CsaV3_3G027330.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G027330.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic
Location	chr3: 23664368 .. 23664627 (-)
Sequence length	258
RNA-Seq Expression	CsaV3_3G027330.1
Synteny	CsaV3_3G027330.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTCATTAGTAAAAAACTTCGCCAACTTTTTAATTGGCAAAATAATAATAACTTTACGAGAGAGTCGAAGCCCGCCAAGGAGAATTGGACATTTTTTTTTATAGGGGATCAGGGTCGTTTTCCTTGGAAATGGAAAATTTGCCCACCAGATTTTATCAATTTGCAAATTCTTCCTCATTTAGTTAAAAGAATGAAATCGGCTAATATTATGACAATACTAGGTAGCAAAGATATCATTGTGGGAGAAGTTGATCTTTAA

mRNA sequence

TTCATTAGTAAAAAACTTCGCCAACTTTTTAATTGGCAAAATAATAATAACTTTACGAGAGAGTCGAAGCCCGCCAAGGAGAATTGGACATTTTTTTTTATAGGGGATCAGGGTCGTTTTCCTTGGAAATGGAAAATTTGCCCACCAGATTTTATCAATTTGCAAATTCTTCCTCATTTAGTTAAAAGAATGAAATCGGCTAATATTATGACAATACTAGGTAGCAAAGATATCATTGTGGGAGAAGTTGATCTTTAA

Coding sequence (CDS)

TTCATTAGTAAAAAACTTCGCCAACTTTTTAATTGGCAAAATAATAATAACTTTACGAGAGAGTCGAAGCCCGCCAAGGAGAATTGGACATTTTTTTTTATAGGGGATCAGGGTCGTTTTCCTTGGAAATGGAAAATTTGCCCACCAGATTTTATCAATTTGCAAATTCTTCCTCATTTAGTTAAAAGAATGAAATCGGCTAATATTATGACAATACTAGGTAGCAAAGATATCATTGTGGGAGAAGTTGATCTTTAA

Protein sequence

FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHLVKRMKSANIMTILGSKDIIVGEVDL*

Homology

[Close]

BLAST of CsaV3_3G027330.1 vs. NCBI nr
Match: KGN58301.2 (hypothetical protein Csa_023862, partial [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 5.0e-43
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL 60
          FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL
Sbjct: 1  FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL 60

Query: 61 VKRMKSANIMTILGSKDIIVGEVDL 86
          VKRMKSANIMTILGSKDIIVGEVDL
Sbjct: 61 VKRMKSANIMTILGSKDIIVGEVDL 85

[Close]

BLAST of CsaV3_3G027330.1 vs. NCBI nr
Match: YP_009917221.1 (NADH-plastoquinone oxidoreductase subunit 7 [Ziziphus incurva] >QDP70467.1 NADH-plastoquinone oxidoreductase subunit 7 [Ziziphus incurva])

HSP 1 Score: 100.1 bits (248), Expect = 9.6e-18
Identity = 53/84 (63.10%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 1   FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL 60
           FISKK    F       + R   P K     F IGDQG FPW+WKI PP FINLQILPHL
Sbjct: 310 FISKKPSPTFELPKQELYVRVEAP-KGELGIFLIGDQGGFPWRWKIRPPGFINLQILPHL 369

Query: 61  VKRMKSANIMTILGSKDIIVGEVD 85
           VKRMK A+IMTILGS DII+GEVD
Sbjct: 370 VKRMKLADIMTILGSIDIIMGEVD 392

[Close]

BLAST of CsaV3_3G027330.1 vs. NCBI nr
Match: YP_009028025.1 (NADH dehydrogenase subunit 7 [Chrysobalanus icaco] >AHX80718.1 NADH dehydrogenase subunit 7 [Chrysobalanus icaco])

HSP 1 Score: 98.2 bits (243), Expect = 3.6e-17
Identity = 52/84 (61.90%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1   FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL 60
           FISKK    F       + R   P K     F IGDQ RFPW+WKI PP FINLQILP L
Sbjct: 310 FISKKTSPTFELPKQELYVRVEAP-KGELGIFLIGDQSRFPWRWKIRPPGFINLQILPQL 369

Query: 61  VKRMKSANIMTILGSKDIIVGEVD 85
           VKRMK A+IMTILGS DII+GEVD
Sbjct: 370 VKRMKLADIMTILGSIDIIMGEVD 392

[Close]

BLAST of CsaV3_3G027330.1 vs. NCBI nr
Match: AFU94914.1 (NdhH, partial [Chrysobalanus icaco])

HSP 1 Score: 98.2 bits (243), Expect = 3.6e-17
Identity = 52/84 (61.90%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1   FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL 60
           FISKK    F       + R   P K     F IGDQ RFPW+WKI PP FINLQILP L
Sbjct: 315 FISKKTSPTFELPKQELYVRVEAP-KGELGIFLIGDQSRFPWRWKIRPPGFINLQILPQL 374

Query: 61  VKRMKSANIMTILGSKDIIVGEVD 85
           VKRMK A+IMTILGS DII+GEVD
Sbjct: 375 VKRMKLADIMTILGSIDIIMGEVD 397

[Close]

BLAST of CsaV3_3G027330.1 vs. NCBI nr
Match: YP_009264746.1 (NADH dehydrogenase subunit 7 [Kostermanthus robustus] >ANJ19003.1 NADH dehydrogenase subunit 7 [Kostermanthus robustus])

HSP 1 Score: 97.8 bits (242), Expect = 4.8e-17
Identity = 52/84 (61.90%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1   FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL 60
           FISKK    F       + R   P K     F IGDQG FPW+WKI PP FINLQILP L
Sbjct: 310 FISKKTSPTFELPKQELYVRVEAP-KGELGIFLIGDQGGFPWRWKIRPPGFINLQILPQL 369

Query: 61  VKRMKSANIMTILGSKDIIVGEVD 85
           VKRMK A+IMTILGS DII+GEVD
Sbjct: 370 VKRMKLADIMTILGSIDIIMGEVD 392

[Close]

BLAST of CsaV3_3G027330.1 vs. ExPASy Swiss-Prot
Match: Q4VZL2 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhH PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-19
Identity = 52/84 (61.90%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1   FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL 60
           FISKK    F       + R   P K     F IGDQG FPW+WKI PP FINLQILP L
Sbjct: 310 FISKKPSPTFELAKQELYVRVEAP-KGELGIFLIGDQGGFPWRWKIRPPGFINLQILPQL 369

Query: 61  VKRMKSANIMTILGSKDIIVGEVD 85
           VKRMK A+IMTILGS DII+GEVD
Sbjct: 370 VKRMKLADIMTILGSIDIIMGEVD 392

[Close]

BLAST of CsaV3_3G027330.1 vs. ExPASy Swiss-Prot
Match: Q7YJS8 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Calycanthus floridus var. glaucus OX=212734 GN=ndhH PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.4e-19
Identity = 51/84 (60.71%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 1   FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL 60
           FISKK    F       + R   P K     F IGD   FPW+WKI PP FINLQILPHL
Sbjct: 310 FISKKPSPTFELSKQELYVRVEAP-KGELGIFLIGDNSVFPWRWKIRPPGFINLQILPHL 369

Query: 61  VKRMKSANIMTILGSKDIIVGEVD 85
           VKRMK A+IMTILGS DII+GEVD
Sbjct: 370 VKRMKLADIMTILGSIDIIMGEVD 392

[Close]

BLAST of CsaV3_3G027330.1 vs. ExPASy Swiss-Prot
Match: Q0G9Q6 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Daucus carota OX=4039 GN=ndhH PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-19
Identity = 51/84 (60.71%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1   FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL 60
           FISKK    F       + R   P K     F IGD+G FPW+WKI PP FINLQILP L
Sbjct: 310 FISKKPSPTFELSKQELYVRVEAP-KGELGIFLIGDKGIFPWRWKIRPPGFINLQILPQL 369

Query: 61  VKRMKSANIMTILGSKDIIVGEVD 85
           VKRMK A+IMTILGS DII+GEVD
Sbjct: 370 VKRMKLADIMTILGSIDIIMGEVD 392

[Close]

BLAST of CsaV3_3G027330.1 vs. ExPASy Swiss-Prot
Match: B1NWK5 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Manihot esculenta OX=3983 GN=ndhH PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-19
Identity = 51/84 (60.71%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 1   FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL 60
           FISKK    F       + R   P K     F IGDQ  FPW+WKI PP FINLQILP L
Sbjct: 310 FISKKTSPTFELPKQELYVRVEAP-KGELGIFLIGDQSGFPWRWKIRPPGFINLQILPEL 369

Query: 61  VKRMKSANIMTILGSKDIIVGEVD 85
           VKRMK A+IMTILGS DII+GEVD
Sbjct: 370 VKRMKLADIMTILGSIDIIMGEVD 392

[Close]

BLAST of CsaV3_3G027330.1 vs. ExPASy Swiss-Prot
Match: Q68RV0 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Panax ginseng OX=4054 GN=ndhH PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.1e-19
Identity = 51/84 (60.71%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1   FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL 60
           FISKK    F       + R   P K     F IGD+G FPW+WKI PP FINLQILP L
Sbjct: 310 FISKKPSPTFELSKQELYVRVEAP-KGELGIFLIGDRGVFPWRWKIRPPGFINLQILPQL 369

Query: 61  VKRMKSANIMTILGSKDIIVGEVD 85
           VKRMK A+IMTILGS DII+GEVD
Sbjct: 370 VKRMKLADIMTILGSIDIIMGEVD 392

[Close]

BLAST of CsaV3_3G027330.1 vs. ExPASy TrEMBL
Match: A0A7D0H346 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Ziziphus incurva OX=478038 GN=ndhH PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.6e-18
Identity = 53/84 (63.10%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 1   FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL 60
           FISKK    F       + R   P K     F IGDQG FPW+WKI PP FINLQILPHL
Sbjct: 310 FISKKPSPTFELPKQELYVRVEAP-KGELGIFLIGDQGGFPWRWKIRPPGFINLQILPHL 369

Query: 61  VKRMKSANIMTILGSKDIIVGEVD 85
           VKRMK A+IMTILGS DII+GEVD
Sbjct: 370 VKRMKLADIMTILGSIDIIMGEVD 392

[Close]

BLAST of CsaV3_3G027330.1 vs. ExPASy TrEMBL
Match: K4K701 (NdhH (Fragment) OS=Chrysobalanus icaco OX=22978 GN=ndhH PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.8e-17
Identity = 52/84 (61.90%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1   FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL 60
           FISKK    F       + R   P K     F IGDQ RFPW+WKI PP FINLQILP L
Sbjct: 315 FISKKTSPTFELPKQELYVRVEAP-KGELGIFLIGDQSRFPWRWKIRPPGFINLQILPQL 374

Query: 61  VKRMKSANIMTILGSKDIIVGEVD 85
           VKRMK A+IMTILGS DII+GEVD
Sbjct: 375 VKRMKLADIMTILGSIDIIMGEVD 397

[Close]

BLAST of CsaV3_3G027330.1 vs. ExPASy TrEMBL
Match: A0A023SZQ3 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Chrysobalanus icaco OX=22978 GN=ndhH PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.8e-17
Identity = 52/84 (61.90%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1   FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL 60
           FISKK    F       + R   P K     F IGDQ RFPW+WKI PP FINLQILP L
Sbjct: 310 FISKKTSPTFELPKQELYVRVEAP-KGELGIFLIGDQSRFPWRWKIRPPGFINLQILPQL 369

Query: 61  VKRMKSANIMTILGSKDIIVGEVD 85
           VKRMK A+IMTILGS DII+GEVD
Sbjct: 370 VKRMKLADIMTILGSIDIIMGEVD 392

[Close]

BLAST of CsaV3_3G027330.1 vs. ExPASy TrEMBL
Match: A0A650BWD1 (NADH-quinone oxidoreductase subunit D OS=Platylobium obtusangulum OX=24964 GN=ndhH PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.3e-17
Identity = 52/84 (61.90%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1   FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL 60
           FISKKL   F       + R   P K     F IGDQ  FPW+WKI PP FINLQILP L
Sbjct: 310 FISKKLSPTFELPKQELYVRVEAP-KGELGIFLIGDQNSFPWRWKIRPPGFINLQILPQL 369

Query: 61  VKRMKSANIMTILGSKDIIVGEVD 85
           VKRMK A+IMTILGS DII+GEVD
Sbjct: 370 VKRMKLADIMTILGSIDIIMGEVD 392

[Close]

BLAST of CsaV3_3G027330.1 vs. ExPASy TrEMBL
Match: A0A191VTJ8 (NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Kostermanthus robustus OX=692125 GN=ndhH PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.3e-17
Identity = 52/84 (61.90%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 1   FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL 60
           FISKK    F       + R   P K     F IGDQG FPW+WKI PP FINLQILP L
Sbjct: 310 FISKKTSPTFELPKQELYVRVEAP-KGELGIFLIGDQGGFPWRWKIRPPGFINLQILPQL 369

Query: 61  VKRMKSANIMTILGSKDIIVGEVD 85
           VKRMK A+IMTILGS DII+GEVD
Sbjct: 370 VKRMKLADIMTILGSIDIIMGEVD 392

[Close]

BLAST of CsaV3_3G027330.1 vs. TAIR 10
Match: ATCG01110.1 (NAD(P)H dehydrogenase subunit H )

HSP 1 Score: 95.1 bits (235), Expect = 2.9e-20
Identity = 51/84 (60.71%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 1   FISKKLRQLFNWQNNNNFTRESKPAKENWTFFFIGDQGRFPWKWKICPPDFINLQILPHL 60
           FISKK    F       + R   P K     F IGDQ  FPW+WKI PP FINLQILP L
Sbjct: 310 FISKKPSPTFELSKQELYVRVEAP-KGELGIFLIGDQSGFPWRWKIRPPGFINLQILPEL 369

Query: 61  VKRMKSANIMTILGSKDIIVGEVD 85
           VKRMK A+IMTILGS DII+GEVD
Sbjct: 370 VKRMKLADIMTILGSIDIIMGEVD 392

The following BLAST results are available for this feature:

BLAST of CsaV3_3G027330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58301.2	5.0e-43	100.00	hypothetical protein Csa_023862, partial [Cucumis sativus]	[more]
YP_009917221.1	9.6e-18	63.10	NADH-plastoquinone oxidoreductase subunit 7 [Ziziphus incurva] >QDP70467.1 NADH-...	[more]
YP_009028025.1	3.6e-17	61.90	NADH dehydrogenase subunit 7 [Chrysobalanus icaco] >AHX80718.1 NADH dehydrogenas...	[more]
AFU94914.1	3.6e-17	61.90	NdhH, partial [Chrysobalanus icaco]	[more]
YP_009264746.1	4.8e-17	61.90	NADH dehydrogenase subunit 7 [Kostermanthus robustus] >ANJ19003.1 NADH dehydroge...	[more]

BLAST of CsaV3_3G027330.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZL2	1.1e-19	61.90	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Cucumis sativus OX=36...	[more]
Q7YJS8	2.4e-19	60.71	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Calycanthus floridus ...	[more]
Q0G9Q6	3.1e-19	60.71	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Daucus carota OX=4039...	[more]
B1NWK5	3.1e-19	60.71	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Manihot esculenta OX=...	[more]
Q68RV0	3.1e-19	60.71	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Panax ginseng OX=4054...	[more]

BLAST of CsaV3_3G027330.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7D0H346	4.6e-18	63.10	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Ziziphus incurva OX=4...	[more]
K4K701	1.8e-17	61.90	NdhH (Fragment) OS=Chrysobalanus icaco OX=22978 GN=ndhH PE=3 SV=1	[more]
A0A023SZQ3	1.8e-17	61.90	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Chrysobalanus icaco O...	[more]
A0A650BWD1	2.3e-17	61.90	NADH-quinone oxidoreductase subunit D OS=Platylobium obtusangulum OX=24964 GN=nd...	[more]
A0A191VTJ8	2.3e-17	61.90	NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Kostermanthus robustu...	[more]

BLAST of CsaV3_3G027330.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01110.1	2.9e-20	60.71	NAD(P)H dehydrogenase subunit H	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001135	NADH-quinone oxidoreductase, subunit D	PFAM	PF00346	Complex1_49kDa	coord: 24..84 e-value: 3.4E-11 score: 42.7
IPR029014	[NiFe]-hydrogenase, large subunit	GENE3D	1.10.645.10		coord: 4..85 e-value: 7.2E-10 score: 40.1
IPR029014	[NiFe]-hydrogenase, large subunit	SUPERFAMILY	56762	HydB/Nqo4-like	coord: 31..84
None	No IPR available	PANTHER	PTHR11993:SF39	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT H, CHLOROPLASTIC	coord: 4..77
IPR022885	NAD(P)H-quinone oxidoreductase subunit D/H	PANTHER	PTHR11993	NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT	coord: 4..77

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_3G027330	CsaV3_3G027330	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G027330.1.exon1	CsaV3_3G027330.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G027330.1.cds1	CsaV3_3G027330.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G027330.1	CsaV3_3G027330.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H
molecular_function	GO:0048038	quinone binding