CsaV3_3G034420.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G034420.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	TIP41-like protein
Location	chr3: 29186055 .. 29187874 (-)
Sequence length	687
RNA-Seq Expression	CsaV3_3G034420.1
Synteny	CsaV3_3G034420.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTCGAGAATGGACATTATACAAATCGTATGTACATGTACATTACATTCACGACTCACCCATGAAGCCCCAATACACTTTTATTTATTAAAAATTCCTTTTTTCTTTCTTCTATAAAGAATCACTCTCTTTTCAATATTTGTCCTCTTCCACCTTTCTATTCACTTTATAGGCTTCGCGTTTCCTCTGTTTCTGATTCCATTGTGTGTTCGACTTGGTCGGTGGCGTTTTCTTTAAACAATGGTCATGGCTGAGAGTTTGGATGACAACGAGTTTTGGCTTCCTCCTCAGTTTCTTGCTGATGATGATAACATGTTACACCAAAATGACCAAAACTGCTGCTTGGATGAATCATTGGAGGGTTCAAGCGAGACGTTAAGAGACGAGGAGGATTCTGTCTCTGGTTTGATTCTTCGTATGCCTCGCTTCACCATTGATGACGTTCGTTTCAATTTCCAACATAGTTGATCCTCTGTTTCTTGTAGTTTTATTTTATCTGATCTTGGGTTTTCTTTTCTTTTCTAGATATTGGTTTTGTCTGGATCACCACAATCCACTCTGTGTGATATGGAGAGTGGAAGTAGCTGTAGTCAAGTTTCTAGTCGTGGAAGTCCAAAAGCTAATTCTAAGGCTCAATCTCCTCCGCCTTCAAGGGATTTGTTGCATGCGGTTGCAGAGGAAGTTGCGAGGATGCGAATCAATGAGAGCCATGGGGGGTTTCTTCATCAAAACAGAGGAACATCTCAAGTCTTTGTTCCGGTGAAAAACCCGACGACTGGTACCGGATTCTACCTGAAGTTGCATGGTCCGCAAGTAAATCTCTTAACTGCCTTACGGTGGTCAATTGGGAATTTGTATTTGTGTTGAATTAGCAACTCTATTTACTTCCTCATTGGACTCAAATTCTTATGCAGCGACAGAACTTGACTGTTGATGAGCAGATAAATTCTCATGAGATGGTTCAAAATGGAATGAGTGACTACAACAGATTGTCCTCATCGGCGTGGCTTCCACCGCCACAGGGCTCTAGAACTGAAGGAGGCAAAAGAGAAATCGCTGGAACTGGTGTATTTTTGCCTCGACATTCCAACGCAGAAGCTGAGGAACGCCGAAAGCAGCCAGGTACTGAATATAGAGAACATTTAGATTTGGTATAATGAGTTAAATCAAATCATGAGTTTCTCTCTTTTGATTCACAGCGTGTTCAACGGTGTTGGTTCCTGCAAAAGTAATGAAAGCTTTGAATCTTAAGCTTGACGACATTTGCAATAATCCCCATTTTGAACCCGTCGACGGTGGACGATTCAATTCAGACAACGGTAAACTTAAAAACTCTTTACCACCAATTACAATCAAAATAGTTTCAAGAAAAATAGACAATGATTAGATGTATTTTTGTTGTGGTGATGATTTGGTAGATGTTCTATTGAGGATGCAAACCAACCATGGTGGAAATTATCAAAAACGAAACACCCGTCGAGAGCCATCAACGGACCAGGAAATCAAGCTTCCCCAAGAATGGATTTATTGAAATGATTTAAGAGTTGCGGAATTTTATGAAATTTAGTAAGTTGAAGTTAGATGGGAGAAAAATAAAAAGAATAAGAATTTTGGCATTCTAATGTGGACGAGAATTGCTAGGGATAGCTAGCGACTATAATGTACACATCAAGATTTTTTGTTCTTTGTTGGGTGAGGGATTATGGTCAGTCACTCATAGTTATGATCAAGAGTGGATGGGAAAATAAGTGTATTTTTCATCTCTTATTGTGTCAATAAATTGTTATATATTCTATAAACAACAATATTGGGTATAGGC

mRNA sequence

ATGGAGAGTGGAAGTAGCTGTAGTCAAGTTTCTAGTCGTGGAAGTCCAAAAGCTAATTCTAAGGCTCAATCTCCTCCGCCTTCAAGGGATTTGTTGCATGCGGTTGCAGAGGAAGTTGCGAGGATGCGAATCAATGAGAGCCATGGGGGGTTTCTTCATCAAAACAGAGGAACATCTCAAGTCTTTGTTCCGGTGAAAAACCCGACGACTGGTACCGGATTCTACCTGAAGTTGCATGGTCCGCAACGACAGAACTTGACTGTTGATGAGCAGATAAATTCTCATGAGATGGTTCAAAATGGAATGAGTGACTACAACAGATTGTCCTCATCGGCGTGGCTTCCACCGCCACAGGGCTCTAGAACTGAAGGAGGCAAAAGAGAAATCGCTGGAACTGGTGTATTTTTGCCTCGACATTCCAACGCAGAAGCTGAGGAACGCCGAAAGCAGCCAGCGTGTTCAACGGTGTTGGTTCCTGCAAAAGTAATGAAAGCTTTGAATCTTAAGCTTGACGACATTTGCAATAATCCCCATTTTGAACCCGTCGACGGTGGACGATTCAATTCAGACAACGATGTTCTATTGAGGATGCAAACCAACCATGGTGGAAATTATCAAAAACGAAACACCCGTCGAGAGCCATCAACGGACCAGGAAATCAAGCTTCCCCAAGAATGGATTTATTGA

Coding sequence (CDS)

ATGGAGAGTGGAAGTAGCTGTAGTCAAGTTTCTAGTCGTGGAAGTCCAAAAGCTAATTCTAAGGCTCAATCTCCTCCGCCTTCAAGGGATTTGTTGCATGCGGTTGCAGAGGAAGTTGCGAGGATGCGAATCAATGAGAGCCATGGGGGGTTTCTTCATCAAAACAGAGGAACATCTCAAGTCTTTGTTCCGGTGAAAAACCCGACGACTGGTACCGGATTCTACCTGAAGTTGCATGGTCCGCAACGACAGAACTTGACTGTTGATGAGCAGATAAATTCTCATGAGATGGTTCAAAATGGAATGAGTGACTACAACAGATTGTCCTCATCGGCGTGGCTTCCACCGCCACAGGGCTCTAGAACTGAAGGAGGCAAAAGAGAAATCGCTGGAACTGGTGTATTTTTGCCTCGACATTCCAACGCAGAAGCTGAGGAACGCCGAAAGCAGCCAGCGTGTTCAACGGTGTTGGTTCCTGCAAAAGTAATGAAAGCTTTGAATCTTAAGCTTGACGACATTTGCAATAATCCCCATTTTGAACCCGTCGACGGTGGACGATTCAATTCAGACAACGATGTTCTATTGAGGATGCAAACCAACCATGGTGGAAATTATCAAAAACGAAACACCCGTCGAGAGCCATCAACGGACCAGGAAATCAAGCTTCCCCAAGAATGGATTTATTGA

Protein sequence

MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQVFVPVKNPTTGTGFYLKLHGPQRQNLTVDEQINSHEMVQNGMSDYNRLSSSAWLPPPQGSRTEGGKREIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLDDICNNPHFEPVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY*

Homology

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BLAST of CsaV3_3G034420.1 vs. NCBI nr
Match: XP_004137922.2 (uncharacterized protein LOC101222308 isoform X1 [Cucumis sativus])

HSP 1 Score: 466.1 bits (1198), Expect = 1.8e-127
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ 60
           MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ
Sbjct: 82  MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ 141

Query: 61  VFVPVKNPTTGTGFYLKLHGPQRQNLTVDEQINSHEMVQNGMSDYNRLSSSAWLPPPQGS 120
           VFVPVKNPTTGTGFYLKLHGPQRQNLTVDEQINSHEMVQNGMSDYNRLSSSAWLPPPQGS
Sbjct: 142 VFVPVKNPTTGTGFYLKLHGPQRQNLTVDEQINSHEMVQNGMSDYNRLSSSAWLPPPQGS 201

Query: 121 RTEGGKREIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLDDICNNPHFE 180
           RTEGGKREIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLDDICNNPHFE
Sbjct: 202 RTEGGKREIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLDDICNNPHFE 261

Query: 181 PVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY 229
           PVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY
Sbjct: 262 PVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY 309

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BLAST of CsaV3_3G034420.1 vs. NCBI nr
Match: KAE8650993.1 (hypothetical protein Csa_002592 [Cucumis sativus])

HSP 1 Score: 466.1 bits (1198), Expect = 1.8e-127
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ 60
           MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ
Sbjct: 1   MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ 60

Query: 61  VFVPVKNPTTGTGFYLKLHGPQRQNLTVDEQINSHEMVQNGMSDYNRLSSSAWLPPPQGS 120
           VFVPVKNPTTGTGFYLKLHGPQRQNLTVDEQINSHEMVQNGMSDYNRLSSSAWLPPPQGS
Sbjct: 61  VFVPVKNPTTGTGFYLKLHGPQRQNLTVDEQINSHEMVQNGMSDYNRLSSSAWLPPPQGS 120

Query: 121 RTEGGKREIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLDDICNNPHFE 180
           RTEGGKREIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLDDICNNPHFE
Sbjct: 121 RTEGGKREIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLDDICNNPHFE 180

Query: 181 PVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY 229
           PVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY
Sbjct: 181 PVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY 228

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BLAST of CsaV3_3G034420.1 vs. NCBI nr
Match: XP_031738657.1 (uncharacterized protein LOC101222308 isoform X2 [Cucumis sativus])

HSP 1 Score: 457.2 bits (1175), Expect = 8.2e-125
Identity = 226/228 (99.12%), Postives = 226/228 (99.12%), Query Frame = 0


Query: 1   MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ 60
           MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ
Sbjct: 82  MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ 141

Query: 61  VFVPVKNPTTGTGFYLKLHGPQRQNLTVDEQINSHEMVQNGMSDYNRLSSSAWLPPPQGS 120
           VFVPVKNPTTGTGFYLKLHGP  QNLTVDEQINSHEMVQNGMSDYNRLSSSAWLPPPQGS
Sbjct: 142 VFVPVKNPTTGTGFYLKLHGP--QNLTVDEQINSHEMVQNGMSDYNRLSSSAWLPPPQGS 201

Query: 121 RTEGGKREIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLDDICNNPHFE 180
           RTEGGKREIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLDDICNNPHFE
Sbjct: 202 RTEGGKREIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLDDICNNPHFE 261

Query: 181 PVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY 229
           PVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY
Sbjct: 262 PVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY 307

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BLAST of CsaV3_3G034420.1 vs. NCBI nr
Match: XP_008442493.1 (PREDICTED: uncharacterized protein LOC103486346 [Cucumis melo])

HSP 1 Score: 384.0 bits (985), Expect = 8.9e-103
Identity = 199/238 (83.61%), Postives = 206/238 (86.55%), Query Frame = 0


Query: 1   MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ 60
           ME GSSCSQVSSRGSPK NSKAQSPPP RDLLHAVAEEVARMR+NESHGG LHQNRG SQ
Sbjct: 82  MECGSSCSQVSSRGSPKGNSKAQSPPPIRDLLHAVAEEVARMRVNESHGGVLHQNRGISQ 141

Query: 61  VFVPVKNPTTGTGFYLKLHGPQRQNLTVDEQINS---------HEMVQNGMSDYNRLSSS 120
           V VPVKNPTTGTGFY KLHGPQRQNLTVDEQINS         H+MVQNG+SDYN LSS 
Sbjct: 142 VSVPVKNPTTGTGFYQKLHGPQRQNLTVDEQINSRTRNQQQQTHQMVQNGISDYNGLSSL 201

Query: 121 AWLPPPQGSRTEGGKREIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLD 180
             LP PQG RTEGGKRE AGTGVFLPRH+NAEA+ERRK PACSTVLVPAKVMKALNLKLD
Sbjct: 202 ERLPLPQGYRTEGGKREFAGTGVFLPRHTNAEADERRK-PACSTVLVPAKVMKALNLKLD 261

Query: 181 DIC-NNPHFEPVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY 229
           DIC NNPH EPVDGGR NSDNDVLLR+Q N  GN+QKRN RRE STDQEIKLPQEWIY
Sbjct: 262 DICNNNPHLEPVDGGRLNSDNDVLLRLQINRDGNHQKRNHRRETSTDQEIKLPQEWIY 318

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BLAST of CsaV3_3G034420.1 vs. NCBI nr
Match: KAA0044131.1 (uncharacterized protein E6C27_scaffold236G004840 [Cucumis melo var. makuwa] >TYK25007.1 uncharacterized protein E5676_scaffold352G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 384.0 bits (985), Expect = 8.9e-103
Identity = 199/238 (83.61%), Postives = 206/238 (86.55%), Query Frame = 0


Query: 1   MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ 60
           ME GSSCSQVSSRGSPK NSKAQSPPP RDLLHAVAEEVARMR+NESHGG LHQNRG SQ
Sbjct: 114 MECGSSCSQVSSRGSPKGNSKAQSPPPIRDLLHAVAEEVARMRVNESHGGVLHQNRGISQ 173

Query: 61  VFVPVKNPTTGTGFYLKLHGPQRQNLTVDEQINS---------HEMVQNGMSDYNRLSSS 120
           V VPVKNPTTGTGFY KLHGPQRQNLTVDEQINS         H+MVQNG+SDYN LSS 
Sbjct: 174 VSVPVKNPTTGTGFYQKLHGPQRQNLTVDEQINSRTRNQQQQTHQMVQNGISDYNGLSSL 233

Query: 121 AWLPPPQGSRTEGGKREIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLD 180
             LP PQG RTEGGKRE AGTGVFLPRH+NAEA+ERRK PACSTVLVPAKVMKALNLKLD
Sbjct: 234 ERLPLPQGYRTEGGKREFAGTGVFLPRHTNAEADERRK-PACSTVLVPAKVMKALNLKLD 293

Query: 181 DIC-NNPHFEPVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY 229
           DIC NNPH EPVDGGR NSDNDVLLR+Q N  GN+QKRN RRE STDQEIKLPQEWIY
Sbjct: 294 DICNNNPHLEPVDGGRLNSDNDVLLRLQINRDGNHQKRNHRRETSTDQEIKLPQEWIY 350

[Close]

BLAST of CsaV3_3G034420.1 vs. ExPASy TrEMBL
Match: A0A0A0LA16 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733250 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 8.6e-128
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 1   MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ 60
           MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ
Sbjct: 82  MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ 141

Query: 61  VFVPVKNPTTGTGFYLKLHGPQRQNLTVDEQINSHEMVQNGMSDYNRLSSSAWLPPPQGS 120
           VFVPVKNPTTGTGFYLKLHGPQRQNLTVDEQINSHEMVQNGMSDYNRLSSSAWLPPPQGS
Sbjct: 142 VFVPVKNPTTGTGFYLKLHGPQRQNLTVDEQINSHEMVQNGMSDYNRLSSSAWLPPPQGS 201

Query: 121 RTEGGKREIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLDDICNNPHFE 180
           RTEGGKREIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLDDICNNPHFE
Sbjct: 202 RTEGGKREIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLDDICNNPHFE 261

Query: 181 PVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY 229
           PVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY
Sbjct: 262 PVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY 309

[Close]

BLAST of CsaV3_3G034420.1 vs. ExPASy TrEMBL
Match: A0A5A7TRC0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001250 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.3e-103
Identity = 199/238 (83.61%), Postives = 206/238 (86.55%), Query Frame = 0


Query: 1   MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ 60
           ME GSSCSQVSSRGSPK NSKAQSPPP RDLLHAVAEEVARMR+NESHGG LHQNRG SQ
Sbjct: 114 MECGSSCSQVSSRGSPKGNSKAQSPPPIRDLLHAVAEEVARMRVNESHGGVLHQNRGISQ 173

Query: 61  VFVPVKNPTTGTGFYLKLHGPQRQNLTVDEQINS---------HEMVQNGMSDYNRLSSS 120
           V VPVKNPTTGTGFY KLHGPQRQNLTVDEQINS         H+MVQNG+SDYN LSS 
Sbjct: 174 VSVPVKNPTTGTGFYQKLHGPQRQNLTVDEQINSRTRNQQQQTHQMVQNGISDYNGLSSL 233

Query: 121 AWLPPPQGSRTEGGKREIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLD 180
             LP PQG RTEGGKRE AGTGVFLPRH+NAEA+ERRK PACSTVLVPAKVMKALNLKLD
Sbjct: 234 ERLPLPQGYRTEGGKREFAGTGVFLPRHTNAEADERRK-PACSTVLVPAKVMKALNLKLD 293

Query: 181 DIC-NNPHFEPVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY 229
           DIC NNPH EPVDGGR NSDNDVLLR+Q N  GN+QKRN RRE STDQEIKLPQEWIY
Sbjct: 294 DICNNNPHLEPVDGGRLNSDNDVLLRLQINRDGNHQKRNHRRETSTDQEIKLPQEWIY 350

[Close]

BLAST of CsaV3_3G034420.1 vs. ExPASy TrEMBL
Match: A0A1S3B6G2 (uncharacterized protein LOC103486346 OS=Cucumis melo OX=3656 GN=LOC103486346 PE=4 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 4.3e-103
Identity = 199/238 (83.61%), Postives = 206/238 (86.55%), Query Frame = 0


Query: 1   MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ 60
           ME GSSCSQVSSRGSPK NSKAQSPPP RDLLHAVAEEVARMR+NESHGG LHQNRG SQ
Sbjct: 82  MECGSSCSQVSSRGSPKGNSKAQSPPPIRDLLHAVAEEVARMRVNESHGGVLHQNRGISQ 141

Query: 61  VFVPVKNPTTGTGFYLKLHGPQRQNLTVDEQINS---------HEMVQNGMSDYNRLSSS 120
           V VPVKNPTTGTGFY KLHGPQRQNLTVDEQINS         H+MVQNG+SDYN LSS 
Sbjct: 142 VSVPVKNPTTGTGFYQKLHGPQRQNLTVDEQINSRTRNQQQQTHQMVQNGISDYNGLSSL 201

Query: 121 AWLPPPQGSRTEGGKREIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLD 180
             LP PQG RTEGGKRE AGTGVFLPRH+NAEA+ERRK PACSTVLVPAKVMKALNLKLD
Sbjct: 202 ERLPLPQGYRTEGGKREFAGTGVFLPRHTNAEADERRK-PACSTVLVPAKVMKALNLKLD 261

Query: 181 DIC-NNPHFEPVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY 229
           DIC NNPH EPVDGGR NSDNDVLLR+Q N  GN+QKRN RRE STDQEIKLPQEWIY
Sbjct: 262 DICNNNPHLEPVDGGRLNSDNDVLLRLQINRDGNHQKRNHRRETSTDQEIKLPQEWIY 318

[Close]

BLAST of CsaV3_3G034420.1 vs. ExPASy TrEMBL
Match: A0A5A7TLP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001260 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 4.0e-77
Identity = 162/255 (63.53%), Postives = 181/255 (70.98%), Query Frame = 0


Query: 1   MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ 60
           M SGS CSQVSSRGSPK N K QSPP + DLLHA AEEVARMRI ESH G LH NRG SQ
Sbjct: 117 MGSGSGCSQVSSRGSPKGNCKTQSPPATWDLLHAAAEEVARMRIKESH-GVLHHNRGPSQ 176

Query: 61  VFVPVKNPTTGTGFYLKLHG-----------PQRQNLTVDEQINS---------HEMVQN 120
           V VPVK  TTGTGFY +L              QRQNLTV EQINS         H+MV N
Sbjct: 177 VSVPVKTSTTGTGFYQQLQALQFQHLQQKEIMQRQNLTVGEQINSPAGYQHQHIHQMVPN 236

Query: 121 GMSDYNRLSSSAWLPPPQGS-------RTEGGKREIAGTGVFLPRHSNAEAEERRKQPAC 180
           G+      SS AWLPPPQGS        T+GGKRE AGTGVFLPRH+  ++E+RRK PAC
Sbjct: 237 GVRGCRGFSSPAWLPPPQGSGMRTLFLGTQGGKRECAGTGVFLPRHTTTQSEQRRK-PAC 296

Query: 181 STVLVPAKVMKALNLKLDDICNNPHFEPVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRRE 229
           STVLVPA+VM+ALNL  DDIC+ PH +PV GGRF+S NDVLLR++ N GGNYQK N+RR+
Sbjct: 297 STVLVPARVMQALNLNYDDICSQPHLQPVAGGRFDSKNDVLLRLEMNRGGNYQKHNSRRQ 356

[Close]

BLAST of CsaV3_3G034420.1 vs. ExPASy TrEMBL
Match: A0A1S3B5T2 (uncharacterized protein LOC103486345 OS=Cucumis melo OX=3656 GN=LOC103486345 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 4.0e-77
Identity = 162/255 (63.53%), Postives = 181/255 (70.98%), Query Frame = 0


Query: 1   MESGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRGTSQ 60
           M SGS CSQVSSRGSPK N K QSPP + DLLHA AEEVARMRI ESH G LH NRG SQ
Sbjct: 117 MGSGSGCSQVSSRGSPKGNCKTQSPPATWDLLHAAAEEVARMRIKESH-GVLHHNRGPSQ 176

Query: 61  VFVPVKNPTTGTGFYLKLHG-----------PQRQNLTVDEQINS---------HEMVQN 120
           V VPVK  TTGTGFY +L              QRQNLTV EQINS         H+MV N
Sbjct: 177 VSVPVKTSTTGTGFYQQLQALQFQHLQQKEIMQRQNLTVGEQINSPAGYQHQHIHQMVPN 236

Query: 121 GMSDYNRLSSSAWLPPPQGS-------RTEGGKREIAGTGVFLPRHSNAEAEERRKQPAC 180
           G+      SS AWLPPPQGS        T+GGKRE AGTGVFLPRH+  ++E+RRK PAC
Sbjct: 237 GVRGCRGFSSPAWLPPPQGSGMRTLFLGTQGGKRECAGTGVFLPRHTTTQSEQRRK-PAC 296

Query: 181 STVLVPAKVMKALNLKLDDICNNPHFEPVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRRE 229
           STVLVPA+VM+ALNL  DDIC+ PH +PV GGRF+S NDVLLR++ N GGNYQK N+RR+
Sbjct: 297 STVLVPARVMQALNLNYDDICSQPHLQPVAGGRFDSKNDVLLRLEMNRGGNYQKHNSRRQ 356

[Close]

BLAST of CsaV3_3G034420.1 vs. TAIR 10
Match: AT3G54000.1 (CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-11
Identity = 84/259 (32.43%), Postives = 114/259 (44.02%), Query Frame = 0


Query: 3   SGSSCSQVSSRGSPKANSKAQSPPPSRDLLHAVAEEVARMRINESHGGFLHQNRG----T 62
           +G+ C  ++ R +   NS+  S       L+  AE   RM IN+      H  RG     
Sbjct: 115 AGTGCCCLNQRFNQNLNSRVSSWD-----LYCAAE---RMSINDEP---YHSGRGLLGSP 174

Query: 63  SQVFVPVKN-PTTGTGFYLKLHGPQRQNLTV-------DEQINSH--EMVQ-------NG 122
           +++   VKN    GTG+Y      Q Q L          +Q+  H  ++V+       NG
Sbjct: 175 AKLSATVKNHSNNGTGYYNNHQSLQYQKLQAIQFQQLKQQQLMKHRRQLVRQNRGVRVNG 234

Query: 123 MSDYN--RLSSSAW---LPPPQGSRT-----EGGKREIAGTGVFLPRHSN-AEAEERRKQ 182
             +     LSSSAW    P     R        GKR   GTGVFLPR  N     E R++
Sbjct: 235 NKNVGPVDLSSSAWSNQFPRRDVMRAVFIGDHTGKRGSTGTGVFLPRSVNHTSRTETREK 294

Query: 183 PACSTVLVPAKVMKALNLKLDDICNNPHFEPVDGGRFNSDNDVLLRMQTNHGG-NYQKRN 229
           P  STVLVPA++ + LNL L         EPV      + NDV  R ++N+GG + Q   
Sbjct: 295 PTISTVLVPARLAQVLNLNLG--------EPVRSTA--TLNDVSWRQRSNNGGFSSQMVG 352

[Close]

BLAST of CsaV3_3G034420.1 vs. TAIR 10
Match: AT5G59050.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 7.4e-07
Identity = 45/146 (30.82%), Postives = 61/146 (41.78%), Query Frame = 0


Query: 93  NSHEMVQNGMSDYNRLSSSAWLPPPQGSRTEGGKREIAGTGVFLPRHSNAEAEERRKQPA 152
           N H + QN      R    A      GSRT  G     GTGVFLPR  +    E RK+  
Sbjct: 176 NYHHLHQN---QRPRSGVKAVFVDGSGSRTGSG-----GTGVFLPR-GHGTVVESRKKSG 235

Query: 153 CSTVLVPAKVMKALNLKLDDICNNPHFE----PVDGGRFNSDNDVLLRMQTN------HG 212
           CSTV++PA+V++AL +  D +     F     P       S N+  ++   N        
Sbjct: 236 CSTVIIPARVVEALKVHFDKLGVPSTFSSDIPPFHDALLVSMNNKKIKSNKNTSLSRVQS 295

Query: 213 GNYQKRNTRREPSTDQEIKLPQEWIY 229
           G+  +     E   +    LPQEW Y
Sbjct: 296 GSPYEMEMSAESHQEPPADLPQEWTY 312

[Close]

BLAST of CsaV3_3G034420.1 vs. TAIR 10
Match: AT4G02830.1 (unknown protein; Has 74 Blast hits to 74 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 3.1e-05
Identity = 34/102 (33.33%), Postives = 46/102 (45.10%), Query Frame = 0


Query: 127 REIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLDDICNNPHFEPVDGGR 186
           R  +GTGVFLP      +    K+ ACS VL+P +V++ALNL + +  N  H  P    R
Sbjct: 93  RTTSGTGVFLPA---TASHPPTKKTACSPVLLPTRVVQALNLNIHN--NGIHISPRPEIR 152

Query: 187 FNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY 229
            N        + T        +     P    E  LP+EWIY
Sbjct: 153 ENDSKKKSEMLATT-----PIKIEAENPIDSPEKLLPEEWIY 184

[Close]

BLAST of CsaV3_3G034420.1 vs. TAIR 10
Match: AT4G02830.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown. )

HSP 1 Score: 46.6 bits (109), Expect = 3.1e-05
Identity = 34/102 (33.33%), Postives = 46/102 (45.10%), Query Frame = 0


Query: 127 REIAGTGVFLPRHSNAEAEERRKQPACSTVLVPAKVMKALNLKLDDICNNPHFEPVDGGR 186
           R  +GTGVFLP      +    K+ ACS VL+P +V++ALNL + +  N  H  P    R
Sbjct: 91  RTTSGTGVFLPA---TASHPPTKKTACSPVLLPTRVVQALNLNIHN--NGIHISPRPEIR 150

Query: 187 FNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIKLPQEWIY 229
            N        + T        +     P    E  LP+EWIY
Sbjct: 151 ENDSKKKSEMLATT-----PIKIEAENPIDSPEKLLPEEWIY 182

[Close]

BLAST of CsaV3_3G034420.1 vs. TAIR 10
Match: AT2G39870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55690.1); Has 73 Blast hits to 71 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 1.2e-04
Identity = 40/127 (31.50%), Postives = 57/127 (44.88%), Query Frame = 0


Query: 105 YNRLSSSAWLPPPQGSRTEGGKREIAGTGVFLP-RHSNAEAEERRKQPACSTVLVPAKVM 164
           Y R ++  WLPP Q +     KR  AGTGVFLP R+ +A   +  K P  +  ++  KV 
Sbjct: 221 YVRRNNPTWLPPQQAAAPL--KRPSAGTGVFLPRRYPSAAPSDSLKTPVNTPAMLQPKV- 280

Query: 165 KALNLKLDDICN--NPHFEPVDGGRFNSDNDVLLRMQTNHGGNYQKRNTRREPSTDQEIK 224
           K  NL  D+  N   P     D     + + VL R      GN++  +            
Sbjct: 281 KPQNLNFDEFTNIVGPRRSQFDYECMLARSTVLARQ-----GNFRAVSGG---------G 330

Query: 225 LPQEWIY 229
           LPQ+W+Y
Sbjct: 341 LPQDWMY 330

The following BLAST results are available for this feature:

BLAST of CsaV3_3G034420.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137922.2	1.8e-127	100.00	uncharacterized protein LOC101222308 isoform X1 [Cucumis sativus]	[more]
KAE8650993.1	1.8e-127	100.00	hypothetical protein Csa_002592 [Cucumis sativus]	[more]
XP_031738657.1	8.2e-125	99.12	uncharacterized protein LOC101222308 isoform X2 [Cucumis sativus]	[more]
XP_008442493.1	8.9e-103	83.61	PREDICTED: uncharacterized protein LOC103486346 [Cucumis melo]	[more]
KAA0044131.1	8.9e-103	83.61	uncharacterized protein E6C27_scaffold236G004840 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of CsaV3_3G034420.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G034420.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA16	8.6e-128	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733250 PE=4 SV=1	[more]
A0A5A7TRC0	4.3e-103	83.61	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B6G2	4.3e-103	83.61	uncharacterized protein LOC103486346 OS=Cucumis melo OX=3656 GN=LOC103486346 PE=...	[more]
A0A5A7TLP2	4.0e-77	63.53	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B5T2	4.0e-77	63.53	uncharacterized protein LOC103486345 OS=Cucumis melo OX=3656 GN=LOC103486345 PE=...	[more]

BLAST of CsaV3_3G034420.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54000.1	1.3e-11	32.43	CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPr...	[more]
AT5G59050.1	7.4e-07	30.82	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02830.1	3.1e-05	33.33	unknown protein; Has 74 Blast hits to 74 proteins in 13 species: Archae - 0; Bac...	[more]
AT4G02830.2	3.1e-05	33.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G39870.1	1.2e-04	31.50	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR33356	TIP41-LIKE PROTEIN	coord: 6..228
None	No IPR available	PANTHER	PTHR33356:SF5	TIP41-LIKE PROTEIN	coord: 6..228

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_3G034420	CsaV3_3G034420	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G034420.1.exon5	CsaV3_3G034420.1.exon5	exon
CsaV3_3G034420.1.exon4	CsaV3_3G034420.1.exon4	exon
CsaV3_3G034420.1.exon3	CsaV3_3G034420.1.exon3	exon
CsaV3_3G034420.1.exon2	CsaV3_3G034420.1.exon2	exon
CsaV3_3G034420.1.exon1	CsaV3_3G034420.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G034420.1.cds5	CsaV3_3G034420.1.cds5	CDS
CsaV3_3G034420.1.cds4	CsaV3_3G034420.1.cds4	CDS
CsaV3_3G034420.1.cds3	CsaV3_3G034420.1.cds3	CDS
CsaV3_3G034420.1.cds2	CsaV3_3G034420.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G034420.1	CsaV3_3G034420.1-protein	polypeptide