|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. CTTTCTTTTAGGTGTCACTCAGTCCTCACTTCCTTCCGTTCCGCCTCGGCCTCTCCCTCGCGTTGCCTTGCTTTTGCCTTCGCCTCTCCCTCATGCAACCTCCGGCATCTCCTCCTCCGTCTCAGCTCAGGCATGCACAACTGTTTGCCTCCACCTCTCCCTCACGCAACCTCCACATCTCCTCCGGCGTCTCAGCTCTTCAACGTCTCCTCCTTTGTCAAAGCTCTTTGGCGTCTCCTTCTCCATCTCAGATCCGTTTCGTCAGAACCCAAGACCCGTCCGTTTTGTCCAAACCCGAGACGGTGAGACCCGTCCGTTCCGTCTGTCTTCGATCTTAACCTTTGCAAGCTGATCTCATATCTCAATCCCTCCTCCGTCTCCAATCTCTAACTCTTCTTTGTCTCTGAGACCTGTCCGTTCGTCTCCTCCGCAGGCCAACCCGTT mRNA sequence ATGCAACCTCCGGCATCTCCTCCTCCGTCTCAGCTCAGGCATGCACAACTGTTTGCCTCCACCTCTCCCTCACGCAACCTCCACATCTCCTCCGGCGTCTCAGCTCTTCAACGTCTCCTCCTTTGTCAAAGCTCTTTGGCGTCTCCTTCTCCATCTCAGATCCGTTTCGTCAGAACCCAAGACCCGTCCGTTTTGTCCAAACCCGAGACGGTGAGACCCGTCCGTTCCGTCTGTCTTCGATCTTAA Coding sequence (CDS) ATGCAACCTCCGGCATCTCCTCCTCCGTCTCAGCTCAGGCATGCACAACTGTTTGCCTCCACCTCTCCCTCACGCAACCTCCACATCTCCTCCGGCGTCTCAGCTCTTCAACGTCTCCTCCTTTGTCAAAGCTCTTTGGCGTCTCCTTCTCCATCTCAGATCCGTTTCGTCAGAACCCAAGACCCGTCCGTTTTGTCCAAACCCGAGACGGTGAGACCCGTCCGTTCCGTCTGTCTTCGATCTTAA Protein sequence MQPPASPPPSQLRHAQLFASTSPSRNLHISSGVSALQRLLLCQSSLASPSPSQIRFVRTQDPSVLSKPETVRPVRSVCLRS*
Homology
BLAST of CsaV3_3G023190.1 vs. NCBI nr
Match: KGN57994.1 (hypothetical protein Csa_010467 [Cucumis sativus]) HSP 1 Score: 154.8 bits (390), Expect = 3.1e-34 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
Query: 1 MQPPASPPPSQLRHAQLFASTSPSRNLHISSGVSALQRLLLCQSSLASPSPSQIRFVRTQ 60
MQPPASPPPSQLRHAQLFASTSPSRNLHISSGVSALQRLLLCQSSLASPSPSQIRFVRTQ
Sbjct: 1 MQPPASPPPSQLRHAQLFASTSPSRNLHISSGVSALQRLLLCQSSLASPSPSQIRFVRTQ 60
Query: 61 DPSVLSKPETVRPVRSVCLRS 82
DPSVLSKPETVRPVRSVCLRS
Sbjct: 61 DPSVLSKPETVRPVRSVCLRS 81
BLAST of CsaV3_3G023190.1 vs. ExPASy TrEMBL
Match: A0A0A0LAP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G423820 PE=4 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34 Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0
Query: 1 MQPPASPPPSQLRHAQLFASTSPSRNLHISSGVSALQRLLLCQSSLASPSPSQIRFVRTQ 60
MQPPASPPPSQLRHAQLFASTSPSRNLHISSGVSALQRLLLCQSSLASPSPSQIRFVRTQ
Sbjct: 1 MQPPASPPPSQLRHAQLFASTSPSRNLHISSGVSALQRLLLCQSSLASPSPSQIRFVRTQ 60
Query: 61 DPSVLSKPETVRPVRSVCLRS 82
DPSVLSKPETVRPVRSVCLRS
Sbjct: 61 DPSVLSKPETVRPVRSVCLRS 81
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN57994.1 | 3.1e-34 | 100.00 | hypothetical protein Csa_010467 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LAP7 | 1.5e-34 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G423820 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_3G023190.1.exon1 | CsaV3_3G023190.1.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_3G023190.1.cds1 | CsaV3_3G023190.1.cds1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_3G023190.1 | CsaV3_3G023190.1-protein | polypeptide |
|
