CsaV3_2G035980.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G035980.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 24176008 .. 24176259 (+)
Sequence length225
RNA-Seq ExpressionCsaV3_2G035980.1
SyntenyCsaV3_2G035980.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACATAGATCAGCCTCTGTCTCCACCATCTGGATTGCTCTCACTGTCACTCTCTGTAGTGTTTGTTTTTAGTGTCCGAAGGTTTGTGTGGGTAAAGGGGGGGCAGTATCTGTATCTGTGGAGGAACCGAAGGAAGCCAAGTTTGGTCTCATTTTTATTTTTGGGTATTTGGGATTTGGGATTTTGGGAATTTGGGTGTTGGATATTGGAGGATTTGGAATTAAAAAGATTAGCTCTTTTTGCTTTTAG

mRNA sequence

ATGGGACATAGATCAGCCTCTGTCTCCACCATCTGGATTGCTCTCACTTGTCCGAAGGTTTGTGTGGGTAAAGGGGGGGCAGTATCTGTATCTGTGGAGGAACCGAAGGAAGCCAAGTTTGGTCTCATTTTTATTTTTGGGTATTTGGGATTTGGGATTTTGGGAATTTGGGTGTTGGATATTGGAGGATTTGGAATTAAAAAGATTAGCTCTTTTTGCTTTTAG

Coding sequence (CDS)

ATGGGACATAGATCAGCCTCTGTCTCCACCATCTGGATTGCTCTCACTTGTCCGAAGGTTTGTGTGGGTAAAGGGGGGGCAGTATCTGTATCTGTGGAGGAACCGAAGGAAGCCAAGTTTGGTCTCATTTTTATTTTTGGGTATTTGGGATTTGGGATTTTGGGAATTTGGGTGTTGGATATTGGAGGATTTGGAATTAAAAAGATTAGCTCTTTTTGCTTTTAG

Protein sequence

MGHRSASVSTIWIALTCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILGIWVLDIGGFGIKKISSFCF*
Homology
[Close]
BLAST of CsaV3_2G035980.1 vs. NCBI nr
Match: KGN63356.1 (hypothetical protein Csa_022513 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 2.2e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MGHRSASVSTIWIALTCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILGIWVLD 60
          MGHRSASVSTIWIALTCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILGIWVLD
Sbjct: 1  MGHRSASVSTIWIALTCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILGIWVLD 60

Query: 61 IGGFGIKKISSFCF 75
          IGGFGIKKISSFCF
Sbjct: 61 IGGFGIKKISSFCF 74

[Close]
BLAST of CsaV3_2G035980.1 vs. ExPASy TrEMBL
Match: A0A0A0LTL4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G432240 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.1e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MGHRSASVSTIWIALTCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILGIWVLD 60
          MGHRSASVSTIWIALTCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILGIWVLD
Sbjct: 1  MGHRSASVSTIWIALTCPKVCVGKGGAVSVSVEEPKEAKFGLIFIFGYLGFGILGIWVLD 60

Query: 61 IGGFGIKKISSFCF 75
          IGGFGIKKISSFCF
Sbjct: 61 IGGFGIKKISSFCF 74

The following BLAST results are available for this feature:
BLAST of CsaV3_2G035980.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63356.12.2e-34100.00hypothetical protein Csa_022513 [Cucumis sativus][more]
BLAST of CsaV3_2G035980.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G035980.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTL41.1e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G432240 PE=4 SV=1[more]
BLAST of CsaV3_2G035980.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G035980CsaV3_2G035980gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G035980.1.exon1CsaV3_2G035980.1.exon1exon
CsaV3_2G035980.1.exon2CsaV3_2G035980.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G035980.1.cds1CsaV3_2G035980.1.cds1CDS
CsaV3_2G035980.1.cds2CsaV3_2G035980.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G035980.1CsaV3_2G035980.1-proteinpolypeptide