CsaV3_3G031150.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G031150.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 26942860 .. 26943138 (+)
Sequence length240
RNA-Seq ExpressionCsaV3_3G031150.1
SyntenyCsaV3_3G031150.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACTTCCATTTTGGTCCTGGGATGCACCCTCTCGCTTCCACTGTTTCAATGTGTTCTTCCAATTTTACATCATTTCCAGCTCTACAGGAACTGAATCCCAACTTACAAGCCTTCCCATTTGCGGGAGTGTTGAAATTAGCGTCCCATTCACACTTACGCTTTGTGGGTTTAATCCCATTTTGCGTCTTCTTCACACTTGAGGGTATGTTGGATTATACACGTATCGGTTGGTTATGTTCAGTTGGGAACCCAGAATGGGCTAAGCTACTCATATAA

mRNA sequence

ATGTACTTCCATTTTGGTCCTGGGATGCACCCTCTCGCTTCCACTGTTTCAATGTGTTCTTCCAATTTTACATCATTTCCAGCTCTACAGGAACTGAATCCCAACTTACAAGCCTTCCCATTTGCGGGAGTGTTGAAATTAGCGTCCCATTCACACTTACGCTTTGTGGGTTTAATCCCATTTTGCGTCTTCTTCACACTTGAGGTTGGGAACCCAGAATGGGCTAAGCTACTCATATAA

Coding sequence (CDS)

ATGTACTTCCATTTTGGTCCTGGGATGCACCCTCTCGCTTCCACTGTTTCAATGTGTTCTTCCAATTTTACATCATTTCCAGCTCTACAGGAACTGAATCCCAACTTACAAGCCTTCCCATTTGCGGGAGTGTTGAAATTAGCGTCCCATTCACACTTACGCTTTGTGGGTTTAATCCCATTTTGCGTCTTCTTCACACTTGAGGTTGGGAACCCAGAATGGGCTAAGCTACTCATATAA

Protein sequence

MYFHFGPGMHPLASTVSMCSSNFTSFPALQELNPNLQAFPFAGVLKLASHSHLRFVGLIPFCVFFTLEVGNPEWAKLLI*
Homology
[Close]
BLAST of CsaV3_3G031150.1 vs. NCBI nr
Match: KGN58483.1 (hypothetical protein Csa_001379 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MYFHFGPGMHPLASTVSMCSSNFTSFPALQELNPNLQAFPFAGVLKLASHSHLRFVGLIP 60
          MYFHFGPGMHPLASTVSMCSSNFTSFPALQELNPNLQAFPFAGVLKLASHSHLRFVGLIP
Sbjct: 1  MYFHFGPGMHPLASTVSMCSSNFTSFPALQELNPNLQAFPFAGVLKLASHSHLRFVGLIP 60

Query: 61 FCVFFTLEVGNPEWAKLLI 80
          FCVFFTLEVGNPEWAKLLI
Sbjct: 61 FCVFFTLEVGNPEWAKLLI 79

[Close]
BLAST of CsaV3_3G031150.1 vs. ExPASy TrEMBL
Match: A0A0A0L9I3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651690 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.6e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MYFHFGPGMHPLASTVSMCSSNFTSFPALQELNPNLQAFPFAGVLKLASHSHLRFVGLIP 60
          MYFHFGPGMHPLASTVSMCSSNFTSFPALQELNPNLQAFPFAGVLKLASHSHLRFVGLIP
Sbjct: 1  MYFHFGPGMHPLASTVSMCSSNFTSFPALQELNPNLQAFPFAGVLKLASHSHLRFVGLIP 60

Query: 61 FCVFFTLEVGNPEWAKLLI 80
          FCVFFTLEVGNPEWAKLLI
Sbjct: 61 FCVFFTLEVGNPEWAKLLI 79

The following BLAST results are available for this feature:
BLAST of CsaV3_3G031150.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58483.11.6e-38100.00hypothetical protein Csa_001379 [Cucumis sativus][more]
BLAST of CsaV3_3G031150.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G031150.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9I37.6e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651690 PE=4 SV=1[more]
BLAST of CsaV3_3G031150.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G031150CsaV3_3G031150gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G031150.1.exon1CsaV3_3G031150.1.exon1exon
CsaV3_3G031150.1.exon2CsaV3_3G031150.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G031150.1.cds1CsaV3_3G031150.1.cds1CDS
CsaV3_3G031150.1.cds2CsaV3_3G031150.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G031150.1CsaV3_3G031150.1-proteinpolypeptide