CsaV3_3G006390.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G006390.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr3: 5543936 .. 5544199 (-)
Sequence length264
RNA-Seq ExpressionCsaV3_3G006390.1
SyntenyCsaV3_3G006390.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAACAGATCTGAGCGACTGGTTAGGAGAGGTGAGCGTCGACTTGCAGGCAGGACTGGAAGAGACAGAGACGTGTGCGGCTTGAAAGATGGAGGCAACCGGGCAATTGACAAACCGAGAGAGAAACCCTACGCGAACGGTTGGATGAACCGATGGCTTCGACTGAGCTTGCCCGCGACGCAGCTGATGAAGATAGGGCGATGCTTCAATGGGTTGTACGACTCAAACGGGACAATCGGCTTCGTGGAGGCTATGGCTTAA

mRNA sequence

ATGCAAAACAGATCTGAGCGACTGGTTAGGAGAGGTGAGCGTCGACTTGCAGGCAGGACTGGAAGAGACAGAGACGTGTGCGGCTTGAAAGATGGAGGCAACCGGGCAATTGACAAACCGAGAGAGAAACCCTACGCGAACGGTTGGATGAACCGATGGCTTCGACTGAGCTTGCCCGCGACGCAGCTGATGAAGATAGGGCGATGCTTCAATGGGTTGTACGACTCAAACGGGACAATCGGCTTCGTGGAGGCTATGGCTTAA

Coding sequence (CDS)

ATGCAAAACAGATCTGAGCGACTGGTTAGGAGAGGTGAGCGTCGACTTGCAGGCAGGACTGGAAGAGACAGAGACGTGTGCGGCTTGAAAGATGGAGGCAACCGGGCAATTGACAAACCGAGAGAGAAACCCTACGCGAACGGTTGGATGAACCGATGGCTTCGACTGAGCTTGCCCGCGACGCAGCTGATGAAGATAGGGCGATGCTTCAATGGGTTGTACGACTCAAACGGGACAATCGGCTTCGTGGAGGCTATGGCTTAA

Protein sequence

MQNRSERLVRRGERRLAGRTGRDRDVCGLKDGGNRAIDKPREKPYANGWMNRWLRLSLPATQLMKIGRCFNGLYDSNGTIGFVEAMA*
Homology
[Close]
BLAST of CsaV3_3G006390.1 vs. NCBI nr
Match: KGN56251.1 (hypothetical protein Csa_011046 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 1.2e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQNRSERLVRRGERRLAGRTGRDRDVCGLKDGGNRAIDKPREKPYANGWMNRWLRLSLPA 60
          MQNRSERLVRRGERRLAGRTGRDRDVCGLKDGGNRAIDKPREKPYANGWMNRWLRLSLPA
Sbjct: 1  MQNRSERLVRRGERRLAGRTGRDRDVCGLKDGGNRAIDKPREKPYANGWMNRWLRLSLPA 60

Query: 61 TQLMKIGRCFNGLYDSNGTIGFVEAMA 88
          TQLMKIGRCFNGLYDSNGTIGFVEAMA
Sbjct: 61 TQLMKIGRCFNGLYDSNGTIGFVEAMA 87

[Close]
BLAST of CsaV3_3G006390.1 vs. ExPASy TrEMBL
Match: A0A0A0L801 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G108510 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 5.6e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQNRSERLVRRGERRLAGRTGRDRDVCGLKDGGNRAIDKPREKPYANGWMNRWLRLSLPA 60
          MQNRSERLVRRGERRLAGRTGRDRDVCGLKDGGNRAIDKPREKPYANGWMNRWLRLSLPA
Sbjct: 1  MQNRSERLVRRGERRLAGRTGRDRDVCGLKDGGNRAIDKPREKPYANGWMNRWLRLSLPA 60

Query: 61 TQLMKIGRCFNGLYDSNGTIGFVEAMA 88
          TQLMKIGRCFNGLYDSNGTIGFVEAMA
Sbjct: 61 TQLMKIGRCFNGLYDSNGTIGFVEAMA 87

The following BLAST results are available for this feature:
BLAST of CsaV3_3G006390.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56251.11.2e-42100.00hypothetical protein Csa_011046 [Cucumis sativus][more]
BLAST of CsaV3_3G006390.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_3G006390.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8015.6e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G108510 PE=4 SV=1[more]
BLAST of CsaV3_3G006390.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..40

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_3G006390CsaV3_3G006390gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G006390.1.exon1CsaV3_3G006390.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_3G006390.1.cds1CsaV3_3G006390.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_3G006390.1CsaV3_3G006390.1-proteinpolypeptide