CsaV3_1G010560.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G010560.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1: 6576979 .. 6578255 (+)
Sequence length381
RNA-Seq ExpressionCsaV3_1G010560.1
SyntenyCsaV3_1G010560.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGAAAGAAAAGTGGGAGCAGAAAGTCTAAAATGAGAGGGAGAGAGAGAGAGTTTTACGAAAGGAAAAAAAAAAAAAGAGCCCACCTCGCTGAAAATTCATCATAGATTGTCGGATGAAACTCGTAGAGCAAGAACTCAACTTGGTAAGTCGTTTTTCTTTTAAAAATATAACTTGGAAAAATGAAAAAGTATTAGATTTGTCGGTTTCATTCTTTTAGATTCCAAAATTTCTTATTAGTTTCTTCCTATTAAAGAAACTTCACTGATTTTGTGTGTATTTTTATTTGGTATTGTCACAAGTTAAAAAGAAGTTGAAATCTAAATTTTCTGGGCAGGTTTCTATGGATTTATGTTAAAATATATAAGGAAGGAAATTTAGATGAGGCTTACAGAGTTGTCGTCGTTTGAAAAACCTTCCTAAATAGTTTCTTACGAACATGACTAAATTCGAATCACACTCTTACGTGTATGATGTGATCAATTAGAGTAAGGGAGTTCTGTGGTTAGTTAAATCTTATTTAGTTTTTCTCTCCACTACCATCAGCAGCTGTATGAGTACTACATAGTAATGTAACCTAATAGAAACTTCACTTTTCCAAGGTGATGACTGAGTTTGCTTTTCCAGTTGATGTGTGGACAAAAGCTGTTGGGCAGTACAAGCCACAAGGAGAGTGTTTCCACAGACAAAGCAACCCAACAAAGTATCATGATCACCACATTATCTTTTTTCCAGCACACGTTTTTCAGCTTCCTTAATTGTTTCTTCAACTTTCACTATCAACCGAAAGATCCACTGCCACACAATTTTGGAGCTCCAAAAACCCTTCATGATCCACTGCCACACTATTTTGGAGCTCCAAAAACCCTTCATGGTATTGTGTTCACTATAATAATGGCTAACCCCATCCCCTATATCGAATATTCTACACATATTATATTAATTTTAAACAACATTTCCAGTCAACAATTAAAAAATATAGCAGCTATAATTAAAGATTTTGCGGGTTAATTCATGTGCTTAGCCTACTTGGCATAATCCAATTATCAAACCCTGGCTTCAACTTCTTTTCTATGCCTAGCCCCAATTGATTTGAAAAGCTAACCGATCCACGAAGGAATATCAAATTAGTCAATTTAATTTTGATGAGAAACATCCTAATCATTTAAATTAATTGCATTACAGTTTATGGATTACACTAGGATAATTTTTTAATAGAAAATGTCTAATTACAAATATATTAAATATGGTTTTCTCTAGCTGTTTGTTGTCGACC

mRNA sequence

ATGTGTGGACAAAAGCTGTTGGGCAGTACAAGCCACAAGGAGAGTGTTTCCACAGACAAAGCAACCCAACAAAGTATCATGATCACCACATTATCTTTTTTCCAGCACACGTTTTTCAGCTTCCTTAATTGTTTCTTCAACTTTCACTATCAACCGAAAGATCCACTGCCACACAATTTTGGAGCTCCAAAAACCCTTCATGATCCACTGCCACACTATTTTGGAGCTCCAAAAACCCTTCATGGTATTGTGTTCACTATAATAATGGCTAACCCCATCCCCTATATCGAATATTCTACACATATTATATTAATTTTAAACAACATTTCCAGTCAACAATTAAAAAATATAGCAGCTATAATTAAAGATTTTGCGGGTTAA

Coding sequence (CDS)

ATGTGTGGACAAAAGCTGTTGGGCAGTACAAGCCACAAGGAGAGTGTTTCCACAGACAAAGCAACCCAACAAAGTATCATGATCACCACATTATCTTTTTTCCAGCACACGTTTTTCAGCTTCCTTAATTGTTTCTTCAACTTTCACTATCAACCGAAAGATCCACTGCCACACAATTTTGGAGCTCCAAAAACCCTTCATGATCCACTGCCACACTATTTTGGAGCTCCAAAAACCCTTCATGGTATTGTGTTCACTATAATAATGGCTAACCCCATCCCCTATATCGAATATTCTACACATATTATATTAATTTTAAACAACATTTCCAGTCAACAATTAAAAAATATAGCAGCTATAATTAAAGATTTTGCGGGTTAA

Protein sequence

MCGQKLLGSTSHKESVSTDKATQQSIMITTLSFFQHTFFSFLNCFFNFHYQPKDPLPHNFGAPKTLHDPLPHYFGAPKTLHGIVFTIIMANPIPYIEYSTHIILILNNISSQQLKNIAAIIKDFAG*
Homology
[Close]
BLAST of CsaV3_1G010560.1 vs. NCBI nr
Match: KAE8652659.1 (hypothetical protein Csa_014274 [Cucumis sativus])

HSP 1 Score: 258.5 bits (659), Expect = 3.1e-65
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MCGQKLLGSTSHKESVSTDKATQQSIMITTLSFFQHTFFSFLNCFFNFHYQPKDPLPHNF 60
           MCGQKLLGSTSHKESVSTDKATQQSIMITTLSFFQHTFFSFLNCFFNFHYQPKDPLPHNF
Sbjct: 1   MCGQKLLGSTSHKESVSTDKATQQSIMITTLSFFQHTFFSFLNCFFNFHYQPKDPLPHNF 60

Query: 61  GAPKTLHDPLPHYFGAPKTLHGIVFTIIMANPIPYIEYSTHIILILNNISSQQLKNIAAI 120
           GAPKTLHDPLPHYFGAPKTLHGIVFTIIMANPIPYIEYSTHIILILNNISSQQLKNIAAI
Sbjct: 61  GAPKTLHDPLPHYFGAPKTLHGIVFTIIMANPIPYIEYSTHIILILNNISSQQLKNIAAI 120

Query: 121 IKDFAG 127
           IKDFAG
Sbjct: 121 IKDFAG 126

The following BLAST results are available for this feature:
BLAST of CsaV3_1G010560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8652659.13.1e-65100.00hypothetical protein Csa_014274 [Cucumis sativus][more]
BLAST of CsaV3_1G010560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G010560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_1G010560CsaV3_1G010560gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G010560.1.exon1CsaV3_1G010560.1.exon1exon
CsaV3_1G010560.1.exon2CsaV3_1G010560.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_1G010560.1.cds2CsaV3_1G010560.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_1G010560.1CsaV3_1G010560.1-proteinpolypeptide