CsaV3_3G032070.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G032070.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 27701101 .. 27701481 (+)
Sequence length	381
RNA-Seq Expression	CsaV3_3G032070.1
Synteny	CsaV3_3G032070.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCCTCTCCGCCGGTCACCGCCATTTCTTCTACAGCCAAAGTGGCAGCGCCACCCTGCTGTTCAGAAACAGAAGCATCAGCCCCAGATCGATCTCCGTCCTCTGCCTCCATAACCAAGATCCTTCAGATCCTACAGATTGTTCAGAAGAAAAAACGAAGAAGAAAAGCCAAGAAAGGAAAGAGATGGTTCACGGGTTTGTCCAAAGATTTGAGAAGATGGGAATTCAACTGAAGGAGAAATTGAGTCCACAGAGAAAAGGGGATTGGAAGGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTATATATATCTCAGAAGATTGTTTGTGCTTATTTTCTTTGGATGACAATGCCTAAACCACTGTGGTAG

mRNA sequence

ATGGCAGCCCTCTCCGCCGGTCACCGCCATTTCTTCTACAGCCAAAGTGGCAGCGCCACCCTGCTGTTCAGAAACAGAAGCATCAGCCCCAGATCGATCTCCGTCCTCTGCCTCCATAACCAAGATCCTTCAGATCCTACAGATTGTTCAGAAGAAAAAACGAAGAAGAAAAGCCAAGAAAGGAAAGAGATGGTTCACGGGTTTGTCCAAAGATTTGAGAAGATGGGAATTCAACTGAAGGAGAAATTGAGTCCACAGAGAAAAGGGGATTGGAAGGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTATATATATCTCAGAAGATTGTTTGTGCTTATTTTCTTTGGATGACAATGCCTAAACCACTGTGGTAG

Coding sequence (CDS)

ATGGCAGCCCTCTCCGCCGGTCACCGCCATTTCTTCTACAGCCAAAGTGGCAGCGCCACCCTGCTGTTCAGAAACAGAAGCATCAGCCCCAGATCGATCTCCGTCCTCTGCCTCCATAACCAAGATCCTTCAGATCCTACAGATTGTTCAGAAGAAAAAACGAAGAAGAAAAGCCAAGAAAGGAAAGAGATGGTTCACGGGTTTGTCCAAAGATTTGAGAAGATGGGAATTCAACTGAAGGAGAAATTGAGTCCACAGAGAAAAGGGGATTGGAAGGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTATATATATCTCAGAAGATTGTTTGTGCTTATTTTCTTTGGATGACAATGCCTAAACCACTGTGGTAG

Protein sequence

MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQERKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMTMPKPLW*

Homology

[Close]

BLAST of CsaV3_3G032070.1 vs. NCBI nr
Match: KGN58582.1 (hypothetical protein Csa_001602 [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 3.4e-64
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60
           MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE
Sbjct: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60

Query: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120
           RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT
Sbjct: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120

Query: 121 MPKPLW 127
           MPKPLW
Sbjct: 121 MPKPLW 126

[Close]

BLAST of CsaV3_3G032070.1 vs. NCBI nr
Match: KAA0048367.1 (putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa] >TYK04067.1 putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa])

HSP 1 Score: 242.7 bits (618), Expect = 1.8e-60
Identity = 119/126 (94.44%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60
           MAALSAGHRHFFYS SGSA + FRNRSISPRSI+VLCLHNQDPSDPTDCS+EKTKKKSQE
Sbjct: 1   MAALSAGHRHFFYSLSGSAIVQFRNRSISPRSIAVLCLHNQDPSDPTDCSDEKTKKKSQE 60

Query: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120
           RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWM+
Sbjct: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMS 120

Query: 121 MPKPLW 127
           MPKPLW
Sbjct: 121 MPKPLW 126

[Close]

BLAST of CsaV3_3G032070.1 vs. NCBI nr
Match: KAG6606884.1 (hypothetical protein SDJN03_00226, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036590.1 hypothetical protein SDJN02_00209, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.9 bits (494), Expect = 4.2e-46
Identity = 100/126 (79.37%), Postives = 113/126 (89.68%), Query Frame = 0


Query: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60
           MAALSAGHR+FF    GSA + FRNRSISPRSI +LCLHNQ+PSDP+D SEEK KK+ QE
Sbjct: 1   MAALSAGHRYFF----GSAAVHFRNRSISPRSIVLLCLHNQNPSDPSDPSEEKPKKE-QE 60

Query: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120
           +K+ + GFVQRFEKMGI+LKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYF+WM+
Sbjct: 61  KKQSIPGFVQRFEKMGIELKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFVWMS 120

Query: 121 MPKPLW 127
           MPK +W
Sbjct: 121 MPKQVW 121

[Close]

BLAST of CsaV3_3G032070.1 vs. NCBI nr
Match: KAG6581569.1 (hypothetical protein SDJN03_21571, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018076.1 hypothetical protein SDJN02_19942, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175.3 bits (443), Expect = 3.5e-40
Identity = 92/126 (73.02%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60
           MAALSAGHRHFF        + F NRSISPR I +LC HN +  DP+D SEEKT KK QE
Sbjct: 1   MAALSAGHRHFF------PAVQFGNRSISPRPIVLLCCHNHN-QDPSDSSEEKT-KKDQE 60

Query: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120
            K+MV GF+QR++KMG++LKEKLSPQRKGDWKD+TLMSLSFAVYVYISQKIVCAYFLWM+
Sbjct: 61  GKQMVPGFIQRYKKMGMELKEKLSPQRKGDWKDVTLMSLSFAVYVYISQKIVCAYFLWMS 118

Query: 121 MPKPLW 127
           MPK LW
Sbjct: 121 MPKQLW 118

[Close]

BLAST of CsaV3_3G032070.1 vs. NCBI nr
Match: XP_022152649.1 (uncharacterized protein LOC111020315 [Momordica charantia])

HSP 1 Score: 157.1 bits (396), Expect = 9.8e-35
Identity = 82/127 (64.57%), Postives = 100/127 (78.74%), Query Frame = 0


Query: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60
           MAALSAGHRHFF  + G+A    R R  SP+SI +LC H+QDP      SEE +K+  + 
Sbjct: 1   MAALSAGHRHFF--RRGAAAQQLRTRRSSPKSIVLLCRHSQDP------SEENSKEGEER 60

Query: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120
           +++ + GFV+RFEKMG++LKEKLSPQRKGDWKD+ LMSLSFAVYVYISQKIVCAYF+WM+
Sbjct: 61  KQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYISQKIVCAYFVWMS 119

Query: 121 MPK-PLW 127
           MPK  LW
Sbjct: 121 MPKQQLW 119

[Close]

BLAST of CsaV3_3G032070.1 vs. ExPASy TrEMBL
Match: A0A0A0LD14 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G690300 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 1.7e-64
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60
           MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE
Sbjct: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60

Query: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120
           RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT
Sbjct: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120

Query: 121 MPKPLW 127
           MPKPLW
Sbjct: 121 MPKPLW 126

[Close]

BLAST of CsaV3_3G032070.1 vs. ExPASy TrEMBL
Match: A0A5D3BX35 (Putative RNA/RNP complex-1-interacting phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00020 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 8.6e-61
Identity = 119/126 (94.44%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60
           MAALSAGHRHFFYS SGSA + FRNRSISPRSI+VLCLHNQDPSDPTDCS+EKTKKKSQE
Sbjct: 1   MAALSAGHRHFFYSLSGSAIVQFRNRSISPRSIAVLCLHNQDPSDPTDCSDEKTKKKSQE 60

Query: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120
           RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWM+
Sbjct: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMS 120

Query: 121 MPKPLW 127
           MPKPLW
Sbjct: 121 MPKPLW 126

[Close]

BLAST of CsaV3_3G032070.1 vs. ExPASy TrEMBL
Match: A0A6J1DGN1 (uncharacterized protein LOC111020315 OS=Momordica charantia OX=3673 GN=LOC111020315 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.7e-35
Identity = 82/127 (64.57%), Postives = 100/127 (78.74%), Query Frame = 0


Query: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60
           MAALSAGHRHFF  + G+A    R R  SP+SI +LC H+QDP      SEE +K+  + 
Sbjct: 1   MAALSAGHRHFF--RRGAAAQQLRTRRSSPKSIVLLCRHSQDP------SEENSKEGEER 60

Query: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120
           +++ + GFV+RFEKMG++LKEKLSPQRKGDWKD+ LMSLSFAVYVYISQKIVCAYF+WM+
Sbjct: 61  KQQKIGGFVERFEKMGMELKEKLSPQRKGDWKDVALMSLSFAVYVYISQKIVCAYFVWMS 119

Query: 121 MPK-PLW 127
           MPK  LW
Sbjct: 121 MPKQQLW 119

[Close]

BLAST of CsaV3_3G032070.1 vs. ExPASy TrEMBL
Match: A0A660KVF0 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_010795 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.7e-21
Identity = 65/126 (51.59%), Postives = 81/126 (64.29%), Query Frame = 0


Query: 1   MAALSAGHRHFFYSQSGSATLLFRNRSISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQE 60
           MAALS GH   F+ +    T     +S SP ++ + C        P D S  +TKK+  +
Sbjct: 1   MAALSIGHS--FHRE--PITYQQLRKSSSPTTLILSCCQRH---KPVDSSNPRTKKEKSK 60

Query: 61  RKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMT 120
           RK ++      FEK G  L+E LSP++KGDWKDLTLMSLSFAVYVYISQK+VCAYF WM+
Sbjct: 61  RKLLLQRSSVGFEKFGKILRENLSPKQKGDWKDLTLMSLSFAVYVYISQKLVCAYFAWMS 119

Query: 121 MPKPLW 127
           MPK LW
Sbjct: 121 MPKQLW 119

[Close]

BLAST of CsaV3_3G032070.1 vs. ExPASy TrEMBL
Match: A0A7J9DSK9 (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_013044 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.7e-21
Identity = 65/128 (50.78%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 1   MAALSAGHRHFFYSQSGSATLLFRNRS-ISPRSISVLCLHNQDPSDPTDCSEEKTKKKSQ 60
           MAAL   H +F Y    S+      RS   PR + V   HN D S     S  KTKK+ +
Sbjct: 1   MAALCVNHPNFRYKNCCSSLQRRETRSRHRPRFLVVSSSHNNDESLERSTSSSKTKKEDK 60

Query: 61  ERKEMVHGFV-QRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLW 120
           E+++++ G V    +K+GI LKEK+SPQRKGDWKD+ LMSLSFAVYVY+SQK+VCAY  W
Sbjct: 61  EKRQLLFGRVLGNVQKLGIGLKEKMSPQRKGDWKDVMLMSLSFAVYVYMSQKLVCAYCAW 120

Query: 121 MTMPKPLW 127
           M+M K  W
Sbjct: 121 MSMLKQSW 128

[Close]

BLAST of CsaV3_3G032070.1 vs. TAIR 10
Match: AT3G52070.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 8.9e-10
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 53  KTKKKSQERKEMVHGFVQRFEKMGIQLKEKLSPQ-RKGDWKDLTLMSLSFAVYVYISQKI 112
           + +K  +E + ++   ++R      ++ + L P+ +KGD KDL LMSLSFAVYVYISQ +
Sbjct: 38  RKQKLPEENEGVIQRTLRRMISEAGKIGKNLKPEKKKGDVKDLMLMSLSFAVYVYISQLL 97

Query: 113 VCAYFLW--MTMPKPLW 127
           VCAYF W  ++ PK  W
Sbjct: 98  VCAYFSWQHLSFPKSSW 114

[Close]

BLAST of CsaV3_3G032070.1 vs. TAIR 10
Match: AT3G52070.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 4.4e-09
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 53  KTKKKSQERKEMVHGFVQRFEKMGIQLKEKLSPQ-RKGDWKDLTLMSLSFAVYVYISQKI 112
           + +K  +E + ++   ++R      ++ + L P+ +KGD KDL LMSLSFAVYVYISQ +
Sbjct: 38  RKQKLPEENEGVIQRTLRRMISEAGKIGKNLKPEKKKGDVKDLMLMSLSFAVYVYISQLL 97

Query: 113 VCAYFLWMTMPKP 125
           VCAYF W  +  P
Sbjct: 98  VCAYFSWQHLSFP 110

The following BLAST results are available for this feature:

BLAST of CsaV3_3G032070.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58582.1	3.4e-64	100.00	hypothetical protein Csa_001602 [Cucumis sativus]	[more]
KAA0048367.1	1.8e-60	94.44	putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa] >T...	[more]
KAG6606884.1	4.2e-46	79.37	hypothetical protein SDJN03_00226, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6581569.1	3.5e-40	73.02	hypothetical protein SDJN03_21571, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022152649.1	9.8e-35	64.57	uncharacterized protein LOC111020315 [Momordica charantia]	[more]

BLAST of CsaV3_3G032070.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G032070.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD14	1.7e-64	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G690300 PE=4 SV=1	[more]
A0A5D3BX35	8.6e-61	94.44	Putative RNA/RNP complex-1-interacting phosphatase OS=Cucumis melo var. makuwa O...	[more]
A0A6J1DGN1	4.7e-35	64.57	uncharacterized protein LOC111020315 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A660KVF0	1.7e-21	51.59	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_010795 PE=4 SV=1	[more]
A0A7J9DSK9	1.7e-21	50.78	Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_013044 PE=4 SV=1	[more]

BLAST of CsaV3_3G032070.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52070.1	8.9e-10	44.16	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G52070.2	4.4e-09	43.84	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..62

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_3G032070	CsaV3_3G032070	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G032070.1.exon1	CsaV3_3G032070.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G032070.1.cds1	CsaV3_3G032070.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G032070.1	CsaV3_3G032070.1-protein	polypeptide