CsGy7G008795.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G008795.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr7: 10785486 .. 10785836 (-)
Sequence length	222
RNA-Seq Expression	CsGy7G008795.1
Synteny	CsGy7G008795.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACTGCAAAAGAATGCACTAAATCTCGGCGGAATTTGCACTCTCAATTTGGCTTCTTTTCTCACTATTCAAACCTTTCGTCTTACTGCTGAAGCCAAACGGGTAATTCATTTTCCTCTAGGACTACATATCCTTTCTAAACTAAATGTGTATGTTGGAATGAAAGAAGATTCGTAAATTCTAAACCAGTTCTTTAATACTATTCTATTGGGTTTTTTGATTCCTCTGCAGAGAAAGATTGGTTTGCCCTCTAAAGCTTGTAGAGGAAAAAGGATTCTATATATGAAAAATTATGCCGAGGAAATGCTGTCATTCAGTGGTCGCCATTGTCTGATCTTATTGCCATGA

mRNA sequence

ATGCCACTGCAAAAGAATGCACTAAATCTCGGCGGAATTTGCACTCTCAATTTGGCTTCTTTTCTCACTATTCAAACCTTTCGTCTTACTGCTGAAGCCAAACGGAGAAAGATTGGTTTGCCCTCTAAAGCTTGTAGAGGAAAAAGGATTCTATATATGAAAAATTATGCCGAGGAAATGCTGTCATTCAGTGGTCGCCATTGTCTGATCTTATTGCCATGA

Coding sequence (CDS)

ATGCCACTGCAAAAGAATGCACTAAATCTCGGCGGAATTTGCACTCTCAATTTGGCTTCTTTTCTCACTATTCAAACCTTTCGTCTTACTGCTGAAGCCAAACGGAGAAAGATTGGTTTGCCCTCTAAAGCTTGTAGAGGAAAAAGGATTCTATATATGAAAAATTATGCCGAGGAAATGCTGTCATTCAGTGGTCGCCATTGTCTGATCTTATTGCCATGA

Protein sequence

MPLQKNALNLGGICTLNLASFLTIQTFRLTAEAKRRKIGLPSKACRGKRILYMKNYAEEMLSFSGRHCLILLP*

Homology

[Close]

BLAST of CsGy7G008795.1 vs. NCBI nr
Match: XP_004139324.1 (uncharacterized protein LOC101203873 [Cucumis sativus] >KGN60659.1 hypothetical protein Csa_019507 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 2.75e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 7  ALNLGGICTLNLASFLTIQTFRLTAEAKRRKIGLPSKACRGK 48
          A+ LGGICTLNLASFLTIQT R+TAEAKRRKIGLP KACRGK
Sbjct: 14 AVILGGICTLNLASFLTIQTLRVTAEAKRRKIGLPCKACRGK 55

[Close]

BLAST of CsGy7G008795.1 vs. NCBI nr
Match: XP_008457839.1 (PREDICTED: uncharacterized protein LOC103497424 [Cucumis melo])

HSP 1 Score: 73.6 bits (179), Expect = 7.85e-15
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 7  ALNLGGICTLNLASFLTIQTFRLTAEAKRRKIGLPSKACRGK 48
          A+ LGGICTLNLASFLTIQT RLTAEAKRRKI LP KACRGK
Sbjct: 14 AVILGGICTLNLASFLTIQTLRLTAEAKRRKIALPCKACRGK 55

[Close]

BLAST of CsGy7G008795.1 vs. NCBI nr
Match: KAA0061587.1 (uncharacterized protein E6C27_scaffold41G001520 [Cucumis melo var. makuwa] >TYJ97796.1 uncharacterized protein E5676_scaffold285G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 9.38e-15
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 7  ALNLGGICTLNLASFLTIQTFRLTAEAKRRKIGLPSKACRGK 48
          A+ LGGICTLNLASFLTIQT RLTAEAKRRKI LP KACRGK
Sbjct: 14 AVILGGICTLNLASFLTIQTLRLTAEAKRRKIALPCKACRGK 55

[Close]

BLAST of CsGy7G008795.1 vs. NCBI nr
Match: XP_022142951.1 (uncharacterized protein LOC111012944 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 3.17e-14
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 7  ALNLGGICTLNLASFLTIQTFRLTAEAKRRKIGLPSKACRGK 48
          A+ LGGICTLN ASFLTIQT RLTAEAKRRKI LP KACRGK
Sbjct: 14 AVILGGICTLNFASFLTIQTLRLTAEAKRRKIALPCKACRGK 55

[Close]

BLAST of CsGy7G008795.1 vs. NCBI nr
Match: XP_038889623.1 (uncharacterized protein LOC120079492 [Benincasa hispida])

HSP 1 Score: 72.0 bits (175), Expect = 3.17e-14
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 7  ALNLGGICTLNLASFLTIQTFRLTAEAKRRKIGLPSKACRGK 48
          A+ LGGICTLN ASFLTIQT RLTAEAKRRKI LP KACRGK
Sbjct: 14 AVILGGICTLNFASFLTIQTLRLTAEAKRRKIALPCKACRGK 55

[Close]

BLAST of CsGy7G008795.1 vs. ExPASy TrEMBL
Match: A0A0A0LI05 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006050 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.33e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 7  ALNLGGICTLNLASFLTIQTFRLTAEAKRRKIGLPSKACRGK 48
          A+ LGGICTLNLASFLTIQT R+TAEAKRRKIGLP KACRGK
Sbjct: 14 AVILGGICTLNLASFLTIQTLRVTAEAKRRKIGLPCKACRGK 55

[Close]

BLAST of CsGy7G008795.1 vs. ExPASy TrEMBL
Match: A0A1S3C6K9 (uncharacterized protein LOC103497424 OS=Cucumis melo OX=3656 GN=LOC103497424 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.80e-15
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 7  ALNLGGICTLNLASFLTIQTFRLTAEAKRRKIGLPSKACRGK 48
          A+ LGGICTLNLASFLTIQT RLTAEAKRRKI LP KACRGK
Sbjct: 14 AVILGGICTLNLASFLTIQTLRLTAEAKRRKIALPCKACRGK 55

[Close]

BLAST of CsGy7G008795.1 vs. ExPASy TrEMBL
Match: A0A5D3BFD4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00060 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.54e-15
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 7  ALNLGGICTLNLASFLTIQTFRLTAEAKRRKIGLPSKACRGK 48
          A+ LGGICTLNLASFLTIQT RLTAEAKRRKI LP KACRGK
Sbjct: 14 AVILGGICTLNLASFLTIQTLRLTAEAKRRKIALPCKACRGK 55

[Close]

BLAST of CsGy7G008795.1 vs. ExPASy TrEMBL
Match: A0A6J1CNQ8 (uncharacterized protein LOC111012944 OS=Momordica charantia OX=3673 GN=LOC111012944 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.54e-14
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = 0


Query: 7  ALNLGGICTLNLASFLTIQTFRLTAEAKRRKIGLPSKACRGK 48
          A+ LGGICTLN ASFLTIQT RLTAEAKRRKI LP KACRGK
Sbjct: 14 AVILGGICTLNFASFLTIQTLRLTAEAKRRKIALPCKACRGK 55

[Close]

BLAST of CsGy7G008795.1 vs. ExPASy TrEMBL
Match: A0A4Y1RVW7 (Uncharacterized protein (Fragment) OS=Prunus dulcis OX=3755 GN=Prudu_020663 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.34e-08
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 0


Query: 7  ALNLGGICTLNLASFLTIQTFRLTAEAKRRKIGLPSKACRGKRILYMKNYAEEMLSFSGR 66
          A+ +GG  TLNLAS  TI   RL  E+KRRKI LP   CRGK   Y+    + ++  +GR
Sbjct: 14 AVLVGGFFTLNLASTATIGALRLATESKRRKIALPCGVCRGKGF-YICKLCKGIIPLNGR 73

Query: 67 HCLILLP 73
           C+  LP
Sbjct: 74 LCMTQLP 79

The following BLAST results are available for this feature:

BLAST of CsGy7G008795.1 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy7G008795.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139324.1	2.75e-15	88.10	uncharacterized protein LOC101203873 [Cucumis sativus] >KGN60659.1 hypothetical ...	[more]
XP_008457839.1	7.85e-15	88.10	PREDICTED: uncharacterized protein LOC103497424 [Cucumis melo]	[more]
KAA0061587.1	9.38e-15	88.10	uncharacterized protein E6C27_scaffold41G001520 [Cucumis melo var. makuwa] >TYJ9...	[more]
XP_022142951.1	3.17e-14	85.71	uncharacterized protein LOC111012944 [Momordica charantia]	[more]
XP_038889623.1	3.17e-14	85.71	uncharacterized protein LOC120079492 [Benincasa hispida]	[more]

BLAST of CsGy7G008795.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI05	1.33e-15	88.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006050 PE=4 SV=1	[more]
A0A1S3C6K9	3.80e-15	88.10	uncharacterized protein LOC103497424 OS=Cucumis melo OX=3656 GN=LOC103497424 PE=...	[more]
A0A5D3BFD4	4.54e-15	88.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1CNQ8	1.54e-14	85.71	uncharacterized protein LOC111012944 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A4Y1RVW7	1.34e-08	46.27	Uncharacterized protein (Fragment) OS=Prunus dulcis OX=3755 GN=Prudu_020663 PE=4...	[more]

BLAST of CsGy7G008795.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy7G008795	CsGy7G008795	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G008795.1.exon2	CsGy7G008795.1.exon2	exon
CsGy7G008795.1.exon1	CsGy7G008795.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy7G008795.1	cds.CsGy7G008795.1_2	CDS
cds.CsGy7G008795.1	cds.CsGy7G008795.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy7G008795.1	CsGy7G008795.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane