CsGy7G009930.2 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G009930.2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic
Location	Gy14Chr7: 12555433 .. 12556681 (+)
Sequence length	621
RNA-Seq Expression	CsGy7G009930.2
Synteny	CsGy7G009930.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCATTTATTCATGCAAAGATCTGCCCTACGACTATTTCAACATTGGATAGAAGCTTAATAAGTGAATATGGTCGTAAGTAACATCTCTTGTTTGTAAGCCCGTTAGTTACCTTCTGTGTTGAATCTGAAACGTTGCCTAATATATTTGCAAGTTATTTTTCTTAGCTGTCGTCATTTATAACATGTCTTAAGATTCTTTTGATGCTTCAAACATTCAAAATGTATTGCAGCAGAGGCTTTATTCCTGAATGCCGTATCATTTATACATATTATAGGTCAAAACTCATTTTGAATTAGTGATAATCTAGTTCTTTCTTTCCAACCATTTGGTCCGTCCTTCTACTATATTAATTTATAAATTGATTGGAGATCGAGTTTGTTTACAAACTATAAAGACTAAACCATTATATTATAAAATCTTGAAACTTAATTTTTGAAAAGATTTGGAAGTATTAAGACTAGTTAAAGTTTATGGATTGAATTATTCCATGTAGGAAAGTTTAGGACGAGTATTTTTTAACCTATTTACAATTCTCTTGTTCTGAATCTGAATGCACCTGGACATAAGCTTCATTCTTGTACTATTTCTTTATTGACTGTCTTATGCAACATAACAGGTAAACTACCATCCAGGTCTCGAGTAGTGCTTCCATATCAAGAAGTTTGTAGACGTCATTTGGTATGGAATGGCATGTCATTGGTTGTGTTTCTCACATTTAACAATGGATTGACACCATCTTCGGCCCAGGCCGAAGAAATGCCAAATAACATGGAGGAAGAGGATAATGGAGTTATCGGGACGATCAAATCAATATTTGATCCAAATGAAAAAACCAAATCAGGGAAAATATTGCCAAAGGCTTACTTGAAGTCTGCAAGGGAGGTGGTGAAAACGCTGCGTGAGTCATTGCAGGAAGACCCCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCCATTCGTGACTATTTAAGCAATTGGTTGGGGAAACAAACAGTTGTTCAAGAGGTATGACAAGGGAAAAAAAGATGATGTTACTTCATGAATGATGATCGTAAGGACTTTATAATAACATCGCTCACTCACGTGCAGGAATCTTACGTTGTATTAGAGAAAGCAATTAGGTCGTTGGCAGGATTTTATGCAAAGGCTGGGCCATCTGCGCCACTGCCAGAAGCGGTTAAATCTGATATTCTGGATGATTTGGATAAGGTTGAAGAATCCTTGTAA

mRNA sequence

ATGGCTGCATTTATTCATGCAAAGATCTGCCCTACGACTATTTCAACATTGGATAGAAGCTTAATAAGTGAATATGGTCGTAAACTACCATCCAGGTCTCGAGTAGTGCTTCCATATCAAGAAGTTTGTAGACGTCATTTGGTATGGAATGGCATGTCATTGGTTGTGTTTCTCACATTTAACAATGGATTGACACCATCTTCGGCCCAGGCCGAAGAAATGCCAAATAACATGGAGGAAGAGGATAATGGAGTTATCGGGACGATCAAATCAATATTTGATCCAAATGAAAAAACCAAATCAGGGAAAATATTGCCAAAGGCTTACTTGAAGTCTGCAAGGGAGGTGGTGAAAACGCTGCGTGAGTCATTGCAGGAAGACCCCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCCATTCGTGACTATTTAAGCAATTGGTTGGGGAAACAAACAGTTGTTCAAGAGGAATCTTACGTTGTATTAGAGAAAGCAATTAGGTCGTTGGCAGGATTTTATGCAAAGGCTGGGCCATCTGCGCCACTGCCAGAAGCGGTTAAATCTGATATTCTGGATGATTTGGATAAGGTTGAAGAATCCTTGTAA

Coding sequence (CDS)

ATGGCTGCATTTATTCATGCAAAGATCTGCCCTACGACTATTTCAACATTGGATAGAAGCTTAATAAGTGAATATGGTCGTAAACTACCATCCAGGTCTCGAGTAGTGCTTCCATATCAAGAAGTTTGTAGACGTCATTTGGTATGGAATGGCATGTCATTGGTTGTGTTTCTCACATTTAACAATGGATTGACACCATCTTCGGCCCAGGCCGAAGAAATGCCAAATAACATGGAGGAAGAGGATAATGGAGTTATCGGGACGATCAAATCAATATTTGATCCAAATGAAAAAACCAAATCAGGGAAAATATTGCCAAAGGCTTACTTGAAGTCTGCAAGGGAGGTGGTGAAAACGCTGCGTGAGTCATTGCAGGAAGACCCCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAAGAATCCATTCGTGACTATTTAAGCAATTGGTTGGGGAAACAAACAGTTGTTCAAGAGGAATCTTACGTTGTATTAGAGAAAGCAATTAGGTCGTTGGCAGGATTTTATGCAAAGGCTGGGCCATCTGCGCCACTGCCAGAAGCGGTTAAATCTGATATTCTGGATGATTTGGATAAGGTTGAAGAATCCTTGTAA

Protein sequence

MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLDKVEESL*

Homology

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BLAST of CsGy7G009930.2 vs. ExPASy Swiss-Prot
Match: Q9ZVZ9 (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.7e-47
Identity = 97/140 (69.29%), Postives = 117/140 (83.57%), Query Frame = 0


Query: 67  SSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTLRESLQE 126
           S  QA+     ++E + GV+G  K++FDPNE+TKSGK LPKAYLKSAREVVKT+RESL+E
Sbjct: 61  SGLQAQASEEKLDEGE-GVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKE 120

Query: 127 DPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAP 186
           +PKD AKFRR+ADAAKESIRDYLSNW G++TV  EESYV LE  IR+LA FY+KAGPSAP
Sbjct: 121 NPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAP 180

Query: 187 LPEAVKSDILDDLDKVEESL 207
           LP+ VK++ILDDL+K EE L
Sbjct: 181 LPDEVKTEILDDLNKAEEFL 199

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BLAST of CsGy7G009930.2 vs. ExPASy Swiss-Prot
Match: P74367 (Photosystem II lipoprotein Psb27 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=psb27 PE=1 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 9.4e-06
Identity = 32/106 (30.19%), Postives = 55/106 (51.89%), Query Frame = 0


Query: 101 SGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQ 160
           SG  L   Y +    V+ TLRE++ + P+D    +   D A+  I DY+S +  K     
Sbjct: 27  SGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGG 86

Query: 161 EESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLDKVEESL 207
            +S+  ++ A+ SLAG+Y   G + P+PE +K  +  +  + E S+
Sbjct: 87  LKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAERSI 130

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BLAST of CsGy7G009930.2 vs. ExPASy Swiss-Prot
Match: Q9LR64 (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 6.8e-04
Identity = 27/102 (26.47%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 109 YLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGK----QTVVQEESY 168
           Y+K    V+  +R +L     D       ADA  E +R+  ++W+ K    + ++ + S+
Sbjct: 74  YIKDTSAVISKVRSTLSMQKTD----PNVADAVAE-LREASNSWVAKYRKEKALLGKASF 133

Query: 169 VVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLDKVEESL 207
             +  A+ +++G Y   GP+AP+P   K+ IL++++  E++L
Sbjct: 134 RDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL 170

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BLAST of CsGy7G009930.2 vs. NCBI nr
Match: XP_011659022.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X1 [Cucumis sativus] >KGN44248.1 hypothetical protein Csa_016399 [Cucumis sativus])

HSP 1 Score: 402 bits (1034), Expect = 2.59e-141
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60
           MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF
Sbjct: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60

Query: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120
           NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206
           AGPSAPLPEAVKSDILDDLDKVEESL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206

[Close]

BLAST of CsGy7G009930.2 vs. NCBI nr
Match: XP_011659023.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 396 bits (1017), Expect = 9.78e-139
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60
           MAAFIHAKICPTTISTLDRSLISEYG KLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF
Sbjct: 1   MAAFIHAKICPTTISTLDRSLISEYG-KLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60

Query: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120
           NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206
           AGPSAPLPEAVKSDILDDLDKVEESL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKVEESL 205

[Close]

BLAST of CsGy7G009930.2 vs. NCBI nr
Match: XP_008447146.1 (PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo] >XP_008447147.1 PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo] >XP_008447148.1 PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo])

HSP 1 Score: 378 bits (971), Expect = 1.04e-131
Identity = 193/206 (93.69%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60
           MAAFI AKICP TISTLDRSLISE GRKLPSRS+V LP QE+CRRHLVWNGMSLVVFLTF
Sbjct: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60

Query: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120
           NNGLTPSSA AEEMPNNMEEEDNGVIGTIKSIFDPNE+TKSGK+LPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQEESYVVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206
           AGPSAPLPEAVKSDILDDLDK E SL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206

[Close]

BLAST of CsGy7G009930.2 vs. NCBI nr
Match: KAA0040790.1 (photosystem II D1 precursor processing protein PSB27-H2 [Cucumis melo var. makuwa] >TYK17771.1 photosystem II D1 precursor processing protein PSB27-H2 [Cucumis melo var. makuwa])

HSP 1 Score: 376 bits (966), Expect = 6.04e-131
Identity = 192/206 (93.20%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60
           MAAFI AKICP TI TLDRSLISE GRKLPSRS+V LP QE+CRRHLVWNGMSLVVFLTF
Sbjct: 1   MAAFIQAKICPRTIPTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60

Query: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120
           NNGLTPSSA AEEMPNNMEEEDNGVIGTIKSIFDPNE+TKSGK+LPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQEESYVVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206
           AGPSAPLPEAVKSDILDDLDK E SL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206

[Close]

BLAST of CsGy7G009930.2 vs. NCBI nr
Match: XP_038875361.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida] >XP_038875362.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida])

HSP 1 Score: 346 bits (888), Expect = 4.50e-119
Identity = 182/206 (88.35%), Postives = 193/206 (93.69%), Query Frame = 0


Query: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60
           MAAFI A ICPTTISTLDR+L SE G KL SRS+VVLP QEVCRRHL+ +GMSLVVFLT 
Sbjct: 1   MAAFIQANICPTTISTLDRNLKSENGHKLRSRSQVVLPSQEVCRRHLMCSGMSLVVFLTC 60

Query: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120
           NNGLTPSSA+AEE PN+ EEEDNGVIGTIKSIFDPNEKTKSGK+LPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSARAEETPND-EEEDNGVIGTIKSIFDPNEKTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG++TVV+EESYVVLEKAI+SLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQRTVVREESYVVLEKAIKSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206
           AGPSAPLPEAVKSDILDDLDK EE L
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEEFL 205

[Close]

BLAST of CsGy7G009930.2 vs. ExPASy TrEMBL
Match: A0A0A0K400 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G234690 PE=3 SV=1)

HSP 1 Score: 402 bits (1034), Expect = 1.26e-141
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60
           MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF
Sbjct: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60

Query: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120
           NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206
           AGPSAPLPEAVKSDILDDLDKVEESL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206

[Close]

BLAST of CsGy7G009930.2 vs. ExPASy TrEMBL
Match: A0A1S3BG68 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489666 PE=3 SV=1)

HSP 1 Score: 378 bits (971), Expect = 5.05e-132
Identity = 193/206 (93.69%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60
           MAAFI AKICP TISTLDRSLISE GRKLPSRS+V LP QE+CRRHLVWNGMSLVVFLTF
Sbjct: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60

Query: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120
           NNGLTPSSA AEEMPNNMEEEDNGVIGTIKSIFDPNE+TKSGK+LPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQEESYVVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206
           AGPSAPLPEAVKSDILDDLDK E SL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206

[Close]

BLAST of CsGy7G009930.2 vs. ExPASy TrEMBL
Match: A0A5D3D0K6 (Photosystem II D1 processing protein PSB27-H2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00120 PE=3 SV=1)

HSP 1 Score: 376 bits (966), Expect = 2.92e-131
Identity = 192/206 (93.20%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60
           MAAFI AKICP TI TLDRSLISE GRKLPSRS+V LP QE+CRRHLVWNGMSLVVFLTF
Sbjct: 1   MAAFIQAKICPRTIPTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60

Query: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120
           NNGLTPSSA AEEMPNNMEEEDNGVIGTIKSIFDPNE+TKSGK+LPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQEESYVVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206
           AGPSAPLPEAVKSDILDDLDK E SL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206

[Close]

BLAST of CsGy7G009930.2 vs. ExPASy TrEMBL
Match: A0A6J1H448 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111459969 PE=3 SV=1)

HSP 1 Score: 325 bits (834), Expect = 3.67e-111
Identity = 171/206 (83.01%), Postives = 182/206 (88.35%), Query Frame = 0


Query: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60
           M AFI AKICP TISTLDR + SE G KL SRS+VVLP QE+CRR L+ NGMS V FLTF
Sbjct: 1   MTAFIQAKICPATISTLDR-ISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTF 60

Query: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120
           NN LTP  A+AEEMPN+ EEE+NGVIGTIKSIFDPNE+TKSGK+LPKAYLKSAREVVKTL
Sbjct: 61  NNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180
           RESLQED KDGAKFRRTADAAKESIRDYL NWLG+Q VVQEESY VLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206
           AGPSAPLPE VKSDIL+DLDK EE L
Sbjct: 181 AGPSAPLPEDVKSDILNDLDKAEEFL 205

[Close]

BLAST of CsGy7G009930.2 vs. ExPASy TrEMBL
Match: A0A6J1CCV0 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009571 PE=3 SV=1)

HSP 1 Score: 320 bits (821), Expect = 3.63e-109
Identity = 166/206 (80.58%), Postives = 180/206 (87.38%), Query Frame = 0


Query: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60
           MAAF+ AKICP T S+LDR   SE G KL SRS+VVLP QEVCRR L+ NGMSLVVFL F
Sbjct: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60

Query: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120
           NNG  P  A+AEE PN+ +EEDNGV+G IKSIFDPNE+TKSGK+LPKAYLKSARE+VKTL
Sbjct: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180
           RES+QEDPKDGAKFRRTADAAKESIRDYLSNWLG+QTV QEESY  LEKAIRSLA FYAK
Sbjct: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206
           AGPSAPLPEAVKSDIL+DLDK EE L
Sbjct: 181 AGPSAPLPEAVKSDILNDLDKAEEFL 206

[Close]

BLAST of CsGy7G009930.2 vs. TAIR 10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related )

HSP 1 Score: 190.7 bits (483), Expect = 1.2e-48
Identity = 97/140 (69.29%), Postives = 117/140 (83.57%), Query Frame = 0


Query: 67  SSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTLRESLQE 126
           S  QA+     ++E + GV+G  K++FDPNE+TKSGK LPKAYLKSAREVVKT+RESL+E
Sbjct: 61  SGLQAQASEEKLDEGE-GVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKE 120

Query: 127 DPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAP 186
           +PKD AKFRR+ADAAKESIRDYLSNW G++TV  EESYV LE  IR+LA FY+KAGPSAP
Sbjct: 121 NPKDNAKFRRSADAAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAP 180

Query: 187 LPEAVKSDILDDLDKVEESL 207
           LP+ VK++ILDDL+K EE L
Sbjct: 181 LPDEVKTEILDDLNKAEEFL 199

[Close]

BLAST of CsGy7G009930.2 vs. TAIR 10
Match: AT1G03600.1 (photosystem II family protein )

HSP 1 Score: 45.8 bits (107), Expect = 4.8e-05
Identity = 27/102 (26.47%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 109 YLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGK----QTVVQEESY 168
           Y+K    V+  +R +L     D       ADA  E +R+  ++W+ K    + ++ + S+
Sbjct: 74  YIKDTSAVISKVRSTLSMQKTD----PNVADAVAE-LREASNSWVAKYRKEKALLGKASF 133

Query: 169 VVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLDKVEESL 207
             +  A+ +++G Y   GP+AP+P   K+ IL++++  E++L
Sbjct: 134 RDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL 170

The following BLAST results are available for this feature:

BLAST of CsGy7G009930.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVZ9	1.7e-47	69.29	Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid...	[more]
P74367	9.4e-06	30.19	Photosystem II lipoprotein Psb27 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)...	[more]
Q9LR64	6.8e-04	26.47	Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX...	[more]

BLAST of CsGy7G009930.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659022.1	2.59e-141	100.00	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X...	[more]
XP_011659023.1	9.78e-139	99.51	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X...	[more]
XP_008447146.1	1.04e-131	93.69	PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplasti...	[more]
KAA0040790.1	6.04e-131	93.20	photosystem II D1 precursor processing protein PSB27-H2 [Cucumis melo var. makuw...	[more]
XP_038875361.1	4.50e-119	88.35	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincas...	[more]

BLAST of CsGy7G009930.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K400	1.26e-141	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G234690 PE=3 SV=1	[more]
A0A1S3BG68	5.05e-132	93.69	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucumi...	[more]
A0A5D3D0K6	2.92e-131	93.20	Photosystem II D1 processing protein PSB27-H2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1H448	3.67e-111	83.01	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucurb...	[more]
A0A6J1CCV0	3.63e-109	80.58	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Momord...	[more]

BLAST of CsGy7G009930.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05385.1	1.2e-48	69.29	photosystem II 11 kDa protein-related	[more]
AT1G03600.1	4.8e-05	26.47	photosystem II family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025585	Photosystem II Pbs27	PFAM	PF13326	PSII_Pbs27	coord: 44..206 e-value: 7.3E-47 score: 159.2
IPR025585	Photosystem II Pbs27	PANTHER	PTHR34041	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 28..206
IPR025585	Photosystem II Pbs27	HAMAP	MF_01481	PSII_Psb27	coord: 80..206 score: 20.635065
IPR038450	Photosystem II Pbs27 superfamily	GENE3D	1.20.58.810	Photosystem II Pbs27	coord: 98..206 e-value: 1.7E-29 score: 104.4
None	No IPR available	PANTHER	PTHR34041:SF3	PHOTOSYSTEM II D1 PRECURSOR PROCESSING PROTEIN PSB27-H2, CHLOROPLASTIC	coord: 28..206

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy7G009930	CsGy7G009930	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G009930.2.exon1	CsGy7G009930.2.exon1	exon
CsGy7G009930.2.exon2	CsGy7G009930.2.exon2	exon
CsGy7G009930.2.exon3	CsGy7G009930.2.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy7G009930.2	cds.CsGy7G009930.2	CDS
cds.CsGy7G009930.2	cds.CsGy7G009930.2_2	CDS
cds.CsGy7G009930.2	cds.CsGy7G009930.2_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy7G009930.2	CsGy7G009930.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010206	photosystem II repair
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009543	chloroplast thylakoid lumen