CsaV3_1G035710.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_1G035710.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat-containing protein
Location	chr1: 21825772 .. 21828448 (+)
Sequence length	819
RNA-Seq Expression	CsaV3_1G035710.1
Synteny	CsaV3_1G035710.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATTCGGTGGTTTTCCAGGTCGAAATTGCCCGTTTTTGCTTCGGTATTCCTACAGGGTTTAACGAGGAGACCAATTAGAGATGTCCCATTACCAGTTAAATCGACGATCACTGACTTTCAGCCGGATTCCAGGCGACCCATCTGGGGATTCCGGCTATATCACGACGGGAGGCCTCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGTAAAGAAGCACTTTTCGTTATTCAAGGATTGAAGAGATTCAAGGAAGATGAAGAGAAATTCGAAAAGTTCATGAAGAGTCATGTTTCAAGGCTCTTGAAATTGGATATGGTTGCTGTGCTTGGTGAACTCGAGCGGCAGGAGGAGGTTGCTTTAGCTGTCAAGGTTTATTTCCATTTCCTTTTCTTCAATATGTTCTGTCGTTTTTGTTGCTCTTTCTGGATCCTCACATTCATTTTAGATTTTACGTAATGGGTCGTCTCAGAAATTGATAATTGGCTTCTGTACATTACACATAATATCGCTCTTGTTTGTTGTCACTGCAACTTATTTTTCTTGTTAGTTGATGCTGTGAGTTTTCTTCTTAACTGTGATGTTATTGATGGTTAGTTCCTTTATTGAATAACTTTACTAATGCTGCATTCAAGGTTCTATTCTGTTCTTGAATTTGGAAGATTATGTTTCTCAGCTTCTAGCTTCCTTAGTATGAATATGATGTTCTTGACTTTTTCCCTGCATCATTTCATGGAGCTCTTGTGCAATTTTTATTAAATTTCAATTATTTCCTTCTTTATTCATGGTAGTAATCGAAGAATGCTTAAGGGAGGTCAGAGAGGAAGTAAATTCGTGTATTGGGTTCCTTTAAATGATATTGTTATTTTCGCACTTCGTCTCAATAGTTTAGCTTGATTTATGTCGATGTTGCTCTTGCATTCAAAATTATTTCTTCCTTTTGAATACCGTCTTGTTTCTCTCCCGCTTAACTCTGATCTGCCCCTTTGAGTGCTTATCAGATCTACATCAAATGTTTCGAATGAGTTAAAGGTCTCAAATATGGAACATAGTTCATTTTAGTTGCGTGTGGAAACATTTTCTTTTACATTCTTTTTATCTTCAAGATTGAATTGATTTTACTTTATTAGTTTCTGGCAATCTTACATGCTTGTTGAAATTTCCAGATATTTAGGTTGATTCGGAAGCAAGACTGGTACAAGCCTGATGTTTATATATATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGACGCAATGAAATTATGGGAAAGCATGAGAGAGGAAAATTTATTCCCTGACTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAACGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGACGAGTTGCCATTTAGAATTTTGTTGAAAGGTCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGACTTTGAGGAGCTCTTTCCTGACCAGCATGTGTTCGATCCCCAGAAGAGATATTCAGCCTACGTTGATGTATGTTTTATGAAACTCTTTTTTCTCTTTAACTCTTTTCTTCCCAATTAATGTTGATTTTTTTTCTTGTATTCTGAAGGTTGGTAACTTGGTACCACTTAATAGGCAGTAATAGTAGCCCCTTTGCCATTCTATGCTTCCTTGTGACATTTAATATCTTGTGAGTTTTTAAATACCAAATATTTTTCACTTTTCCAAAAATATGGGAAGCGACCAAAACGTGCCTGTGAGTAAAATTAGCTTGAGAAACCCAAAGAAGGTTGGATAAGAGTCAGTCAGATGTAAAACGAGTCATGTGGATAGTAGTTGAGTTGGAGCTGAGAACGCTCTTAGTCTTAGGAATTAGGATTCTCTTGGGAAGAGGATCAATCAAGTGAGTCGTGTTATCCTTGTGTTTAGAACTTGATACTATCCTCTTCCAGCCCTTTAAATGAAATGCAGCAAAACTAAAGGAAGGAAAATTCATAGATCAACACCATCGTCTCCGCTCTATGGAAACTACATACTGCAAGATCACCTGGTGTATGTCTTCAATATATAGGTTATGAACCAACCATAGAGTTCTATTCGACAGGTGAGGAGCTTATCCTTCACCCTCCCATTTTGTGTTAAAGGGCGTTTTTTTGTAACAGACTGGGGTATATGCTATTTTGTTGGGGCTTTGTGGAGTGGGACAATAGAATGTTCAAAGGTTAGGATAGTTTTTCAAACGATATTTAGTCCCTCATTAGATTCTCTTTTTCTGAACTCTTCGTAAGTTGTAACTATTTGCCTAATTGTATTGCTCTAGGCTGGAGTCCTTTGTAGCTTGGCGTGTATTCTGCTGTTTATTCATAATGAAAAGTGGAATGCATTGGTTGTCCGCACTTTTGTTGGTTTAGTAGATTCTTTTGGAAGAGTACACCAATGTAGAGTTTTATTAAATGTAAAAAGTGTTGTAACAATAACAAATCGACCTTTAGCATTTTATCTTGCATGGTCTTGTTTTCAAGTACTTCATTGGCCCTGAATTCATCCTAACATTCTATACATCTGATCTTTCTCTTTTTCTCTTTTTAAATTACGCTTTATTTCAGTGAACTAACATGACGGTTTGTCAACGAACATTATTCCGG

mRNA sequence

ATGGCGATTCGGTGGTTTTCCAGGTCGAAATTGCCCGTTTTTGCTTCGGTATTCCTACAGGGTTTAACGAGGAGACCAATTAGAGATGTCCCATTACCAGTTAAATCGACGATCACTGACTTTCAGCCGGATTCCAGGCGACCCATCTGGGGATTCCGGCTATATCACGACGGGAGGCCTCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGTAAAGAAGCACTTTTCGTTATTCAAGGATTGAAGAGATTCAAGGAAGATGAAGAGAAATTCGAAAAGTTCATGAAGAGTCATGTTTCAAGGCTCTTGAAATTGGATATGGTTGCTGTGCTTGGTGAACTCGAGCGGCAGGAGGAGGTTGCTTTAGCTGTCAAGATATTTAGGTTGATTCGGAAGCAAGACTGGTACAAGCCTGATGTTTATATATATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGACGCAATGAAATTATGGGAAAGCATGAGAGAGGAAAATTTATTCCCTGACTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAACGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGACGAGTTGCCATTTAGAATTTTGTTGAAAGGTCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGACTTTGAGGAGCTCTTTCCTGACCAGCATGTGTTCGATCCCCAGAAGAGATATTCAGCCTACGTTGATGTATGTTTTATGAAACTCTTTTTTCTCTTTAACTCTTTTCTTCCCAATTAA

Coding sequence (CDS)

ATGGCGATTCGGTGGTTTTCCAGGTCGAAATTGCCCGTTTTTGCTTCGGTATTCCTACAGGGTTTAACGAGGAGACCAATTAGAGATGTCCCATTACCAGTTAAATCGACGATCACTGACTTTCAGCCGGATTCCAGGCGACCCATCTGGGGATTCCGGCTATATCACGACGGGAGGCCTCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGTAAAGAAGCACTTTTCGTTATTCAAGGATTGAAGAGATTCAAGGAAGATGAAGAGAAATTCGAAAAGTTCATGAAGAGTCATGTTTCAAGGCTCTTGAAATTGGATATGGTTGCTGTGCTTGGTGAACTCGAGCGGCAGGAGGAGGTTGCTTTAGCTGTCAAGATATTTAGGTTGATTCGGAAGCAAGACTGGTACAAGCCTGATGTTTATATATATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGACGCAATGAAATTATGGGAAAGCATGAGAGAGGAAAATTTATTCCCTGACTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAACGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGACGAGTTGCCATTTAGAATTTTGTTGAAAGGTCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGACTTTGAGGAGCTCTTTCCTGACCAGCATGTGTTCGATCCCCAGAAGAGATATTCAGCCTACGTTGATGTATGTTTTATGAAACTCTTTTTTCTCTTTAACTCTTTTCTTCCCAATTAA

Protein sequence

MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVFDPQKRYSAYVDVCFMKLFFLFNSFLPN*

Homology

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BLAST of CsaV3_1G035710.1 vs. NCBI nr
Match: KAE8653270.1 (hypothetical protein Csa_023162 [Cucumis sativus])

HSP 1 Score: 555.1 bits (1429), Expect = 3.5e-154
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0


Query: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60
           MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVFDPQKRYSAYVDVCFMKLFFLFNSFLPN 273
           DQHVFDPQKRYSAYVDVCFMKLFFLFNSFLPN
Sbjct: 241 DQHVFDPQKRYSAYVDVCFMKLFFLFNSFLPN 272

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BLAST of CsaV3_1G035710.1 vs. NCBI nr
Match: XP_004145279.2 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus] >XP_031741152.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus] >KAE8653263.1 hypothetical protein Csa_020110 [Cucumis sativus])

HSP 1 Score: 521.9 bits (1343), Expect = 3.2e-144
Identity = 256/256 (100.00%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60
           MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVFDPQKRYSAYVD 257
           DQHVFDPQKRYSAYVD
Sbjct: 241 DQHVFDPQKRYSAYVD 256

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BLAST of CsaV3_1G035710.1 vs. NCBI nr
Match: XP_008457435.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis melo] >KAA0031765.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 484.2 bits (1245), Expect = 7.5e-133
Identity = 237/247 (95.95%), Postives = 241/247 (97.57%), Query Frame = 0


Query: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60
           MAIRWFSRSKLP+FA VFL+GLTRRPIRDVPLPV STIT FQPDS RPIWGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK  KFMKSHVSRLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMNVYEDMKKSP+PPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVFDP 248
           DQHVFDP
Sbjct: 241 DQHVFDP 247

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BLAST of CsaV3_1G035710.1 vs. NCBI nr
Match: XP_038895593.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_038895594.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_038895595.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida])

HSP 1 Score: 479.6 bits (1233), Expect = 1.8e-131
Identity = 232/247 (93.93%), Postives = 241/247 (97.57%), Query Frame = 0


Query: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60
           MAIRWFSRSKLP+FASVFL+GLTRRPIRD  LPVKSTIT FQPDS RP+WGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFASVFLRGLTRRPIRDSSLPVKSTITGFQPDSSRPLWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK EKFMKSHV RLLKLDM++VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMISVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLI+KQDWYKPDV+IYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMN+YEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVFDP 248
           DQHV+DP
Sbjct: 241 DQHVYDP 247

[Close]

BLAST of CsaV3_1G035710.1 vs. NCBI nr
Match: TYJ97367.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 467.2 bits (1201), Expect = 9.5e-128
Identity = 229/239 (95.82%), Postives = 233/239 (97.49%), Query Frame = 0


Query: 9   SKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRPRGPLWRSR 68
           SKLP+FA VFL+GLTRRPIRDVPLPV STIT FQPDS RPIWGFRLYHDGRPRGPLWRSR
Sbjct: 248 SKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRPRGPLWRSR 307

Query: 69  KAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIF 128
           KAIGKEALFVIQGLKRFKEDEEK  KFMKSHVSRLLKLDM+AVLGELERQEEVALAVKIF
Sbjct: 308 KAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEEVALAVKIF 367

Query: 129 RLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLR 188
           RLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLR
Sbjct: 368 RLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLR 427

Query: 189 YGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVFDP 248
           YGSPSDAMNVYEDMKKSP+PPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVFDP
Sbjct: 428 YGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVFDP 486

[Close]

BLAST of CsaV3_1G035710.1 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 4.6e-93
Identity = 168/248 (67.74%), Postives = 203/248 (81.85%), Query Frame = 0


Query: 2   AIRWFSRSKLPVFASVFLQGLTRRP-IRDVPLPVKSTITDFQPDSRRPIWGF-RLYHDGR 61
           AIR  SR K P FAS+F Q +TR P I  +        T   P   +P   F   +HDGR
Sbjct: 3   AIRVCSR-KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVFVSRFHDGR 62

Query: 62  PRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQE 121
           PRGPLWR +K IGKEALFVI GLKR KED+EK +KF+K+HV RLLKLDM+AV+GELERQE
Sbjct: 63  PRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 122 EVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTY 181
           E ALA+K+F +I+KQ+WY+PDV++YKDLI++LA+SK+MD+AM LWE M++ENLFPDSQTY
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTY 182

Query: 182 TEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELF 241
           TEVIRGFLR G P+DAMNVYEDM KSPDPP+ELPFR+LLKGLLPHPLLRN+VK+DFEELF
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELF 242

Query: 242 PDQHVFDP 248
           P++H +DP
Sbjct: 243 PEKHAYDP 249

[Close]

BLAST of CsaV3_1G035710.1 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 8.0e-45
Identity = 82/188 (43.62%), Postives = 132/188 (70.21%), Query Frame = 0


Query: 71  IGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRL 130
           + KE L   + LKR +    + ++F+ SHVSRLLK D+V+VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 IRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYG 190
           +R++ WY+PD++ Y+D+++ LAR+KK+D+  K+WE +++E +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 SPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVFDPQKR 250
            P +AM +Y +M++SPD P  LPFR++LKGL+P+P LR +VK DF ELFP   V+DP + 
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPE- 180

Query: 251 YSAYVDVC 259
                D+C
Sbjct: 181 -----DIC 182

[Close]

BLAST of CsaV3_1G035710.1 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 2.4e-09
Identity = 46/158 (29.11%), Postives = 78/158 (49.37%), Query Frame = 0


Query: 66  RSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAV 125
           ++ K   ++A+ +I   +  K   EK     K    +LL   ++  L E         A+
Sbjct: 80  KNTKIASRKAISIILRREATKSIIEK-----KKGSKKLLPRTVLESLHERITALRWESAI 139

Query: 126 KIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRG 185
           ++F L+R+Q WYKP+V IY  LI+ L + K+ + A +L++ M  E    + + YT ++  
Sbjct: 140 QVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSA 199

Query: 186 FLRYGSPSDAMNVYEDMKKSPD-PPDELPFRILLKGLL 223
           + R G    A  + E MK S +  PD   + IL+K  L
Sbjct: 200 YSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232

[Close]

BLAST of CsaV3_1G035710.1 vs. ExPASy Swiss-Prot
Match: Q9FMQ1 (Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g12100 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 5.4e-09
Identity = 41/130 (31.54%), Postives = 66/130 (50.77%), Query Frame = 0


Query: 120 EVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTY 179
           +V   +++F  + K D   P V+IY  LI  L + K+M+DA +L++ M    L P   TY
Sbjct: 194 DVGKGLELFNRM-KHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITY 253

Query: 180 TEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRN--RVKQDFEE 239
             +I G+ + G+P  +  V E MK     P  + F  LLKGL    ++ +   V ++ ++
Sbjct: 254 NTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKD 313

Query: 240 L--FPDQHVF 246
           L   PD   F
Sbjct: 314 LGFVPDAFTF 322

[Close]

BLAST of CsaV3_1G035710.1 vs. ExPASy Swiss-Prot
Match: Q9LUR2 (Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g16710 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.7e-08
Identity = 32/98 (32.65%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 124 AVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVI 183
           A ++F L+ +   Y P+  IY  LI    +SK+++D MK++  M ++ +  ++ TYT +I
Sbjct: 312 ARQMFYLMERNGCY-PNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLI 371

Query: 184 RGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGL 222
           +G+   G P  A  V+  M     PPD   + +LL GL
Sbjct: 372 QGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGL 408

[Close]

BLAST of CsaV3_1G035710.1 vs. ExPASy TrEMBL
Match: A0A0A0LVE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 5.8e-139
Identity = 247/247 (100.00%), Postives = 247/247 (100.00%), Query Frame = 0


Query: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60
           MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVFDP 248
           DQHVFDP
Sbjct: 241 DQHVFDP 247

[Close]

BLAST of CsaV3_1G035710.1 vs. ExPASy TrEMBL
Match: A0A5A7SRJ7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00030 PE=4 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 3.6e-133
Identity = 237/247 (95.95%), Postives = 241/247 (97.57%), Query Frame = 0


Query: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60
           MAIRWFSRSKLP+FA VFL+GLTRRPIRDVPLPV STIT FQPDS RPIWGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK  KFMKSHVSRLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMNVYEDMKKSP+PPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVFDP 248
           DQHVFDP
Sbjct: 241 DQHVFDP 247

[Close]

BLAST of CsaV3_1G035710.1 vs. ExPASy TrEMBL
Match: A0A1S3C5H5 (pentatricopeptide repeat-containing protein At3g46870 OS=Cucumis melo OX=3656 GN=LOC103497124 PE=4 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 3.6e-133
Identity = 237/247 (95.95%), Postives = 241/247 (97.57%), Query Frame = 0


Query: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60
           MAIRWFSRSKLP+FA VFL+GLTRRPIRDVPLPV STIT FQPDS RPIWGFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK  KFMKSHVSRLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMNVYEDMKKSP+PPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVFDP 248
           DQHVFDP
Sbjct: 241 DQHVFDP 247

[Close]

BLAST of CsaV3_1G035710.1 vs. ExPASy TrEMBL
Match: A0A5D3BE11 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001780 PE=4 SV=1)

HSP 1 Score: 467.2 bits (1201), Expect = 4.6e-128
Identity = 229/239 (95.82%), Postives = 233/239 (97.49%), Query Frame = 0


Query: 9   SKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRPRGPLWRSR 68
           SKLP+FA VFL+GLTRRPIRDVPLPV STIT FQPDS RPIWGFRLYHDGRPRGPLWRSR
Sbjct: 248 SKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRPRGPLWRSR 307

Query: 69  KAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIF 128
           KAIGKEALFVIQGLKRFKEDEEK  KFMKSHVSRLLKLDM+AVLGELERQEEVALAVKIF
Sbjct: 308 KAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEEVALAVKIF 367

Query: 129 RLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLR 188
           RLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLR
Sbjct: 368 RLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLR 427

Query: 189 YGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVFDP 248
           YGSPSDAMNVYEDMKKSP+PPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVFDP
Sbjct: 428 YGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVFDP 486

[Close]

BLAST of CsaV3_1G035710.1 vs. ExPASy TrEMBL
Match: A0A6J1E045 (pentatricopeptide repeat-containing protein At3g46870 OS=Momordica charantia OX=3673 GN=LOC111024687 PE=4 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 1.6e-125
Identity = 223/247 (90.28%), Postives = 239/247 (96.76%), Query Frame = 0


Query: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60
           MAIR FSRSKLP+FASVFL+GLTRRPIRD+PLPVKS IT FQPDS RPI GFR YHDGRP
Sbjct: 1   MAIRGFSRSKLPIFASVFLRGLTRRPIRDIPLPVKSKITGFQPDSSRPICGFRPYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGLKRFKEDEEK +KFMKSHVSRLLKLDM++VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKSHVSRLLKLDMISVLGELERQEE 120

Query: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180
           VALAVKIFRLI+KQDWYKPDV++YKDLIIALA SKKMDDAM+LWESMR+E+LFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFMYKDLIIALAGSKKMDDAMELWESMRKEDLFPDSQTYT 180

Query: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLRYGSPSDAMN+YEDMKKSPDPPDELPFRILLKGLLPHPLLRN+VKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNKVKQDFEELFP 240

Query: 241 DQHVFDP 248
           DQ+V+DP
Sbjct: 241 DQNVYDP 247

[Close]

BLAST of CsaV3_1G035710.1 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 342.4 bits (877), Expect = 3.3e-94
Identity = 168/248 (67.74%), Postives = 203/248 (81.85%), Query Frame = 0


Query: 2   AIRWFSRSKLPVFASVFLQGLTRRP-IRDVPLPVKSTITDFQPDSRRPIWGF-RLYHDGR 61
           AIR  SR K P FAS+F Q +TR P I  +        T   P   +P   F   +HDGR
Sbjct: 3   AIRVCSR-KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVFVSRFHDGR 62

Query: 62  PRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQE 121
           PRGPLWR +K IGKEALFVI GLKR KED+EK +KF+K+HV RLLKLDM+AV+GELERQE
Sbjct: 63  PRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 122

Query: 122 EVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTY 181
           E ALA+K+F +I+KQ+WY+PDV++YKDLI++LA+SK+MD+AM LWE M++ENLFPDSQTY
Sbjct: 123 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTY 182

Query: 182 TEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELF 241
           TEVIRGFLR G P+DAMNVYEDM KSPDPP+ELPFR+LLKGLLPHPLLRN+VK+DFEELF
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELF 242

Query: 242 PDQHVFDP 248
           P++H +DP
Sbjct: 243 PEKHAYDP 249

[Close]

BLAST of CsaV3_1G035710.1 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 182.2 bits (461), Expect = 5.7e-46
Identity = 82/188 (43.62%), Postives = 132/188 (70.21%), Query Frame = 0


Query: 71  IGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRL 130
           + KE L   + LKR +    + ++F+ SHVSRLLK D+V+VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 IRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYG 190
           +R++ WY+PD++ Y+D+++ LAR+KK+D+  K+WE +++E +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 SPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVFDPQKR 250
            P +AM +Y +M++SPD P  LPFR++LKGL+P+P LR +VK DF ELFP   V+DP + 
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPE- 180

Query: 251 YSAYVDVC 259
                D+C
Sbjct: 181 -----DIC 182

[Close]

BLAST of CsaV3_1G035710.1 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-16
Identity = 59/177 (33.33%), Postives = 89/177 (50.28%), Query Frame = 0


Query: 61  RGPLWRSRKAIGKEALFVIQGLKR---------------FKEDEEKFEKFMKSHVSRLLK 120
           R PL R R  +  EA+  +Q LKR                       ++ + S   RLLK
Sbjct: 496 RKPLQRGR-MLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLK 555

Query: 121 LDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWE 180
            DMVAVL EL RQ E +LA+K+F  IRK+ WYKP V +Y D+I  +A +  M++   L+ 
Sbjct: 556 FDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYS 615

Query: 181 SMR-EENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGL 222
           +M+ E+ L  + + +  ++   L +      M+ Y  M+     PD   FR+L+ GL
Sbjct: 616 AMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRVLVLGL 671

[Close]

BLAST of CsaV3_1G035710.1 vs. TAIR 10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.7e-10
Identity = 46/158 (29.11%), Postives = 78/158 (49.37%), Query Frame = 0


Query: 66  RSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAV 125
           ++ K   ++A+ +I   +  K   EK     K    +LL   ++  L E         A+
Sbjct: 80  KNTKIASRKAISIILRREATKSIIEK-----KKGSKKLLPRTVLESLHERITALRWESAI 139

Query: 126 KIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRG 185
           ++F L+R+Q WYKP+V IY  LI+ L + K+ + A +L++ M  E    + + YT ++  
Sbjct: 140 QVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSA 199

Query: 186 FLRYGSPSDAMNVYEDMKKSPD-PPDELPFRILLKGLL 223
           + R G    A  + E MK S +  PD   + IL+K  L
Sbjct: 200 YSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232

[Close]

BLAST of CsaV3_1G035710.1 vs. TAIR 10
Match: AT1G77340.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.9e-10
Identity = 33/103 (32.04%), Postives = 62/103 (60.19%), Query Frame = 0


Query: 117 RQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDS 176
           R++EV  A K+F+ + +   ++ +V  Y  LI  L  +KK+D+A+ L   M+++N  P+ 
Sbjct: 202 RRKEVDAAFKVFKEMTQNGCHRNEV-SYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNV 261

Query: 177 QTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLK 220
           +TYT +I      G  S+AMN+++ M +S   PD+  + +L++
Sbjct: 262 RTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQ 303

The following BLAST results are available for this feature:

BLAST of CsaV3_1G035710.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653270.1	3.5e-154	100.00	hypothetical protein Csa_023162 [Cucumis sativus]	[more]
XP_004145279.2	3.2e-144	100.00	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus] >XP_031741152...	[more]
XP_008457435.1	7.5e-133	95.95	PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis melo] ...	[more]
XP_038895593.1	1.8e-131	93.93	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_0388955...	[more]
TYJ97367.1	9.5e-128	95.82	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_1G035710.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STF9	4.6e-93	67.74	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q1PFH7	8.0e-45	43.62	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]
Q9FKC3	2.4e-09	29.11	Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop...	[more]
Q9FMQ1	5.4e-09	31.54	Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidop...	[more]
Q9LUR2	2.7e-08	32.65	Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial OS...	[more]

BLAST of CsaV3_1G035710.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVE9	5.8e-139	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1	[more]
A0A5A7SRJ7	3.6e-133	95.95	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3C5H5	3.6e-133	95.95	pentatricopeptide repeat-containing protein At3g46870 OS=Cucumis melo OX=3656 GN...	[more]
A0A5D3BE11	4.6e-128	95.82	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1E045	1.6e-125	90.28	pentatricopeptide repeat-containing protein At3g46870 OS=Momordica charantia OX=...	[more]

BLAST of CsaV3_1G035710.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46870.1	3.3e-94	67.74	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	5.7e-46	43.62	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G09320.1	1.2e-16	33.33	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT5G48730.1	1.7e-10	29.11	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G77340.1	2.9e-10	32.04	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 139..187 e-value: 6.4E-10 score: 39.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 143..175 e-value: 3.6E-6 score: 24.8 coord: 178..205 e-value: 1.0E-4 score: 20.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 140..174 score: 11.125777
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 175..209 score: 10.599635
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 69..254 e-value: 3.0E-55 score: 188.4
None	No IPR available	PANTHER	PTHR46870:SF2	PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC	coord: 2..250
IPR044795	Pentatricopeptide repeat-containing protein THA8L-like	PANTHER	PTHR46870	PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC	coord: 2..250

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_1G035710	CsaV3_1G035710	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G035710.1.exon1	CsaV3_1G035710.1.exon1	exon
CsaV3_1G035710.1.exon2	CsaV3_1G035710.1.exon2	exon
CsaV3_1G035710.1.exon3	CsaV3_1G035710.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G035710.1.cds1	CsaV3_1G035710.1.cds1	CDS
CsaV3_1G035710.1.cds2	CsaV3_1G035710.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_1G035710.1	CsaV3_1G035710.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding