CsGy7G016715.1 (mRNA) Cucumber (Gy14) v2.1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTCTCTTTTCTTTTTATTTTTCAATTTTCCCCCAACTTATATTCTCTTTCCTCACCAAACCCATTTCACAAATTCCCCCATATAAAACCCCTCTAGCCTCCTCTACCTTCATCATCCAAAATCTCAATCCCAAACCCCATTTTCCCCTCTCTCTCTCTCTCTCTCTCTCTATTTCTCTAGTTTCTTCACCACAAGTGAAAAAGAAAAGAAAACCAAAAACCAAATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAGGATCATCAAACAATTACACAAGATCGTATCATCGACATCAAAGAGATCAGGAACAACAACTCAAACGATCAATCCATGTGGAAGAAAAATTCAATGAAAGAAGAAGAAGTACAAGAAATTAATAGCAAAGGCAAAGACGACAAAAGCACTTGCAATATTAATACAAGAAGAACAACAAGAAGAAGATCAAGAAGCAATTCATTGATATTGAAGAAGAGATCAAGAAGATCATCATCATCATCATCAGGTAGAATAGAGCAAAGGGTCAACACTTTGAGAAGCCTTGTACCAAACAATGACAACCACAACCACGACGACCAGGATGAAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAAACAGCTGATTACATACTGTCATTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGATCCTTCTTCTTCTATTGATGAGTGAGAGAATTTGAAAGGGAAAAAAAAAAGTTTCATTTTATTTTTTGTTTTCATATATATATTTGTGTTTAATTTGTGTAAAACTTATATCATTATCTCTCTTCTGTAAAGATTGATATATGTGATTTTATATATATCATTCTTTTGCTTTTCTTTTCTTTTTTTGGTTCTTTTTCTC CTTCTCTTTTCTTTTTATTTTTCAATTTTCCCCCAACTTATATTCTCTTTCCTCACCAAACCCATTTCACAAATTCCCCCATATAAAACCCCTCTAGCCTCCTCTACCTTCATCATCCAAAATCTCAATCCCAAACCCCATTTTCCCCTCTCTCTCTCTCTCTCTCTCTCTATTTCTCTAGTTTCTTCACCACAAGTGAAAAAGAAAAGAAAACCAAAAACCAAATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAGGATCATCAAACAATTACACAAGATCGTATCATCGACATCAAAGAGATCAGGAACAACAACTCAAACGATCAATCCATGTGGAAGAAAAATTCAATGAAAGAAGAAGAAGTACAAGAAATTAATAGCAAAGGCAAAGACGACAAAAGCACTTGCAATATTAATACAAGAAGAACAACAAGAAGAAGATCAAGAAGCAATTCATTGATATTGAAGAAGAGATCAAGAAGATCATCATCATCATCATCAGGTAGAATAGAGCAAAGGGTCAACACTTTGAGAAGCCTTGTACCAAACAATGACAACCACAACCACGACGACCAGGATGAAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAAACAGCTGATTACATACTGTCATTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGATCCTTCTTCTTCTATTGATGAGTGAGAGAATTTGAAAGGGAAAAAAAAAAGTTTCATTTTATTTTTTGTTTTCATATATATATTTGTGTTTAATTTGTGTAAAACTTATATCATTATCTCTCTTCTGTAAAGATTGATATATGTGATTTTATATATATCATTCTTTTGCTTTTCTTTTCTTTTTTTGGTTCTTTTTCTC ATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAGGATCATCAAACAATTACACAAGATCGTATCATCGACATCAAAGAGATCAGGAACAACAACTCAAACGATCAATCCATGTGGAAGAAAAATTCAATGAAAGAAGAAGAAGTACAAGAAATTAATAGCAAAGGCAAAGACGACAAAAGCACTTGCAATATTAATACAAGAAGAACAACAAGAAGAAGATCAAGAAGCAATTCATTGATATTGAAGAAGAGATCAAGAAGATCATCATCATCATCATCAGGTAGAATAGAGCAAAGGGTCAACACTTTGAGAAGCCTTGTACCAAACAATGACAACCACAACCACGACGACCAGGATGAAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAAACAGCTGATTACATACTGTCATTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGATCCTTCTTCTTCTATTGATGAGTGA MGVSQETLLQIQLNMEDHQTITQDRIIDIKEIRNNNSNDQSMWKKNSMKEEEVQEINSKGKDDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSGRIEQRVNTLRSLVPNNDNHNHDDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE* Homology
BLAST of CsGy7G016715.1 vs. NCBI nr
Match: XP_031744332.1 (transcription factor UPBEAT1 [Cucumis sativus] >KGN45028.1 hypothetical protein Csa_016025 [Cucumis sativus]) HSP 1 Score: 296 bits (758), Expect = 1.68e-100 Identity = 165/168 (98.21%), Postives = 165/168 (98.21%), Query Frame = 0
BLAST of CsGy7G016715.1 vs. NCBI nr
Match: KAA0046707.1 (transcription factor UPBEAT1 [Cucumis melo var. makuwa] >TYK18243.1 transcription factor UPBEAT1 [Cucumis melo var. makuwa]) HSP 1 Score: 237 bits (605), Expect = 4.08e-77 Identity = 151/176 (85.80%), Postives = 156/176 (88.64%), Query Frame = 0
BLAST of CsGy7G016715.1 vs. NCBI nr
Match: KAG6593250.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 104 bits (259), Expect = 3.60e-25 Identity = 80/166 (48.19%), Postives = 100/166 (60.24%), Query Frame = 0
BLAST of CsGy7G016715.1 vs. NCBI nr
Match: KAG7025601.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 103 bits (256), Expect = 8.85e-25 Identity = 82/166 (49.40%), Postives = 100/166 (60.24%), Query Frame = 0
BLAST of CsGy7G016715.1 vs. NCBI nr
Match: KAG6575752.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 95.9 bits (237), Expect = 6.58e-22 Identity = 82/166 (49.40%), Postives = 100/166 (60.24%), Query Frame = 0
BLAST of CsGy7G016715.1 vs. ExPASy TrEMBL
Match: A0A0A0K6D9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1) HSP 1 Score: 296 bits (758), Expect = 8.16e-101 Identity = 165/168 (98.21%), Postives = 165/168 (98.21%), Query Frame = 0
BLAST of CsGy7G016715.1 vs. ExPASy TrEMBL
Match: A0A5A7TXU1 (Transcription factor UPBEAT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001830 PE=4 SV=1) HSP 1 Score: 237 bits (605), Expect = 1.97e-77 Identity = 151/176 (85.80%), Postives = 156/176 (88.64%), Query Frame = 0
BLAST of CsGy7G016715.1 vs. ExPASy TrEMBL
Match: A0A1R3GQR1 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_24243 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 5.79e-07 Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 0
BLAST of CsGy7G016715.1 vs. ExPASy TrEMBL
Match: A0A251TGE3 (Putative myc-type, basic helix-loop-helix (BHLH) domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0285031 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 8.12e-07 Identity = 54/150 (36.00%), Postives = 87/150 (58.00%), Query Frame = 0
BLAST of CsGy7G016715.1 vs. ExPASy TrEMBL
Match: I1NHA0 (BHLH transcription factor OS=Glycine max OX=3847 GN=100794627 PE=2 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 1.68e-06 Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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