CsaV3_2G024580.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G024580.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2: 17037647 .. 17037856 (-)
Sequence length111
RNA-Seq ExpressionCsaV3_2G024580.1
SyntenyCsaV3_2G024580.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAGAATGGGGGAAGTGGCCGTTGCCAACGGAAGGCAATCCCAGGAAAAGGACCCAACTTTTTTGAAATTTGGAATTTGTAACGTTACCCAACGGTCGCATGGAGTGGACCCACCTATTATACCTCATTATAATTTCGGAAAATGCTCAACCCCTTTTTCTCATTCTTATAAATTGAAGCGCTTTTCTTTTGCGTTAATTAACTG

mRNA sequence

AATTTGGAATTTGTAACGTTACCCAACGGTCGCATGGAGTGGACCCACCTATTATACCTCATTATAATTTCGGAAAATGCTCAACCCCTTTTTCTCATTCTTATAAATTGA

Coding sequence (CDS)

AATTTGGAATTTGTAACGTTACCCAACGGTCGCATGGAGTGGACCCACCTATTATACCTCATTATAATTTCGGAAAATGCTCAACCCCTTTTTCTCATTCTTATAAATTGA

Protein sequence

NLEFVTLPNGRMEWTHLLYLIIISENAQPLFLILIN*
Homology
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BLAST of CsaV3_2G024580.1 vs. NCBI nr
Match: KAE8652034.1 (hypothetical protein Csa_023902, partial [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-10
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 0 

Query: 1  NLEFVTLPNGRMEWTHLLYLIIISENAQPLFLILIN 37
          NLEFVTLPNGRMEWTHLLYLIIISENAQPLFLILIN
Sbjct: 1  NLEFVTLPNGRMEWTHLLYLIIISENAQPLFLILIN 36

The following BLAST results are available for this feature:
BLAST of CsaV3_2G024580.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652034.11.1e-10100.00hypothetical protein Csa_023902, partial [Cucumis sativus][more]
BLAST of CsaV3_2G024580.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G024580.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G024580.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_2G024580CsaV3_2G024580gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G024580.1.exon1CsaV3_2G024580.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_2G024580.1.cds1CsaV3_2G024580.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_2G024580.1CsaV3_2G024580.1-proteinpolypeptide