ12	6.0e-13	49.28	Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2...	[more]
Q99L28	6.0e-13	49.28	Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 P...	[more]
Q6P6G7	6.0e-13	49.28	Probable ribosome biogenesis protein RLP24 OS=Rattus norvegicus OX=10116 GN=Rsl2...	[more]

BLAST of CsaV3_3G036890.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDW1	3.4e-59	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G750900 PE=3 SV=1	[more]
A0A1D1Z518	1.9e-22	66.32	Putative ribosome biogenesis protein RLP24 OS=Anthurium amnicola OX=1678845 GN=A...	[more]
A0A5N5LI25	4.3e-22	66.67	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_014685 PE=3 SV=1	[more]
A0A5D2XVV8	4.3e-22	60.75	Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_A09G091800v1 P...	[more]
A0A6P5X8M0	7.3e-22	79.45	probable ribosome biogenesis protein RLP24 OS=Durio zibethinus OX=66656 GN=LOC11...	[more]

BLAST of CsaV3_3G036890.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44860.1	9.4e-22	73.91	Ribosomal protein L24e family protein	[more]
AT2G44860.2	9.4e-22	73.91	Ribosomal protein L24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038630	Ribosomal protein L24e/L24 superfamily	GENE3D	2.30.170.20	Ribosomal protein L24e	coord: 28..66 e-value: 2.8E-10 score: 42.2
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 39..65 e-value: 6.0E-10 score: 39.2
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 15..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..154
None	No IPR available	PANTHER	PTHR10792:SF36	BNAA04G10330D PROTEIN	coord: 15..111
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 39..65

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_3G036890	CsaV3_3G036890	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G036890.1.exon1	CsaV3_3G036890.1.exon1	exon
CsaV3_3G036890.1.exon2	CsaV3_3G036890.1.exon2	exon
CsaV3_3G036890.1.exon3	CsaV3_3G036890.1.exon3	exon
CsaV3_3G036890.1.exon4	CsaV3_3G036890.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G036890.1.cds1	CsaV3_3G036890.1.cds1	CDS
CsaV3_3G036890.1.cds2	CsaV3_3G036890.1.cds2	CDS
CsaV3_3G036890.1.cds3	CsaV3_3G036890.1.cds3	CDS
CsaV3_3G036890.1.cds4	CsaV3_3G036890.1.cds4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G036890.1	CsaV3_3G036890.1-protein	polypeptide