CsaV3_3G021560.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G021560.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Calcium-binding EF-hand family protein
Location	chr3: 18576955 .. 18577611 (-)
Sequence length	252
RNA-Seq Expression	CsaV3_3G021560.1
Synteny	CsaV3_3G021560.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGGAAAAAATGAAGAAGAGAAGAAAGAAAGAGCAAAAAAAAAAAAAAAAAAAGTGTGATTGCCCTAAGTTCAAGATCAATTATCCATTTCAGAATTAGCTGCACAAAAATGGCAGACAGTGGCGTAAACTCAGCCGATTTGGAGAGAATTTTCAAACGATTCGATGCCAATGGCGATGGCAAGATCTCGGCAACAGAGCTGGGAGATGCTTTGAACGAGTTCGGAGTTAGTTCCGAGGATGCCAAGAGGATGATGGACGCCATTGACAAAGATGGTGATGGCTACATTTCCTTCCAAGAATTCTTTGATTTCGCTAAGGATAATCGCGCTTTGATGAAGGATTTCGCCAAGGCGTTTTAGATTTTTTTATTTTAATGGAAGGATCTGATTATATGAATATGGTTACCGTGAAGGAGACGCTTCTTCTTCCTTTTGTTTTTTCTTTCTTTTGTACCACACACACACATATATAAACATAACATATACTGTGCTTCTCTTCATGAACGTTATAAATGTTATATTTTTCGATTAAGTTTCATTTTCATTTCTAAACTTTATAGTTGGTGTTATAGTCTCAAATTATTTGTTTTGATGCTCAAACTTTGATTGTTAATGCTATTGTGTGCCTTGCTATCTTAACAGATTTGTAGATTCA

mRNA sequence

ATGGCAGACAGTGGCGTAAACTCAGCCGATTTGGAGAGAATTTTCAAACGATTCGATGCCAATGGCGATGGCAAGATCTCGGCAACAGAGCTGGGAGATGCTTTGAACGAGTTCGGAGTTAGTTCCGAGGATGCCAAGAGGATGATGGACGCCATTGACAAAGATGGTGATGGCTACATTTCCTTCCAAGAATTCTTTGATTTCGCTAAGGATAATCGCGCTTTGATGAAGGATTTCGCCAAGGCGTTTTAG

Coding sequence (CDS)

ATGGCAGACAGTGGCGTAAACTCAGCCGATTTGGAGAGAATTTTCAAACGATTCGATGCCAATGGCGATGGCAAGATCTCGGCAACAGAGCTGGGAGATGCTTTGAACGAGTTCGGAGTTAGTTCCGAGGATGCCAAGAGGATGATGGACGCCATTGACAAAGATGGTGATGGCTACATTTCCTTCCAAGAATTCTTTGATTTCGCTAAGGATAATCGCGCTTTGATGAAGGATTTCGCCAAGGCGTTTTAG

Protein sequence

MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYISFQEFFDFAKDNRALMKDFAKAF*

Homology

[Close]

BLAST of CsaV3_3G021560.1 vs. NCBI nr
Match: XP_004149790.1 (probable calcium-binding protein CML28 [Cucumis sativus] >KGN57835.1 hypothetical protein Csa_010503 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI 60
          MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI
Sbjct: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI 60

Query: 61 SFQEFFDFAKDNRALMKDFAKAF 84
          SFQEFFDFAKDNRALMKDFAKAF
Sbjct: 61 SFQEFFDFAKDNRALMKDFAKAF 83

[Close]

BLAST of CsaV3_3G021560.1 vs. NCBI nr
Match: XP_016902062.1 (PREDICTED: polcalcin Bra n 2-like [Cucumis melo])

HSP 1 Score: 158.3 bits (399), Expect = 2.9e-35
Identity = 80/83 (96.39%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI 60
          MADSGVNSAD ERIFKRFDANGDGKISATELGDALN FGVSSEDAKRMMDAIDKDGDGYI
Sbjct: 1  MADSGVNSADCERIFKRFDANGDGKISATELGDALNGFGVSSEDAKRMMDAIDKDGDGYI 60

Query: 61 SFQEFFDFAKDNRALMKDFAKAF 84
          SFQEF DFAKDNRALMKDFAKAF
Sbjct: 61 SFQEFSDFAKDNRALMKDFAKAF 83

[Close]

BLAST of CsaV3_3G021560.1 vs. NCBI nr
Match: XP_022948513.1 (probable calcium-binding protein CML28 [Cucurbita moschata] >XP_022998721.1 probable calcium-binding protein CML28 [Cucurbita maxima] >XP_023523664.1 probable calcium-binding protein CML28 [Cucurbita pepo subsp. pepo] >KAG6607008.1 Polcalcin Nic t 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036707.1 Polcalcin Nic t 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.8 bits (377), Expect = 1.0e-32
Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI 60
          MAD+GV+SA+ ERIFKRFDANGDG+ISATELGDALN  GVSSEDAKRMMDAIDKDGDG+I
Sbjct: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFI 60

Query: 61 SFQEFFDFAKDNRALMKDFAKAF 84
          SFQEFF+FAKDNRALMKDFAKAF
Sbjct: 61 SFQEFFEFAKDNRALMKDFAKAF 83

[Close]

BLAST of CsaV3_3G021560.1 vs. NCBI nr
Match: XP_038874793.1 (probable calcium-binding protein CML28 [Benincasa hispida])

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-31
Identity = 73/83 (87.95%), Postives = 79/83 (95.18%), Query Frame = 0


Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI 60
          MA+SGV++AD ERIFKRFDANGDGKISATELGDALN FGVS+EDAKRMMDAIDKDGDG I
Sbjct: 1  MAESGVSAADCERIFKRFDANGDGKISATELGDALNGFGVSAEDAKRMMDAIDKDGDGCI 60

Query: 61 SFQEFFDFAKDNRALMKDFAKAF 84
          SF+EF +FAKDNRALMKDFAKAF
Sbjct: 61 SFEEFAEFAKDNRALMKDFAKAF 83

[Close]

BLAST of CsaV3_3G021560.1 vs. NCBI nr
Match: XP_022143412.1 (polcalcin Bra n 2-like [Momordica charantia])

HSP 1 Score: 135.2 bits (339), Expect = 2.6e-28
Identity = 69/84 (82.14%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 1  MAD-SGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGY 60
          MAD SGV++ + ER+FKRFDANGDGKISATELGDAL  FGVS+EDAK MMDAIDKDGDG+
Sbjct: 1  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGF 60

Query: 61 ISFQEFFDFAKDNRALMKDFAKAF 84
          IS  EF DFAKDNRALMKDFAKAF
Sbjct: 61 ISLDEFSDFAKDNRALMKDFAKAF 84

[Close]

BLAST of CsaV3_3G021560.1 vs. ExPASy Swiss-Prot
Match: Q9SRP7 (Probable calcium-binding protein CML28 OS=Arabidopsis thaliana OX=3702 GN=CML28 PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-22
Identity = 57/84 (67.86%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGY 60
          MAD+    A+ +RIFK+FDANGDGKISA ELGDAL   G V+ ED KRMM  ID DGDGY
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGY 60

Query: 61 ISFQEFFDFAKDNRALMKDFAKAF 84
          IS+QEF DFA  NR LMKD AK F
Sbjct: 61 ISYQEFIDFASANRGLMKDVAKIF 83

[Close]

BLAST of CsaV3_3G021560.1 vs. ExPASy Swiss-Prot
Match: P69199 (Polcalcin Bra r 2 OS=Brassica campestris OX=3711 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.5e-22
Identity = 56/84 (66.67%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGY 60
          MAD+    A+ +RIFK+FDANGDGKISA+ELGDAL   G V+ +D KRMM  ID DGDGY
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISASELGDALKNLGSVTHDDIKRMMAEIDTDGDGY 60

Query: 61 ISFQEFFDFAKDNRALMKDFAKAF 84
          IS+QEF DFA  NR LMKD AK F
Sbjct: 61 ISYQEFSDFASANRGLMKDVAKIF 83

[Close]

BLAST of CsaV3_3G021560.1 vs. ExPASy Swiss-Prot
Match: P69198 (Polcalcin Bra n 2 OS=Brassica napus OX=3708 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.5e-22
Identity = 56/84 (66.67%), Postives = 64/84 (76.19%), Query Frame = 0


Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGY 60
          MAD+    A+ +RIFK+FDANGDGKISA+ELGDAL   G V+ +D KRMM  ID DGDGY
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISASELGDALKNLGSVTHDDIKRMMAEIDTDGDGY 60

Query: 61 ISFQEFFDFAKDNRALMKDFAKAF 84
          IS+QEF DFA  NR LMKD AK F
Sbjct: 61 ISYQEFSDFASANRGLMKDVAKIF 83

[Close]

BLAST of CsaV3_3G021560.1 vs. ExPASy Swiss-Prot
Match: Q84V36 (Polcalcin Che a 3 OS=Chenopodium album OX=3559 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.1e-20
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 0


Query: 3  DSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGYIS 62
          D+  + AD ERIFKRFD NGDGKIS++ELGDAL   G V+ ++ +RMM  ID DGDG+IS
Sbjct: 5  DTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFIS 64

Query: 63 FQEFFDFAKDNRALMKDFAKAF 84
          F EF DFA+ NR L+KD +K F
Sbjct: 65 FDEFTDFARANRGLVKDVSKIF 86

[Close]

BLAST of CsaV3_3G021560.1 vs. ExPASy Swiss-Prot
Match: Q39419 (Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.1e-20
Identity = 50/82 (60.98%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 3  DSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGYIS 62
          D   + A+ ERIFKRFDANGDGKISA ELG+AL   G ++ ++ K MM  ID DGDG+IS
Sbjct: 4  DHPQDKAERERIFKRFDANGDGKISAAELGEALKTLGSITPDEVKHMMAEIDTDGDGFIS 63

Query: 63 FQEFFDFAKDNRALMKDFAKAF 84
          FQEF DF + NR L+KD AK F
Sbjct: 64 FQEFTDFGRANRGLLKDVAKIF 85

[Close]

BLAST of CsaV3_3G021560.1 vs. ExPASy TrEMBL
Match: A0A0A0L775 (Putative calcium-binding protein CML28 OS=Cucumis sativus OX=3659 GN=Csa_3G345360 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.7e-38
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI 60
          MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI
Sbjct: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI 60

Query: 61 SFQEFFDFAKDNRALMKDFAKAF 84
          SFQEFFDFAKDNRALMKDFAKAF
Sbjct: 61 SFQEFFDFAKDNRALMKDFAKAF 83

[Close]

BLAST of CsaV3_3G021560.1 vs. ExPASy TrEMBL
Match: A0A1S4E1G1 (polcalcin Bra n 2-like OS=Cucumis melo OX=3656 GN=LOC103496835 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 80/83 (96.39%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI 60
          MADSGVNSAD ERIFKRFDANGDGKISATELGDALN FGVSSEDAKRMMDAIDKDGDGYI
Sbjct: 1  MADSGVNSADCERIFKRFDANGDGKISATELGDALNGFGVSSEDAKRMMDAIDKDGDGYI 60

Query: 61 SFQEFFDFAKDNRALMKDFAKAF 84
          SFQEF DFAKDNRALMKDFAKAF
Sbjct: 61 SFQEFSDFAKDNRALMKDFAKAF 83

[Close]

BLAST of CsaV3_3G021560.1 vs. ExPASy TrEMBL
Match: A0A6J1KB11 (probable calcium-binding protein CML28 OS=Cucurbita maxima OX=3661 GN=LOC111493300 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.0e-33
Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI 60
          MAD+GV+SA+ ERIFKRFDANGDG+ISATELGDALN  GVSSEDAKRMMDAIDKDGDG+I
Sbjct: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFI 60

Query: 61 SFQEFFDFAKDNRALMKDFAKAF 84
          SFQEFF+FAKDNRALMKDFAKAF
Sbjct: 61 SFQEFFEFAKDNRALMKDFAKAF 83

[Close]

BLAST of CsaV3_3G021560.1 vs. ExPASy TrEMBL
Match: A0A6J1G9I0 (probable calcium-binding protein CML28 OS=Cucurbita moschata OX=3662 GN=LOC111452170 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.0e-33
Identity = 74/83 (89.16%), Postives = 80/83 (96.39%), Query Frame = 0


Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGYI 60
          MAD+GV+SA+ ERIFKRFDANGDG+ISATELGDALN  GVSSEDAKRMMDAIDKDGDG+I
Sbjct: 1  MADNGVDSAECERIFKRFDANGDGQISATELGDALNGIGVSSEDAKRMMDAIDKDGDGFI 60

Query: 61 SFQEFFDFAKDNRALMKDFAKAF 84
          SFQEFF+FAKDNRALMKDFAKAF
Sbjct: 61 SFQEFFEFAKDNRALMKDFAKAF 83

[Close]

BLAST of CsaV3_3G021560.1 vs. ExPASy TrEMBL
Match: A0A6J1CQR0 (polcalcin Bra n 2-like OS=Momordica charantia OX=3673 GN=LOC111013292 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.3e-28
Identity = 69/84 (82.14%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 1  MAD-SGVNSADLERIFKRFDANGDGKISATELGDALNEFGVSSEDAKRMMDAIDKDGDGY 60
          MAD SGV++ + ER+FKRFDANGDGKISATELGDAL  FGVS+EDAK MMDAIDKDGDG+
Sbjct: 1  MADSSGVSAEECERVFKRFDANGDGKISATELGDALKGFGVSTEDAKTMMDAIDKDGDGF 60

Query: 61 ISFQEFFDFAKDNRALMKDFAKAF 84
          IS  EF DFAKDNRALMKDFAKAF
Sbjct: 61 ISLDEFSDFAKDNRALMKDFAKAF 84

[Close]

BLAST of CsaV3_3G021560.1 vs. TAIR 10
Match: AT3G03430.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-23
Identity = 57/84 (67.86%), Postives = 63/84 (75.00%), Query Frame = 0


Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGY 60
          MAD+    A+ +RIFK+FDANGDGKISA ELGDAL   G V+ ED KRMM  ID DGDGY
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGY 60

Query: 61 ISFQEFFDFAKDNRALMKDFAKAF 84
          IS+QEF DFA  NR LMKD AK F
Sbjct: 61 ISYQEFIDFASANRGLMKDVAKIF 83

[Close]

BLAST of CsaV3_3G021560.1 vs. TAIR 10
Match: AT5G17480.1 (pollen calcium-binding protein 1 )

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-20
Identity = 53/84 (63.10%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1  MADSGVNSADLERIFKRFDANGDGKISATELGDALNEFG-VSSEDAKRMMDAIDKDGDGY 60
          MAD+    A+ +RIFK+FDANGDGKISA EL +AL   G V+++D KRMM  ID DGDG 
Sbjct: 1  MADA-TEKAEHDRIFKKFDANGDGKISAAELEEALKTLGSVTADDVKRMMAEIDTDGDGN 60

Query: 61 ISFQEFFDFAKDNRALMKDFAKAF 84
          IS+QEF DFA  NR LMKD AK F
Sbjct: 61 ISYQEFTDFAGANRGLMKDVAKIF 83

[Close]

BLAST of CsaV3_3G021560.1 vs. TAIR 10
Match: AT1G24620.1 (EF hand calcium-binding protein family )

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 10  DLERIFKRFDANGDGKISATELGDALNEFG--VSSEDAKRMMDAIDKDGDGYISFQEFFD 69
           +LE +FK+FD NGDGKIS+ ELG  +   G  V  E+ ++ +  ID+ GDGYI+F+EF +
Sbjct: 37  ELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFVE 96

Query: 70  F---AKDNRALMKDFAKAF 84
                 D   ++++   AF
Sbjct: 97  LNTKGMDQNDVLENLKDAF 115

[Close]

BLAST of CsaV3_3G021560.1 vs. TAIR 10
Match: AT3G07490.1 (ARF-GAP domain 11 )

HSP 1 Score: 60.5 bits (145), Expect = 7.7e-10
Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 0


Query: 6  VNSADLERIFKRFDANGDGKISATELGDALNEFG--VSSEDAKRMMDAIDKDGDGYISFQ 65
          ++ A+L RIF+ FD NGDGKI+  EL D+L   G  +  +D  +M++ ID +GDGY+  +
Sbjct: 1  MDQAELARIFQMFDRNGDGKITKQELNDSLENLGIYIPDKDLVQMIEKIDLNGDGYVDIE 60

Query: 66 EF---FDFAKDNRALMKDFAKAF 84
          EF   +    + R   +D  +AF
Sbjct: 61 EFGGLYQTIMEERDEEEDMREAF 83

[Close]

BLAST of CsaV3_3G021560.1 vs. TAIR 10
Match: AT1G73630.1 (EF hand calcium-binding protein family )

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-09
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 10 DLERIFKRFDANGDGKISATELGDALNEFGVS--SEDAKRMMDAIDKDGDGYISFQEFFD 69
          +L+++F +FDANGDGKIS +ELG+     G S   E+  R++D ID D DG+I+ +EF  
Sbjct: 20 ELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQEEFAT 79

Query: 70 FAKDNRALMK 78
            + + + ++
Sbjct: 80 ICRSSSSAVE 89

The following BLAST results are available for this feature:

BLAST of CsaV3_3G021560.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149790.1	1.4e-37	100.00	probable calcium-binding protein CML28 [Cucumis sativus] >KGN57835.1 hypothetica...	[more]
XP_016902062.1	2.9e-35	96.39	PREDICTED: polcalcin Bra n 2-like [Cucumis melo]	[more]
XP_022948513.1	1.0e-32	89.16	probable calcium-binding protein CML28 [Cucurbita moschata] >XP_022998721.1 prob...	[more]
XP_038874793.1	1.1e-31	87.95	probable calcium-binding protein CML28 [Benincasa hispida]	[more]
XP_022143412.1	2.6e-28	82.14	polcalcin Bra n 2-like [Momordica charantia]	[more]

BLAST of CsaV3_3G021560.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRP7	2.2e-22	67.86	Probable calcium-binding protein CML28 OS=Arabidopsis thaliana OX=3702 GN=CML28 ...	[more]
P69199	6.5e-22	66.67	Polcalcin Bra r 2 OS=Brassica campestris OX=3711 PE=1 SV=1	[more]
P69198	6.5e-22	66.67	Polcalcin Bra n 2 OS=Brassica napus OX=3708 PE=1 SV=1	[more]
Q84V36	6.1e-20	60.98	Polcalcin Che a 3 OS=Chenopodium album OX=3559 PE=1 SV=1	[more]
Q39419	6.1e-20	60.98	Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1	[more]

BLAST of CsaV3_3G021560.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L775	6.7e-38	100.00	Putative calcium-binding protein CML28 OS=Cucumis sativus OX=3659 GN=Csa_3G34536...	[more]
A0A1S4E1G1	1.4e-35	96.39	polcalcin Bra n 2-like OS=Cucumis melo OX=3656 GN=LOC103496835 PE=4 SV=1	[more]
A0A6J1KB11	5.0e-33	89.16	probable calcium-binding protein CML28 OS=Cucurbita maxima OX=3661 GN=LOC1114933...	[more]
A0A6J1G9I0	5.0e-33	89.16	probable calcium-binding protein CML28 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1CQR0	1.3e-28	82.14	polcalcin Bra n 2-like OS=Momordica charantia OX=3673 GN=LOC111013292 PE=4 SV=1	[more]

BLAST of CsaV3_3G021560.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03430.1	1.6e-23	67.86	Calcium-binding EF-hand family protein	[more]
AT5G17480.1	1.6e-20	63.10	pollen calcium-binding protein 1	[more]
AT1G24620.1	1.2e-10	40.51	EF hand calcium-binding protein family	[more]
AT3G07490.1	7.7e-10	38.55	ARF-GAP domain 11	[more]
AT1G73630.1	1.3e-09	40.00	EF hand calcium-binding protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 44..72 e-value: 1.2E-4 score: 31.4 coord: 10..38 e-value: 9.6E-5 score: 31.8
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 10..69 e-value: 3.1E-13 score: 49.9
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 43..75 score: 12.78389
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 6..41 score: 15.433954
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 10..65 e-value: 1.31474E-14 score: 59.8689
None	No IPR available	GENE3D	1.10.238.10		coord: 2..80 e-value: 5.6E-22 score: 80.3
None	No IPR available	PANTHER	PTHR23064	TROPONIN	coord: 1..83
None	No IPR available	PANTHER	PTHR23064:SF60	POLCALCIN NIC T 1	coord: 1..83
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 53..65
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 19..31
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 9..69

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_3G021560	CsaV3_3G021560	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G021560.1.exon1	CsaV3_3G021560.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G021560.1.cds1	CsaV3_3G021560.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G021560.1	CsaV3_3G021560.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding