CsaV3_2G002060.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G002060.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr2: 750317 .. 753948 (-)
Sequence length	303
RNA-Seq Expression	CsaV3_2G002060.1
Synteny	CsaV3_2G002060.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACCCTAAAGCTTCAGCCATGGCGTCTTGAACAGAGAGAAACAGCCATGGAAATTTCGGCAATCTGCAACTGTGAGAAATGTTTTCATCCTTTTTTTTCTCTCTTTTTTCAGTTTTCTTTTTCTTTCTTTTCGCTCGGTCCCTCTCTTTTAGGCACGTGACCATTCTTTGTCCCGTTCCTCTTACTTTTCTTCGGATTTATTCTTTTCCATTTTTTTCCTTTACTAAAATAATTTTCGGAACTATATATATATAATAACATGGTTTTCTAAACGGTCGGTTGTTGAATATATATATATATATTTTAATTTTACAAATATACAGCGAGATCCGTAAGTCTATAAACGTTAGAAATCTATTATCATATTACACGACCATGATATTCTAACACTGAGAGAAGTCTATCACATATATATTTTGTTATATTTACAATTTTATTTTAAATGTTGGTATATAAGAAGTTGCCACAAATTATAATTATCCCAAAAAAAAGTGACGATTGAAATCAAGTGGGTTTTCATTAGTATAGTTGCATCGGATAATACTTTTAGGTATAATAAGTGTATAACAACTTTTATAAGAAATTGTAAATATAATAAAATCTATTAGTGATAGACTATTACTGGTTATATGGTTAATCACTTTAACAAAATCTATTTACACTCTATGACAAAACTAAGAGTAATGAGTTTTTGTACTAGGCTTTTGAGCGGTAAATAATTTGTCTTTTTTATTGTTCTTGAAAAAACTCTAATATTACTCTTACTCTTAAATTGATAAAATATTTATACTTTTTAAAAGGAACATTTTTAAATTTAGTAAAATAAATTAAAATATTTACAAACTATCGCAAAATTTTGGATTTTATCAACGATAGAAACTAATAACTTTTTATCACTATCTATCAACGTCACTTTATAGAATCTGAAATTTTTTTATATGTTATAAATATATGGTCAAATTTTTTATTTTTGTCAATTTTTCTTTCTAAAAGAATCAAGTTTAATTAATTTTATTTTTAAATGATTTTGTTATATTGATGGTAAATATTTTATCAATTTTTTCTATTTTTAAAAAAAAAACTTCTTTAATTTTCTTCATTCATTATCTACTTTTTATTGATTGTTTAAAAAAATAATTTTTAAATGATTGTTTATATTTTAATGTTTGACAAACAATTCAACCATGGTTCTTAAAAATGATGCAAATTATTGCTTGAAATGGAGAGGAAATATGTTTCATTTTCAAACACAAAATGACATCCAATAAGGCTTTAAATAAGCATTCCGTTTTTAATTAAATTTACTAACATCTCTTCTATCTCTAAATCTTTTGCATAAATATCTTGTATTGATTTATATTTTAAAAATCGAGTCAAAATTTAAAATTTAAATTGTTTTTAAATTTTAGAATTTTTTTCCATTTTAAAAAATATAAAAGAAATAGTCATTTATCCATAGTTTCATGATTGAAAGACATGAAACACTTTAGTAAAATCATAAATTTTCAATCATTATCAATAATTTATTAGGTCGCTATAAATGTGAAAAAAAGTTAGATATAAAATATCAATATAACAACATATATATTCTCTATTTTTAACTTGAATTTAAATTACTTACTCTGACAAAATAATTTAGTCATTTCTTCGTACTAATTTTTGATTTATAAACTTATACAAATATTTAAAAATAACTTTTTATTAGATTAGAATCTAATTTACGTATCTATTACCAAATAAATATTTAAAATCAAGAGAACGTATAGTTATACGTCTCTTTCGAGAAATTCAATAAAATTTGAACGATCTCTAAAAATAGAAACCTTTATATTCTTTTTTTTTTCCTTTACAATATATGAACAAAACGACCTATTTAACATTTTACAATAGAAACAACAAGATTTATGAGCAATGTTGGGTAAGACAACTCTAAAAGGTTGATTTGGTGCAATTTCATTGACTATAAAGTTTCTAATTAACCTCATTTTGTTAGAACTTGGGAAAAAAAGAATGTGATTACATTTATTGCAAGAAGTTGGTGCACATAATTATTATATATGGGCATGTTACCTTTTTTCTTTTCTTTTTCCATATTCATATCACATTTATTTTAATCCTTAAAGTAGGTGACTTTTGGTGTTTAACACATTTTAGAATGATTTTAAAAGAGTTATTATATTTCACTTTTCATTAATTGATTGTCTGATAATGGAGTTTGAGTAACTATTTCGTTGTCAATGGGTGGTGCATATTCTTACAATATCTCTTTGGAAGCTAAAAGCTAAAATATATCACGTTTGTCAATACACAGAAAACTTGTTTCTAAGGATGATAAGGATAAAATTACCTTTCGCTTGTGAAAAGACTCGTTTAACCATGAGAATCTCCTGCTTGCATAATGATAGAAACTCAGCTCTCAGTACTAAATGCTCTCACTCATATTCATTGTTTGTCTTGCAAAAGTAGTCATGACAACTACTTGATGCTTGTGCTAAATGCTCCCACTTTGTCTCCCTGCACGTTTCTCGTTTGTCTTGTATATTAGAGAAATTGAGAGTCCGACATTGAAAAAACCAAAGAGACTCATACTCCATATAAGATAGATGAACTACTTTGTAAAGTCATTGATATACTGTATTTGAAATTCCATGAGCAACTCCGGTAAAACATAAAAGAGAATGTGGAAAGGAGGATAAATGGGTAGAACGCGATATTAAAAAAATGATGAGAGAAATTTTTGTACGAGGCATGACTAGGCGAGGAACAAACTAAATATTGGATTTAAAAAAGAATGAAAAAACCAGAGGAAAGAAAGAAGAAATATTGCATTCGAGATTAAAGTGATAATCCACCGTGACGTCGATATAAAAAAGGACCAAATTTCATTGATTTTCAAACTTGAGGTTAATTTTCATTAGGTAAATACGTGAAATCCAATCTCATTTAACCTAACAAAGTATAATTTCAATTTAAATTTTTATCTAATAAATTAACGCAACTAATTTTAAAACAGAGAGTTTGTAAAAATAGCAAAAAAAAATTATGATAATAGAGTTAATTGTCCCTTGTATTTTCTAACTCGCAAAAATAACAAATTTAAAACCAGATTATAATTACTAGTCATATTTATCAAATTTACAATATATAAAAAGATGTGTTATGAGTCGTTTTTTCATTTTTTTTTTATCATTCAATGCAATTTTCGATTTAATATCATGAGCAGTAAATTTATATTTATAATCTTGAAATAATGAACTAAATTTATAGTTTCAAAATTTAGAATCAAATAGATATATAGTTTTAAATTGACCTAATAATTGTTGTAATATACACTTTTACCCTTACTTCCTATTAATATTGAGATAAACTAAAATTTATTTATAAGTCTTTTATTTTCCAGGGGAAGTTGGAGATAAACAAGGCCTCTCCTCTCATAATTTCATAAATATCACAAATCTGAGAGATCAACACTACTCTTCAATCCTCATTGTTCTTTTTACCCTTTACCAGTTTTCATCTGATCTCCGTTTCCCTTTACCTCACGACTTCTCGAAAAATAGTTTCCGTTTCGATTTTACTTCTCCGGCCACTCTCCCTCAAGGCGGCGCCGCTGCGCTGGCAATATAA

mRNA sequence

ATGGAAACCCTAAAGCTTCAGCCATGGCGTCTTGAACAGAGAGAAACAGCCATGGAAATTTCGGCAATCTGCAACTGGGAAGTTGGAGATAAACAAGGCCTCTCCTCTCATAATTTCATAAATATCACAAATCTGAGAGATCAACACTACTCTTCAATCCTCATTGTTCTTTTTACCCTTTACCAGTTTTCATCTGATCTCCGTTTCCCTTTACCTCACGACTTCTCGAAAAATAGTTTCCGTTTCGATTTTACTTCTCCGGCCACTCTCCCTCAAGGCGGCGCCGCTGCGCTGGCAATATAA

Coding sequence (CDS)

ATGGAAACCCTAAAGCTTCAGCCATGGCGTCTTGAACAGAGAGAAACAGCCATGGAAATTTCGGCAATCTGCAACTGGGAAGTTGGAGATAAACAAGGCCTCTCCTCTCATAATTTCATAAATATCACAAATCTGAGAGATCAACACTACTCTTCAATCCTCATTGTTCTTTTTACCCTTTACCAGTTTTCATCTGATCTCCGTTTCCCTTTACCTCACGACTTCTCGAAAAATAGTTTCCGTTTCGATTTTACTTCTCCGGCCACTCTCCCTCAAGGCGGCGCCGCTGCGCTGGCAATATAA

Protein sequence

METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTLYQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI*

Homology

[Close]

BLAST of CsaV3_2G002060.1 vs. NCBI nr
Match: KGN60597.1 (hypothetical protein Csa_019341 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 3.2e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL 60
           METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL
Sbjct: 1   METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL 60

Query: 61  YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI 101
           YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI
Sbjct: 61  YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI 100

[Close]

BLAST of CsaV3_2G002060.1 vs. ExPASy TrEMBL
Match: A0A0A0LIS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G002520 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.6e-49
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL 60
           METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL
Sbjct: 1   METLKLQPWRLEQRETAMEISAICNWEVGDKQGLSSHNFINITNLRDQHYSSILIVLFTL 60

Query: 61  YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI 101
           YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI
Sbjct: 61  YQFSSDLRFPLPHDFSKNSFRFDFTSPATLPQGGAAALAI 100

The following BLAST results are available for this feature:

BLAST of CsaV3_2G002060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60597.1	3.2e-49	100.00	hypothetical protein Csa_019341 [Cucumis sativus]	[more]

BLAST of CsaV3_2G002060.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G002060.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIS3	1.6e-49	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G002520 PE=4 SV=1	[more]

BLAST of CsaV3_2G002060.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_2G002060	CsaV3_2G002060	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G002060.1.exon2	CsaV3_2G002060.1.exon2	exon
CsaV3_2G002060.1.exon1	CsaV3_2G002060.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G002060.1.cds2	CsaV3_2G002060.1.cds2	CDS
CsaV3_2G002060.1.cds1	CsaV3_2G002060.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_2G002060.1	CsaV3_2G002060.1-protein	polypeptide