CsGy7G016715.1 (mRNA) Cucumber (Gy14) v2.1

Overview
NameCsGy7G016715.1
TypemRNA
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTranscription factor UPBEAT1
LocationGy14Chr7: 20256833 .. 20257737 (+)
Sequence length905
RNA-Seq ExpressionCsGy7G016715.1
SyntenyCsGy7G016715.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTCTTTTCTTTTTATTTTTCAATTTTCCCCCAACTTATATTCTCTTTCCTCACCAAACCCATTTCACAAATTCCCCCATATAAAACCCCTCTAGCCTCCTCTACCTTCATCATCCAAAATCTCAATCCCAAACCCCATTTTCCCCTCTCTCTCTCTCTCTCTCTCTCTATTTCTCTAGTTTCTTCACCACAAGTGAAAAAGAAAAGAAAACCAAAAACCAAATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAGGATCATCAAACAATTACACAAGATCGTATCATCGACATCAAAGAGATCAGGAACAACAACTCAAACGATCAATCCATGTGGAAGAAAAATTCAATGAAAGAAGAAGAAGTACAAGAAATTAATAGCAAAGGCAAAGACGACAAAAGCACTTGCAATATTAATACAAGAAGAACAACAAGAAGAAGATCAAGAAGCAATTCATTGATATTGAAGAAGAGATCAAGAAGATCATCATCATCATCATCAGGTAGAATAGAGCAAAGGGTCAACACTTTGAGAAGCCTTGTACCAAACAATGACAACCACAACCACGACGACCAGGATGAAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAAACAGCTGATTACATACTGTCATTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGATCCTTCTTCTTCTATTGATGAGTGAGAGAATTTGAAAGGGAAAAAAAAAAGTTTCATTTTATTTTTTGTTTTCATATATATATTTGTGTTTAATTTGTGTAAAACTTATATCATTATCTCTCTTCTGTAAAGATTGATATATGTGATTTTATATATATCATTCTTTTGCTTTTCTTTTCTTTTTTTGGTTCTTTTTCTC

mRNA sequence

CTTCTCTTTTCTTTTTATTTTTCAATTTTCCCCCAACTTATATTCTCTTTCCTCACCAAACCCATTTCACAAATTCCCCCATATAAAACCCCTCTAGCCTCCTCTACCTTCATCATCCAAAATCTCAATCCCAAACCCCATTTTCCCCTCTCTCTCTCTCTCTCTCTCTCTATTTCTCTAGTTTCTTCACCACAAGTGAAAAAGAAAAGAAAACCAAAAACCAAATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAGGATCATCAAACAATTACACAAGATCGTATCATCGACATCAAAGAGATCAGGAACAACAACTCAAACGATCAATCCATGTGGAAGAAAAATTCAATGAAAGAAGAAGAAGTACAAGAAATTAATAGCAAAGGCAAAGACGACAAAAGCACTTGCAATATTAATACAAGAAGAACAACAAGAAGAAGATCAAGAAGCAATTCATTGATATTGAAGAAGAGATCAAGAAGATCATCATCATCATCATCAGGTAGAATAGAGCAAAGGGTCAACACTTTGAGAAGCCTTGTACCAAACAATGACAACCACAACCACGACGACCAGGATGAAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAAACAGCTGATTACATACTGTCATTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGATCCTTCTTCTTCTATTGATGAGTGAGAGAATTTGAAAGGGAAAAAAAAAAGTTTCATTTTATTTTTTGTTTTCATATATATATTTGTGTTTAATTTGTGTAAAACTTATATCATTATCTCTCTTCTGTAAAGATTGATATATGTGATTTTATATATATCATTCTTTTGCTTTTCTTTTCTTTTTTTGGTTCTTTTTCTC

Coding sequence (CDS)

ATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAGGATCATCAAACAATTACACAAGATCGTATCATCGACATCAAAGAGATCAGGAACAACAACTCAAACGATCAATCCATGTGGAAGAAAAATTCAATGAAAGAAGAAGAAGTACAAGAAATTAATAGCAAAGGCAAAGACGACAAAAGCACTTGCAATATTAATACAAGAAGAACAACAAGAAGAAGATCAAGAAGCAATTCATTGATATTGAAGAAGAGATCAAGAAGATCATCATCATCATCATCAGGTAGAATAGAGCAAAGGGTCAACACTTTGAGAAGCCTTGTACCAAACAATGACAACCACAACCACGACGACCAGGATGAAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAAACAGCTGATTACATACTGTCATTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGATCCTTCTTCTTCTATTGATGAGTGA

Protein sequence

MGVSQETLLQIQLNMEDHQTITQDRIIDIKEIRNNNSNDQSMWKKNSMKEEEVQEINSKGKDDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSGRIEQRVNTLRSLVPNNDNHNHDDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE*
Homology
BLAST of CsGy7G016715.1 vs. NCBI nr
Match: XP_031744332.1 (transcription factor UPBEAT1 [Cucumis sativus] >KGN45028.1 hypothetical protein Csa_016025 [Cucumis sativus])

HSP 1 Score: 296 bits (758), Expect = 1.68e-100
Identity = 165/168 (98.21%), Postives = 165/168 (98.21%), Query Frame = 0

Query: 1   MGVSQETLLQIQLNMEDHQTITQDRIIDIKEIRNNNSNDQSMWKKNSMKEEEVQEINSKG 60
           MGVSQETLLQIQLNMEDHQT TQDRIIDIKEIRNNNSNDQS WKKNSMKEEEVQEINSKG
Sbjct: 1   MGVSQETLLQIQLNMEDHQT-TQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKG 60

Query: 61  KDDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSGRIEQRVNTLRSLVPNNDNHNH 120
           KDDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSS RIEQRVNTLRSLVPNNDNHNH
Sbjct: 61  KDDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNH 120

Query: 121 DDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 168
           DDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE
Sbjct: 121 DDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 167

BLAST of CsGy7G016715.1 vs. NCBI nr
Match: KAA0046707.1 (transcription factor UPBEAT1 [Cucumis melo var. makuwa] >TYK18243.1 transcription factor UPBEAT1 [Cucumis melo var. makuwa])

HSP 1 Score: 237 bits (605), Expect = 4.08e-77
Identity = 151/176 (85.80%), Postives = 156/176 (88.64%), Query Frame = 0

Query: 1   MGVSQETLLQIQLNMEDHQTITQDRIIDIKEIRNNNSNDQSMWKKNSMKEE----EVQEI 60
           MGVSQETLLQIQLNMEDH+T TQDRII IKEIRN++SNDQS+WKK SMKEE    E QEI
Sbjct: 1   MGVSQETLLQIQLNMEDHKT-TQDRIIIIKEIRNDSSNDQSIWKKKSMKEEVGEEEDQEI 60

Query: 61  NSKGKDDKSTCN-INTRRTTRRRSRSNSLILKKRSRRSSSSSSG--RIEQRVNTLRSLVP 120
           NSKGKD KSTCN INTRRTTRRRSRSNSLILKKRSRRSSSSSS   RIEQRVN LR+LVP
Sbjct: 61  NSKGKD-KSTCNNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSTSRIEQRVNILRNLVP 120

Query: 121 NNDNHNHDDQDESCV-GSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 168
           NNDNH   D DESC  GSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE
Sbjct: 121 NNDNHQ--DDDESCTAGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 172

BLAST of CsGy7G016715.1 vs. NCBI nr
Match: KAG6593250.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 104 bits (259), Expect = 3.60e-25
Identity = 80/166 (48.19%), Postives = 100/166 (60.24%), Query Frame = 0

Query: 1   MGVSQETLLQIQLNMEDHQTITQDRIIDIKEIRNNNSNDQSMWKKNSMKEEEVQEINSKG 60
           MGV  ETLL +QLNM++                   S D++  ++   ++E+ ++  +  
Sbjct: 1   MGVYPETLLLVQLNMKEP------------------SQDETSMEEQQEQQEQQEQQEAIA 60

Query: 61  KDDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSGRIEQRVNTLRSLVPN--NDNH 120
           K              RRR  SNSL+ K+RSR     SS RIEQRV+TLR+LVPN  N+N+
Sbjct: 61  KS-----------FNRRRRSSNSLMKKRRSR-----SSTRIEQRVSTLRNLVPNMNNNNN 120

Query: 121 NHDDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSS 164
           NH    ESCVGSLEQLFTQTADYILSLQTRVR MK LVDVLS  S+
Sbjct: 121 NH----ESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSN 128

BLAST of CsGy7G016715.1 vs. NCBI nr
Match: KAG7025601.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103 bits (256), Expect = 8.85e-25
Identity = 82/166 (49.40%), Postives = 100/166 (60.24%), Query Frame = 0

Query: 1   MGVSQETLLQIQLNMEDHQTITQDRIIDIKEIRNNNSNDQSMWKKNSMKEEEVQEINSKG 60
           MGV  ETLL +QLNM++                   S D++     SM+E++ ++  +  
Sbjct: 1   MGVYPETLLLVQLNMKEP------------------SQDET-----SMEEQQQEQQEAIA 60

Query: 61  KDDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSGRIEQRVNTLRSLVPN--NDNH 120
           K              RRR  SNSL+ K+RSR     SS RIEQRV+TLR+LVPN  N+N+
Sbjct: 61  KS-----------FNRRRRSSNSLMKKRRSR-----SSTRIEQRVSTLRNLVPNMNNNNN 120

Query: 121 NHDDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSS 164
           NH    ESCVGSLEQLFTQTADYILSLQTRVR MK LVDVLS  S+
Sbjct: 121 NH----ESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSN 123

BLAST of CsGy7G016715.1 vs. NCBI nr
Match: KAG6575752.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.9 bits (237), Expect = 6.58e-22
Identity = 82/166 (49.40%), Postives = 100/166 (60.24%), Query Frame = 0

Query: 1   MGVSQETLLQIQLNMEDHQTITQDRIIDIKEIRNNNSNDQSMWKKNSMKEEEVQEINSKG 60
           MG    TLL +QLNME+    TQD II+            S+ KK+SM+EE+        
Sbjct: 1   MGAFPNTLLLLQLNMEEP---TQDIIIN-----------GSILKKSSMEEEQ-------- 60

Query: 61  KDDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSGRIEQRVNTLRSLVPNNDNHNH 120
           K++KS           RR R  S  L K++RRSS+    RI QRV TLR+LVPN +N N 
Sbjct: 61  KNNKSC----------RRRRRTSKSLAKKTRRSST----RIVQRVTTLRNLVPNMNNDND 120

Query: 121 DDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSI 166
           +D ++   GSLEQLFT TADYILSLQTRVR M+TLVDVLS  SS I
Sbjct: 121 NDNND---GSLEQLFTHTADYILSLQTRVRFMRTLVDVLSGSSSRI 127

BLAST of CsGy7G016715.1 vs. ExPASy TrEMBL
Match: A0A0A0K6D9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1)

HSP 1 Score: 296 bits (758), Expect = 8.16e-101
Identity = 165/168 (98.21%), Postives = 165/168 (98.21%), Query Frame = 0

Query: 1   MGVSQETLLQIQLNMEDHQTITQDRIIDIKEIRNNNSNDQSMWKKNSMKEEEVQEINSKG 60
           MGVSQETLLQIQLNMEDHQT TQDRIIDIKEIRNNNSNDQS WKKNSMKEEEVQEINSKG
Sbjct: 1   MGVSQETLLQIQLNMEDHQT-TQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKG 60

Query: 61  KDDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSGRIEQRVNTLRSLVPNNDNHNH 120
           KDDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSS RIEQRVNTLRSLVPNNDNHNH
Sbjct: 61  KDDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNH 120

Query: 121 DDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 168
           DDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE
Sbjct: 121 DDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 167

BLAST of CsGy7G016715.1 vs. ExPASy TrEMBL
Match: A0A5A7TXU1 (Transcription factor UPBEAT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001830 PE=4 SV=1)

HSP 1 Score: 237 bits (605), Expect = 1.97e-77
Identity = 151/176 (85.80%), Postives = 156/176 (88.64%), Query Frame = 0

Query: 1   MGVSQETLLQIQLNMEDHQTITQDRIIDIKEIRNNNSNDQSMWKKNSMKEE----EVQEI 60
           MGVSQETLLQIQLNMEDH+T TQDRII IKEIRN++SNDQS+WKK SMKEE    E QEI
Sbjct: 1   MGVSQETLLQIQLNMEDHKT-TQDRIIIIKEIRNDSSNDQSIWKKKSMKEEVGEEEDQEI 60

Query: 61  NSKGKDDKSTCN-INTRRTTRRRSRSNSLILKKRSRRSSSSSSG--RIEQRVNTLRSLVP 120
           NSKGKD KSTCN INTRRTTRRRSRSNSLILKKRSRRSSSSSS   RIEQRVN LR+LVP
Sbjct: 61  NSKGKD-KSTCNNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSTSRIEQRVNILRNLVP 120

Query: 121 NNDNHNHDDQDESCV-GSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 168
           NNDNH   D DESC  GSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE
Sbjct: 121 NNDNHQ--DDDESCTAGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 172

BLAST of CsGy7G016715.1 vs. ExPASy TrEMBL
Match: A0A1R3GQR1 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_24243 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.79e-07
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 0

Query: 64  KSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSGR------IEQRVNTLRSLVPNNDN 123
           K +C    R +   R R  S+++K+R R+++     R      IE+++ TL+ L+PNND 
Sbjct: 22  KVSCRRKVRNSWSCRRRPRSIMMKRRPRQAADEEGSRRPMMNPIEKKIKTLKKLIPNND- 81

Query: 124 HNHDDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 168
                 DE     L+ LF +TADYILSLQ RV++M+ +V VL+  S S DE
Sbjct: 82  ------DELEPMGLDGLFRETADYILSLQMRVKVMQIMVKVLTG-SESDDE 124

BLAST of CsGy7G016715.1 vs. ExPASy TrEMBL
Match: A0A251TGE3 (Putative myc-type, basic helix-loop-helix (BHLH) domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0285031 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.12e-07
Identity = 54/150 (36.00%), Postives = 87/150 (58.00%), Query Frame = 0

Query: 18  HQTITQDRIIDIKEIRNNNSNDQSMWKKNSMKEEEVQEINSKGKDDKSTCNINTRRTTRR 77
           HQT+    +++IK   NNNS+    WKK  + E + +     G+  K   +  T++T R 
Sbjct: 7   HQTLGD--LLEIKSKCNNNSSRNLFWKK--LLEAQAKMAEKGGQ--KHHSHSATKKTRRT 66

Query: 78  RSRSNSL--ILKKRSRRSSSSSSGR---IEQRVNTLRSLVPNNDNHNHDDQDESCVGSLE 137
            +R+N+L  I ++R+RR+    S R   IE++V TL+ L+PN +         S VG L+
Sbjct: 67  PTRNNTLKMIKRRRARRAGQGGSRRSTMIEKKVRTLKKLIPNGN---------SSVG-LD 126

Query: 138 QLFTQTADYILSLQTRVRLMKTLVDVLSDP 162
            LF+ TA+YI +LQ RV +M+ +V+ LS+P
Sbjct: 127 GLFSDTAEYISNLQMRVSIMQAVVNALSNP 140

BLAST of CsGy7G016715.1 vs. ExPASy TrEMBL
Match: I1NHA0 (BHLH transcription factor OS=Glycine max OX=3847 GN=100794627 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.68e-06
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 101 IEQRVNTLRSLVPNNDNHNHDDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLS 160
           I +RV TL+SLVPN+D+             L+ LF QTADYILSLQTRVR+M+ +V VL+
Sbjct: 75  IRRRVRTLKSLVPNSDSL-----------GLDGLFRQTADYILSLQTRVRVMQVMVKVLT 123

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_031744332.11.68e-10098.21transcription factor UPBEAT1 [Cucumis sativus] >KGN45028.1 hypothetical protein ... [more]
KAA0046707.14.08e-7785.80transcription factor UPBEAT1 [Cucumis melo var. makuwa] >TYK18243.1 transcriptio... [more]
KAG6593250.13.60e-2548.19Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7025601.18.85e-2549.40Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperm... [more]
KAG6575752.16.58e-2249.40Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
A0A0A0K6D98.16e-10198.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1[more]
A0A5A7TXU11.97e-7785.80Transcription factor UPBEAT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1R3GQR15.79e-0738.74Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_24243 PE=4 ... [more]
A0A251TGE38.12e-0736.00Putative myc-type, basic helix-loop-helix (BHLH) domain-containing protein OS=He... [more]
I1NHA01.68e-0653.33BHLH transcription factor OS=Glycine max OX=3847 GN=100794627 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 71..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..105
NoneNo IPR availablePANTHERPTHR33124:SF39TRANSCRIPTION FACTOR UPBEAT1coord: 13..161
IPR044660Transcription factor IBH1-likePANTHERPTHR33124TRANSCRIPTION FACTOR IBH1-LIKE 1coord: 13..161

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy7G016715CsGy7G016715gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy7G016715.1.utr5p1CsGy7G016715.1.utr5p1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy7G016715.1.exon1CsGy7G016715.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
cds.CsGy7G016715.1cds.CsGy7G016715.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy7G016715.1.utr3p1CsGy7G016715.1.utr3p1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy7G016715.1CsGy7G016715.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated