CsaV3_3G026270.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G026270.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Auxin-responsive protein
Location	chr3: 22394478 .. 22395338 (+)
Sequence length	585
RNA-Seq Expression	CsaV3_3G026270.1
Synteny	CsaV3_3G026270.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATTCACATGTTGGTGTTGGAGAATCCCACCAAATCAGAAACCCGACCATCTCTATCTCTCTCTTTTTTTTAATTAAATCAAACACAAAGTCCCACTTTTGTTCCTCTTGTCTCCGACCGGCCGGCGACCACAATGCTATTCATTTTCCATATCTCATTATTATCCCCATTCCCCCATATAATTTCTCTTCCATCTATTTATATATATATATAAATATAACCTCTCATTTTGGTTCTTACACCATTAACAAAAACTCTCACATACACTTAATCTCATCTTCACAGAACAAAAATGGCATCCAATGGAGTTGAACTTGAAATCACTGAGCTCCGATTAGGGCTTCCGGGGAGTGGCGGTTGCCGTACCTCAAGTTCAAAAAATGAGAAGAAAAGGGTTTTCTGTGAGAGTAGCAGTACCAACAATGATGGCGGTGACCAACCATTCCCAAAAAGGAATCAGGTTGTTGGGTGGCCGCCGGTTTGCTCTCATCGAAGAAGGAGTAGTGGTAGCGGTAACAATAAAGATCTATCTGAAACCGAAACTCCCAAGATTTATGTGAAGATAAGTATGGATGGTGCTCCTTATCTTAGAAAAGTTGATCTTGGAAGTCATAAAGGGTATTCAGATCTTGTGGTGGCGATGGAGAATTTGTTCGGCTCGGCACTCGGATGCTCCGACTTTGTGCTGATCTACGAAGATCGGGATGGCGATTGGATGCTCGTCGGTGATGTACCATGGAATATGTTTGTTGAATCTTGCAAGAGATTGAGAATAATGAAGAGAACGGAAGTTAAAGGATTTGAGATTCATGTCCCATCTGAAACCCTAAGTAGTAGTTCTTCAAAGGAACTATAA

mRNA sequence

ATGGGGATTCACATAACAAAAATGGCATCCAATGGAGTTGAACTTGAAATCACTGAGCTCCGATTAGGGCTTCCGGGGAGTGGCGGTTGCCGTACCTCAAGTTCAAAAAATGAGAAGAAAAGGGTTTTCTGTGAGAGTAGCAGTACCAACAATGATGGCGGTGACCAACCATTCCCAAAAAGGAATCAGGTTGTTGGGTGGCCGCCGGTTTGCTCTCATCGAAGAAGGAGTAGTGGTAGCGGTAACAATAAAGATCTATCTGAAACCGAAACTCCCAAGATTTATGTGAAGATAAGTATGGATGGTGCTCCTTATCTTAGAAAAGTTGATCTTGGAAGTCATAAAGGGTATTCAGATCTTGTGGTGGCGATGGAGAATTTGTTCGGCTCGGCACTCGGATGCTCCGACTTTGTGCTGATCTACGAAGATCGGGATGGCGATTGGATGCTCGTCGGTGATGTACCATGGAATATGTTTGTTGAATCTTGCAAGAGATTGAGAATAATGAAGAGAACGGAAGTTAAAGGATTTGAGATTCATGTCCCATCTGAAACCCTAAGTAGTAGTTCTTCAAAGGAACTATAA

Coding sequence (CDS)

ATGGGGATTCACATAACAAAAATGGCATCCAATGGAGTTGAACTTGAAATCACTGAGCTCCGATTAGGGCTTCCGGGGAGTGGCGGTTGCCGTACCTCAAGTTCAAAAAATGAGAAGAAAAGGGTTTTCTGTGAGAGTAGCAGTACCAACAATGATGGCGGTGACCAACCATTCCCAAAAAGGAATCAGGTTGTTGGGTGGCCGCCGGTTTGCTCTCATCGAAGAAGGAGTAGTGGTAGCGGTAACAATAAAGATCTATCTGAAACCGAAACTCCCAAGATTTATGTGAAGATAAGTATGGATGGTGCTCCTTATCTTAGAAAAGTTGATCTTGGAAGTCATAAAGGGTATTCAGATCTTGTGGTGGCGATGGAGAATTTGTTCGGCTCGGCACTCGGATGCTCCGACTTTGTGCTGATCTACGAAGATCGGGATGGCGATTGGATGCTCGTCGGTGATGTACCATGGAATATGTTTGTTGAATCTTGCAAGAGATTGAGAATAATGAAGAGAACGGAAGTTAAAGGATTTGAGATTCATGTCCCATCTGAAACCCTAAGTAGTAGTTCTTCAAAGGAACTATAA

Protein sequence

MGIHITKMASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENLFGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLSSSSSKEL*

Homology

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BLAST of CsaV3_3G026270.1 vs. NCBI nr
Match: KAE8650746.1 (hypothetical protein Csa_017652 [Cucumis sativus])

HSP 1 Score: 401.0 bits (1029), Expect = 6.0e-108
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0


Query: 1   MGIHITKMASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPK 60
           MGIHITKMASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPK
Sbjct: 1   MGIHITKMASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPK 60

Query: 61  RNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDL 120
           RNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDL
Sbjct: 61  RNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDL 120

Query: 121 VVAMENLFGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIH 180
           VVAMENLFGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIH
Sbjct: 121 VVAMENLFGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIH 180

Query: 181 VPSETLSSSSSKEL 195
           VPSETLSSSSSKEL
Sbjct: 181 VPSETLSSSSSKEL 194

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BLAST of CsaV3_3G026270.1 vs. NCBI nr
Match: XP_004149851.2 (auxin-induced protein 22A [Cucumis sativus])

HSP 1 Score: 386.3 bits (991), Expect = 1.5e-103
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW 67
           MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW
Sbjct: 1   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW 60

Query: 68  PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL 127
           PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL
Sbjct: 61  PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL 120

Query: 128 FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS 187
           FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS
Sbjct: 121 FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS 180

Query: 188 SSSSKEL 195
           SSSSKEL
Sbjct: 181 SSSSKEL 187

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BLAST of CsaV3_3G026270.1 vs. NCBI nr
Match: XP_008447488.1 (PREDICTED: auxin-induced protein 22A-like [Cucumis melo] >KAA0050763.1 auxin-induced protein 22A-like [Cucumis melo var. makuwa] >TYK20440.1 auxin-induced protein 22A-like [Cucumis melo var. makuwa])

HSP 1 Score: 357.8 bits (917), Expect = 5.8e-95
Identity = 172/187 (91.98%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW 67
           MASNGVELEITELRLGLPGSG C TSSSKNEKKRVF ESSSTNNDGGD+ FPKRNQVVGW
Sbjct: 1   MASNGVELEITELRLGLPGSGSCHTSSSKNEKKRVFSESSSTNNDGGDRRFPKRNQVVGW 60

Query: 68  PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL 127
           PPVCSHRRR+SGS NNK LSETE PK+YVKI MDGAPYLRKVDLGSHKGYSDLVVAMENL
Sbjct: 61  PPVCSHRRRNSGSSNNKGLSETEAPKMYVKIGMDGAPYLRKVDLGSHKGYSDLVVAMENL 120

Query: 128 FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS 187
           FGSALGCSDFVLIYEDRDGDWML+GDVPWNMF+ESCKRLRIMKR+E KGFEIHVPSETLS
Sbjct: 121 FGSALGCSDFVLIYEDRDGDWMLLGDVPWNMFIESCKRLRIMKRSEAKGFEIHVPSETLS 180

Query: 188 SSSSKEL 195
           SSSSKEL
Sbjct: 181 SSSSKEL 187

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BLAST of CsaV3_3G026270.1 vs. NCBI nr
Match: XP_038875964.1 (auxin-induced protein 22C-like [Benincasa hispida])

HSP 1 Score: 324.7 bits (831), Expect = 5.4e-85
Identity = 163/187 (87.17%), Postives = 172/187 (91.98%), Query Frame = 0


Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW 67
           MASNGVELEITEL LGLPGSGG  T S KNEKKRVF E SSTN+D  D+ FPKRNQVVGW
Sbjct: 1   MASNGVELEITELTLGLPGSGGHHTPSPKNEKKRVFSE-SSTNDD--DRRFPKRNQVVGW 60

Query: 68  PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL 127
           PPVCSHRRRSSGSGN+KDL ET+T K+YVKISMDGAPYLRKVDLGS+K YSDLVVAMENL
Sbjct: 61  PPVCSHRRRSSGSGNDKDLYETKTSKMYVKISMDGAPYLRKVDLGSYKEYSDLVVAMENL 120

Query: 128 FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS 187
           FGSA+GCSDFVLIYEDRDGDWMLVGDVPW MFVESCKRLRIMKR+E KGFEIHVP+ETLS
Sbjct: 121 FGSAIGCSDFVLIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFEIHVPTETLS 180

Query: 188 SSSSKEL 195
           SSSSKEL
Sbjct: 181 SSSSKEL 184

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BLAST of CsaV3_3G026270.1 vs. NCBI nr
Match: XP_023525671.1 (auxin-induced protein 22A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.8 bits (678), Expect = 3.0e-67
Identity = 141/196 (71.94%), Postives = 160/196 (81.63%), Query Frame = 0


Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFC---------ESSSTNNDGGDQPF 67
           MASNG+ELEITELRLGLPGSG   TS+SK++ KRVF          E SST+ DG D+  
Sbjct: 1   MASNGLELEITELRLGLPGSG--HTSTSKHDNKRVFSEMNANEGGDERSSTDCDGADRRR 60

Query: 68  PKRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYS 127
            K+NQVVGWPPVCS+RRRS  +GN+KDLSET   K+YVK+SMDGAPYLRKVDLG HKGYS
Sbjct: 61  SKKNQVVGWPPVCSYRRRS--NGNDKDLSETS--KMYVKVSMDGAPYLRKVDLGMHKGYS 120

Query: 128 DLVVAMENLFGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFE 187
           DL +AMENLFG A+G SD+V IYEDRDGDWMLVGDVPW MFVESCKRLRIMKR+E KGFE
Sbjct: 121 DLGMAMENLFGCAIGSSDYVPIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFE 180

Query: 188 IHVPSETLSSSSSKEL 195
           I VP +T SSSS ++L
Sbjct: 181 IQVP-KTRSSSSPRKL 189

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BLAST of CsaV3_3G026270.1 vs. ExPASy Swiss-Prot
Match: P32293 (Auxin-induced protein 22A OS=Vigna radiata var. radiata OX=3916 GN=AUX22A PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.1e-47
Identity = 100/186 (53.76%), Postives = 123/186 (66.13%), Query Frame = 0


Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEK--KRVFCE------SSSTNNDGGDQPFP 67
           MA  G+ LEITELRLGLP +     ++   EK  KRVF E       +S++  GGD+   
Sbjct: 1   MAKEGLGLEITELRLGLPDAEHVAVANKNGEKKNKRVFSEIDDVGDENSSSGGGGDRKME 60

Query: 68  KRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSD 127
            +NQVVGWPPVCS+R+++         S  E  K+YVK+SMDGAP+LRK+DLG HKGYSD
Sbjct: 61  NKNQVVGWPPVCSYRKKN---------SVNEASKMYVKVSMDGAPFLRKMDLGMHKGYSD 120

Query: 128 LVVAMENLFG--------SALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKR 178
           L  A+E LFG          +   + V IYED+DGDWMLVGDVPW MF+ESCKRLRIMKR
Sbjct: 121 LAFALEKLFGCYGMVEALKNVENGEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKR 177

[Close]

BLAST of CsaV3_3G026270.1 vs. ExPASy Swiss-Prot
Match: O24541 (Auxin-induced protein 22C OS=Vigna radiata var. radiata OX=3916 GN=AUX22C PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.0e-46
Identity = 100/186 (53.76%), Postives = 125/186 (67.20%), Query Frame = 0


Query: 8   MASNGVELEITELRLGLPGSGG-CRTSSSKNE-KKRVFC----ESSSTNNDGGDQPFPKR 67
           M    + LEITELRLGLPG+GG   T   KN+ KKRVF     E+SS+  DG  +    +
Sbjct: 1   MEKEDLGLEITELRLGLPGAGGENNTDKDKNKNKKRVFSDIEGENSSSEEDGKKE---TK 60

Query: 68  NQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLV 127
           NQVVGWPPVCS+R++++             PK+YVK+SMDGAP+LRK+DL  HKGYSDL 
Sbjct: 61  NQVVGWPPVCSYRKKNT----------VNEPKLYVKVSMDGAPFLRKIDLAMHKGYSDLA 120

Query: 128 VAMENLFGSALGC--------SDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTE 180
            A++  FG    C        ++ V IYED+DGDWMLVGDVPW MF ESCKRLRIMKR++
Sbjct: 121 FALDKFFGCYGICEALKDAENAEHVPIYEDKDGDWMLVGDVPWEMFRESCKRLRIMKRSD 173

[Close]

BLAST of CsaV3_3G026270.1 vs. ExPASy Swiss-Prot
Match: P13088 (Auxin-induced protein AUX22 OS=Glycine max OX=3847 GN=AUX22 PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.3e-45
Identity = 99/186 (53.23%), Postives = 126/186 (67.74%), Query Frame = 0


Query: 8   MASNGVELEITELRLGLP-GSGGCRTSSSKNEKKRVFCE------SSSTNNDGGDQPF-P 67
           MA  G+ LEITELRLGLP         + KNEKKR F E        ++++ GGD+    
Sbjct: 1   MAKEGLGLEITELRLGLPDAEHQVSVVNKKNEKKRAFSEIDDGVGDENSSSGGGDRKMET 60

Query: 68  KRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSD 127
            ++QVVGWPPVCS+R+++S    N+  S     K+YVK+SMDGAP+LRK+DLG HKGYSD
Sbjct: 61  NKSQVVGWPPVCSYRKKNS---MNEGAS-----KMYVKVSMDGAPFLRKIDLGLHKGYSD 120

Query: 128 LVVAMENLFG--------SALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKR 178
           L +A++ LFG             S+ V IYED+DGDWMLVGDVPW MF+ESCKRLRIMK+
Sbjct: 121 LALALDKLFGCYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFMESCKRLRIMKK 178

[Close]

BLAST of CsaV3_3G026270.1 vs. ExPASy Swiss-Prot
Match: P49680 (Auxin-induced protein IAA6 OS=Pisum sativum OX=3888 GN=IAA6 PE=2 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-43
Identity = 98/185 (52.97%), Postives = 121/185 (65.41%), Query Frame = 0


Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCE---SSSTNNDGGD-QPFPKRNQ 67
           MA  G+ LEITELRLGL     C     KNEKKR+F E       N   GD +   K+NQ
Sbjct: 1   MAREGLGLEITELRLGL----SC-GEPKKNEKKRMFSEIDGGVEENGGSGDRKSVDKKNQ 60

Query: 68  VVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVA 127
           VVGWPPVCS+R+++   G+          K+Y+K+SMDGAPYLRK+DL  HKGY +L +A
Sbjct: 61  VVGWPPVCSYRKKNMNEGS----------KMYMKVSMDGAPYLRKIDLCLHKGYLELALA 120

Query: 128 MENLFG---------SALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEV 180
           +E LF           A  C + V IYED+DGDWMLVGDVPW MF+ESCKRLRIMKR++ 
Sbjct: 121 LEKLFDCCGIEEALKDAENC-EHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDA 169

[Close]

BLAST of CsaV3_3G026270.1 vs. ExPASy Swiss-Prot
Match: O24409 (Auxin-responsive protein IAA19 OS=Arabidopsis thaliana OX=3702 GN=IAA19 PE=1 SV=2)

HSP 1 Score: 173.7 bits (439), Expect = 2.0e-42
Identity = 101/197 (51.27%), Postives = 125/197 (63.45%), Query Frame = 0


Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCE----SSSTNND---------GG 67
           M   G+ LEITELRLGLPG    R  + K  KKR F E    SS +N+D         GG
Sbjct: 1   MEKEGLGLEITELRLGLPG----RDVAEKMMKKRAFTEMNMTSSGSNSDQCESGVVSSGG 60

Query: 68  ------DQPFPKRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRK 127
                 D P  K +QVVGWPPVCS+R+++S     K+ S T+    YVK+SMDG PYLRK
Sbjct: 61  DAEKVNDSPAAK-SQVVGWPPVCSYRKKNS----CKEASTTKVGLGYVKVSMDGVPYLRK 120

Query: 128 VDLGSHKGYSDLVVAMENLFG-SALGCS-------DFVLIYEDRDGDWMLVGDVPWNMFV 178
           +DLGS +GY DL  A++ LFG   +G +       ++V IYED+DGDWML GDVPW MF+
Sbjct: 121 MDLGSSQGYDDLAFALDKLFGFRGIGVALKDGDNCEYVTIYEDKDGDWMLAGDVPWGMFL 180

[Close]

BLAST of CsaV3_3G026270.1 vs. ExPASy TrEMBL
Match: A0A0A0L852 (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_3G516540 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 7.4e-104
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW 67
           MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW
Sbjct: 1   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW 60

Query: 68  PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL 127
           PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL
Sbjct: 61  PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL 120

Query: 128 FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS 187
           FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS
Sbjct: 121 FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS 180

Query: 188 SSSSKEL 195
           SSSSKEL
Sbjct: 181 SSSSKEL 187

[Close]

BLAST of CsaV3_3G026270.1 vs. ExPASy TrEMBL
Match: A0A5D3DAE6 (Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00030 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.8e-95
Identity = 172/187 (91.98%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW 67
           MASNGVELEITELRLGLPGSG C TSSSKNEKKRVF ESSSTNNDGGD+ FPKRNQVVGW
Sbjct: 1   MASNGVELEITELRLGLPGSGSCHTSSSKNEKKRVFSESSSTNNDGGDRRFPKRNQVVGW 60

Query: 68  PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL 127
           PPVCSHRRR+SGS NNK LSETE PK+YVKI MDGAPYLRKVDLGSHKGYSDLVVAMENL
Sbjct: 61  PPVCSHRRRNSGSSNNKGLSETEAPKMYVKIGMDGAPYLRKVDLGSHKGYSDLVVAMENL 120

Query: 128 FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS 187
           FGSALGCSDFVLIYEDRDGDWML+GDVPWNMF+ESCKRLRIMKR+E KGFEIHVPSETLS
Sbjct: 121 FGSALGCSDFVLIYEDRDGDWMLLGDVPWNMFIESCKRLRIMKRSEAKGFEIHVPSETLS 180

Query: 188 SSSSKEL 195
           SSSSKEL
Sbjct: 181 SSSSKEL 187

[Close]

BLAST of CsaV3_3G026270.1 vs. ExPASy TrEMBL
Match: A0A1S3BI60 (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103489925 PE=3 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.8e-95
Identity = 172/187 (91.98%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQPFPKRNQVVGW 67
           MASNGVELEITELRLGLPGSG C TSSSKNEKKRVF ESSSTNNDGGD+ FPKRNQVVGW
Sbjct: 1   MASNGVELEITELRLGLPGSGSCHTSSSKNEKKRVFSESSSTNNDGGDRRFPKRNQVVGW 60

Query: 68  PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL 127
           PPVCSHRRR+SGS NNK LSETE PK+YVKI MDGAPYLRKVDLGSHKGYSDLVVAMENL
Sbjct: 61  PPVCSHRRRNSGSSNNKGLSETEAPKMYVKIGMDGAPYLRKVDLGSHKGYSDLVVAMENL 120

Query: 128 FGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFEIHVPSETLS 187
           FGSALGCSDFVLIYEDRDGDWML+GDVPWNMF+ESCKRLRIMKR+E KGFEIHVPSETLS
Sbjct: 121 FGSALGCSDFVLIYEDRDGDWMLLGDVPWNMFIESCKRLRIMKRSEAKGFEIHVPSETLS 180

Query: 188 SSSSKEL 195
           SSSSKEL
Sbjct: 181 SSSSKEL 187

[Close]

BLAST of CsaV3_3G026270.1 vs. ExPASy TrEMBL
Match: A0A6J1GBF5 (Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111452638 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.6e-66
Identity = 140/196 (71.43%), Postives = 158/196 (80.61%), Query Frame = 0


Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFC---------ESSSTNNDGGDQPF 67
           MASNG+ELEITELRLGLPGSG   TSSSK++ KRVF          E SS + DGGD+  
Sbjct: 1   MASNGLELEITELRLGLPGSG--HTSSSKHDNKRVFSEMNGNEGGDERSSNDCDGGDRRC 60

Query: 68  PKRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYS 127
            K+ QVVGWPPVCS+RRRS  +GN+KDLS  ET K+YVK+SMDGAPYLRKVDLG HKGYS
Sbjct: 61  SKKTQVVGWPPVCSYRRRS--NGNDKDLS--ETLKMYVKVSMDGAPYLRKVDLGMHKGYS 120

Query: 128 DLVVAMENLFGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFE 187
           DL +AMENLFG A+G SD+V IYEDRDGDWMLVGDVPW MFVESCKRLRIMKR+E KGFE
Sbjct: 121 DLGMAMENLFGCAIGSSDYVPIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFE 180

Query: 188 IHVPSETLSSSSSKEL 195
           I VP +T S SS ++L
Sbjct: 181 IQVP-KTRSCSSPRKL 189

[Close]

BLAST of CsaV3_3G026270.1 vs. ExPASy TrEMBL
Match: A0A6J1KBS9 (Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111492883 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.7e-66
Identity = 139/196 (70.92%), Postives = 159/196 (81.12%), Query Frame = 0


Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFC---------ESSSTNNDGGDQPF 67
           MASNG+ELEITELRLGLPGS    TSSSK++ KRVF          E SS + DGGD+ +
Sbjct: 1   MASNGLELEITELRLGLPGSR--HTSSSKHDNKRVFSEMNGNEGGDERSSNDCDGGDRRY 60

Query: 68  PKRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYS 127
            K+NQVVGWPPVCS+RRRS  +GN+KDLS  +T K+YVK+SMDGAPYLRKVDLG HKGYS
Sbjct: 61  SKKNQVVGWPPVCSYRRRS--NGNDKDLS--KTLKMYVKVSMDGAPYLRKVDLGMHKGYS 120

Query: 128 DLVVAMENLFGSALGCSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKGFE 187
           DL +AMENLF  A+G SD+V IYEDRDGDWMLVGDVPW MFVESCKRLRIMKR+E KGFE
Sbjct: 121 DLGMAMENLFSCAIGSSDYVPIYEDRDGDWMLVGDVPWKMFVESCKRLRIMKRSEAKGFE 180

Query: 188 IHVPSETLSSSSSKEL 195
           I VP +T SSSS ++L
Sbjct: 181 IQVP-KTRSSSSPRKL 189

[Close]

BLAST of CsaV3_3G026270.1 vs. TAIR 10
Match: AT3G15540.1 (indole-3-acetic acid inducible 19 )

HSP 1 Score: 173.7 bits (439), Expect = 1.4e-43
Identity = 101/197 (51.27%), Postives = 125/197 (63.45%), Query Frame = 0


Query: 8   MASNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCE----SSSTNND---------GG 67
           M   G+ LEITELRLGLPG    R  + K  KKR F E    SS +N+D         GG
Sbjct: 1   MEKEGLGLEITELRLGLPG----RDVAEKMMKKRAFTEMNMTSSGSNSDQCESGVVSSGG 60

Query: 68  ------DQPFPKRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRK 127
                 D P  K +QVVGWPPVCS+R+++S     K+ S T+    YVK+SMDG PYLRK
Sbjct: 61  DAEKVNDSPAAK-SQVVGWPPVCSYRKKNS----CKEASTTKVGLGYVKVSMDGVPYLRK 120

Query: 128 VDLGSHKGYSDLVVAMENLFG-SALGCS-------DFVLIYEDRDGDWMLVGDVPWNMFV 178
           +DLGS +GY DL  A++ LFG   +G +       ++V IYED+DGDWML GDVPW MF+
Sbjct: 121 MDLGSSQGYDDLAFALDKLFGFRGIGVALKDGDNCEYVTIYEDKDGDWMLAGDVPWGMFL 180

[Close]

BLAST of CsaV3_3G026270.1 vs. TAIR 10
Match: AT1G52830.1 (indole-3-acetic acid 6 )

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-40
Identity = 92/191 (48.17%), Postives = 120/191 (62.83%), Query Frame = 0


Query: 8   MASNGVELEITELRLGLPGSGGCRTS--SSKNEKKRVFCE-----SSSTNNDGG------ 67
           MA  G+ LEITELRLGLPG      S   S  +KKRV  +     +  T N+        
Sbjct: 1   MAKEGLALEITELRLGLPGDNYSEISVCGSSKKKKRVLSDMMTSSALDTENENSVVSSVE 60

Query: 68  DQPFP-KRNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGS 127
           D+  P  ++Q VGWPPVCS+RR+     NN++ S+      YVK+SMDG PY+RK+DLGS
Sbjct: 61  DESLPVVKSQAVGWPPVCSYRRKK----NNEEASKAIG---YVKVSMDGVPYMRKIDLGS 120

Query: 128 HKGYSDLVVAMENLFGS-ALGCS------DFVLIYEDRDGDWMLVGDVPWNMFVESCKRL 178
              Y +LV  +ENLFG   +G +      ++++IYED+D DWMLVGDVPW MF ESCKRL
Sbjct: 121 SNSYINLVTVLENLFGCLGIGVAKEGKKCEYIIIYEDKDRDWMLVGDVPWQMFKESCKRL 180

[Close]

BLAST of CsaV3_3G026270.1 vs. TAIR 10
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 161.0 bits (406), Expect = 9.7e-40
Identity = 92/185 (49.73%), Postives = 116/185 (62.70%), Query Frame = 0


Query: 13  VELEITELRLGLPGSGGC-----RTSSSKNEKKRVF-------CESSSTNNDGGDQPFPK 72
           V L+ TELRLGLPG+        R S   N  KRV         ESSS   +      P+
Sbjct: 5   VNLKETELRLGLPGTDNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSP---PR 64

Query: 73  RNQVVGWPPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDL 132
           + Q+VGWPPV S+R+ +  S  N+  SE E   IYVK+SMDGAPYLRK+DL  +KGYS+L
Sbjct: 65  KAQIVGWPPVRSYRKNNIQSKKNE--SEHEGQGIYVKVSMDGAPYLRKIDLSCYKGYSEL 124

Query: 133 VVAMENLFGSALG---------CSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKR 177
           + A+E +F  ++G          SDFV  YED+DGDWML+GDVPW MF+ +CKRLRIMK 
Sbjct: 125 LKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRIMKG 184

[Close]

BLAST of CsaV3_3G026270.1 vs. TAIR 10
Match: AT5G43700.1 (AUX/IAA transcriptional regulator family protein )

HSP 1 Score: 154.8 bits (390), Expect = 6.9e-38
Identity = 87/176 (49.43%), Postives = 112/176 (63.64%), Query Frame = 0


Query: 13  VELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDG---GDQPFPKRNQVVGWPP 72
           V L+ TELRLGLPG+    T S     KRV  E++    +     +   P + Q+VGWPP
Sbjct: 11  VNLKATELRLGLPGTE--ETVSCGKSNKRVLPEATEKEIESTGKTETASPPKAQIVGWPP 70

Query: 73  VCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENLFG 132
           V S+R+ +  +      SE+E    YVK+SMDGAPYLRK+DL  +K Y +L+ ++EN+F 
Sbjct: 71  VRSYRKNNVQTKK----SESEGQGNYVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFK 130

Query: 133 SALG---------CSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTEVKG 177
            ++G          SDFV  YED+DGDWMLVGDVPW MFV SCKRLRIMK +EVKG
Sbjct: 131 FSVGEYFEREGYKGSDFVPTYEDKDGDWMLVGDVPWEMFVSSCKRLRIMKGSEVKG 180

[Close]

BLAST of CsaV3_3G026270.1 vs. TAIR 10
Match: AT4G14560.1 (indole-3-acetic acid inducible )

HSP 1 Score: 149.8 bits (377), Expect = 2.2e-36
Identity = 83/175 (47.43%), Postives = 111/175 (63.43%), Query Frame = 0


Query: 10  SNGVELEITELRLGLPGSGGCRTSSSKNEKKRVFCESSSTNNDGGDQ--PFPKRNQVVGW 69
           +NG+ L+ TELRLGLPG+        + E   V   +   NND  ++  P P + Q+VGW
Sbjct: 4   TNGLNLKDTELRLGLPGA----QEEQQLELSCVRSNNKRKNNDSTEESAPPPAKTQIVGW 63

Query: 70  PPVCSHRRRSSGSGNNKDLSETETPKIYVKISMDGAPYLRKVDLGSHKGYSDLVVAMENL 129
           PPV S+R+    + NNK++S       YVK+SMDGAPYLRK+DL  +K Y +L+ A+EN+
Sbjct: 64  PPVRSNRK----NNNNKNVS-------YVKVSMDGAPYLRKIDLKMYKNYPELLKALENM 123

Query: 130 FGSALG---------CSDFVLIYEDRDGDWMLVGDVPWNMFVESCKRLRIMKRTE 174
           F   +G          S FV  YED+DGDWMLVGDVPW+MF  SC++LRIMK +E
Sbjct: 124 FKFTVGEYSEREGYKGSGFVPTYEDKDGDWMLVGDVPWDMFSSSCQKLRIMKGSE 163

The following BLAST results are available for this feature:

BLAST of CsaV3_3G026270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650746.1	6.0e-108	100.00	hypothetical protein Csa_017652 [Cucumis sativus]	[more]
XP_004149851.2	1.5e-103	100.00	auxin-induced protein 22A [Cucumis sativus]	[more]
XP_008447488.1	5.8e-95	91.98	PREDICTED: auxin-induced protein 22A-like [Cucumis melo] >KAA0050763.1 auxin-ind...	[more]
XP_038875964.1	5.4e-85	87.17	auxin-induced protein 22C-like [Benincasa hispida]	[more]
XP_023525671.1	3.0e-67	71.94	auxin-induced protein 22A-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_3G026270.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P32293	2.1e-47	53.76	Auxin-induced protein 22A OS=Vigna radiata var. radiata OX=3916 GN=AUX22A PE=2 S...	[more]
O24541	3.0e-46	53.76	Auxin-induced protein 22C OS=Vigna radiata var. radiata OX=3916 GN=AUX22C PE=2 S...	[more]
P13088	3.3e-45	53.23	Auxin-induced protein AUX22 OS=Glycine max OX=3847 GN=AUX22 PE=2 SV=1	[more]
P49680	1.1e-43	52.97	Auxin-induced protein IAA6 OS=Pisum sativum OX=3888 GN=IAA6 PE=2 SV=1	[more]
O24409	2.0e-42	51.27	Auxin-responsive protein IAA19 OS=Arabidopsis thaliana OX=3702 GN=IAA19 PE=1 SV=...	[more]

BLAST of CsaV3_3G026270.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L852	7.4e-104	100.00	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_3G516540 PE=3 SV=1	[more]
A0A5D3DAE6	2.8e-95	91.98	Auxin-responsive protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BI60	2.8e-95	91.98	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103489925 PE=3 SV=1	[more]
A0A6J1GBF5	1.6e-66	71.43	Auxin-responsive protein OS=Cucurbita moschata OX=3662 GN=LOC111452638 PE=3 SV=1	[more]
A0A6J1KBS9	2.7e-66	70.92	Auxin-responsive protein OS=Cucurbita maxima OX=3661 GN=LOC111492883 PE=3 SV=1	[more]

BLAST of CsaV3_3G026270.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15540.1	1.4e-43	51.27	indole-3-acetic acid inducible 19	[more]
AT1G52830.1	1.1e-40	48.17	indole-3-acetic acid 6	[more]
AT1G04240.1	9.7e-40	49.73	AUX/IAA transcriptional regulator family protein	[more]
AT5G43700.1	6.9e-38	49.43	AUX/IAA transcriptional regulator family protein	[more]
AT4G14560.1	2.2e-36	47.43	indole-3-acetic acid inducible	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 44..130 e-value: 4.4E-21 score: 75.8 coord: 132..176 e-value: 1.3E-23 score: 84.2
None	No IPR available	GENE3D	3.10.20.90		coord: 87..184 e-value: 2.1E-35 score: 122.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..88
None	No IPR available	PANTHER	PTHR31734:SF87	AUXIN-RESPONSIVE PROTEIN IAA6	coord: 11..177
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 86..170
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	AUXIN-RESPONSIVE PROTEIN IAA17	coord: 11..177
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 93..184 score: 25.9105

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_3G026270	CsaV3_3G026270	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G026270.1.exon1	CsaV3_3G026270.1.exon1	exon
CsaV3_3G026270.1.exon2	CsaV3_3G026270.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G026270.1.cds1	CsaV3_3G026270.1.cds1	CDS
CsaV3_3G026270.1.cds2	CsaV3_3G026270.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G026270.1	CsaV3_3G026270.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding