CsGy7G002655.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G002655.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Protochlorophyllide reductase
Location	Gy14Chr7: 2131378 .. 2132173 (-)
Sequence length	796
RNA-Seq Expression	CsGy7G002655.1
Synteny	CsGy7G002655.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATCAAAGGTCCTTAAAAAGGTGACCATAAACCTTCATGATAAACACACACCAACTTCACAATCTTCAAAAATCTCTCCTTATTAAACTTTCTTCTCCAAAAATCCTCTTCTTTTTTGTATTACAAATTCTCAAGAAGAAAAATAATTAAACCGATGTGGCGGTTGGCGGCGGCAGTTAGAAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACGGCGGCGGAGTTGACGGTGGCGGAAGGGTGGGGGCGGTGGTGGACGGTGACCGAAGAGAAGGTAATTCATATGGGTTTTCTATGATTTACAGCCTTCTTCGAACCCCATTTTCGATTCTGTCTTGCTTTTCTCAACCACACGTTAATGGGGTCGACGGGATGTGGGTCTCCGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGAGATATGCAATATTAATGTAAATAAAATAAATAAATGGGGTTTCTTCCTCCTCTGTAGTAATTTCGATTGGATCTGGTTTTCAAAAAGAGTCACAAATCGAATGCTATAGAATTATTAATTGGTATCATATACTTTGATCGGTTTTACTTTTTCTTTTTTCTTTTTTGTTTCCTTTTTGTGTTAGAATATTGTATAACAAATTGTGGGTGTGTAACGTTACAGTCAGTTATGCTTGAATTGACGGTTTAAAATTGACTTGAATTTTGAAATTTAGTGATCTTATATGTACGTATATGTTCTTGTATACAATAATGTATTAGTTCAAAAGTTAC

mRNA sequence

AAAAATCAAAGGTCCTTAAAAAGGTGACCATAAACCTTCATGATAAACACACACCAACTTCACAATCTTCAAAAATCTCTCCTTATTAAACTTTCTTCTCCAAAAATCCTCTTCTTTTTTGTATTACAAATTCTCAAGAAGAAAAATAATTAAACCGATGTGGCGGTTGGCGGCGGCAGTTAGAAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACGGCGGCGGAGTTGACGGTGGCGGAAGGGTGGGGGCGGTGGTGGACGGTGACCGAAGAGAAGGTAATTCATATGGGTTTTCTATGATTTACAGCCTTCTTCGAACCCCATTTTCGATTCTGTCTTGCTTTTCTCAACCACACGTTAATGGGGTCGACGGGATGTGGGTCTCCGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGAGATATGCAATATTAATGTAAATAAAATAAATAAATGGGGTTTCTTCCTCCTCTGTAGTAATTTCGATTGGATCTGGTTTTCAAAAAGAGTCACAAATCGAATGCTATAGAATTATTAATTGGTATCATATACTTTGATCGGTTTTACTTTTTCTTTTTTCTTTTTTGTTTCCTTTTTGTGTTAGAATATTGTATAACAAATTGTGGGTGTGTAACGTTACAGTCAGTTATGCTTGAATTGACGGTTTAAAATTGACTTGAATTTTGAAATTTAGTGATCTTATATGTACGTATATGTTCTTGTATACAATAATGTATTAGTTCAAAAGTTAC

Coding sequence (CDS)

ATGTGGCGGTTGGCGGCGGCAGTTAGAAGAAACCTCCACAACATAAGGAAGAGCCCACGAGTGGCAGATGAAAGCATGTACGGCGGCGGAGTTGACGGTGGCGGAAGGGTGGGGGCGGTGGTGGACGGTGACCGAAGAGAAGGTAATTCATATGGGTTTTCTATGATTTACAGCCTTCTTCGAACCCCATTTTCGATTCTGTCTTGCTTTTCTCAACCACACGTTAATGGGGTCGACGGGATGTGGGTCTCCGGCGAGTTTCCAAGAATCTCGGAAGTTAATCATCTTATGGTAAGCGACAGCATGAGATATGCAATATTAATGTAA

Protein sequence

MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVGAVVDGDRREGNSYGFSMIYSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM*

Homology

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BLAST of CsGy7G002655.1 vs. NCBI nr
Match: XP_031744820.1 (uncharacterized protein LOC101211016 [Cucumis sativus] >KAE8645720.1 hypothetical protein Csa_020583 [Cucumis sativus])

HSP 1 Score: 223 bits (567), Expect = 2.68e-73
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVGAVVDGDRREGNSYGFSMIYSLL 60
           MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVGAVVDGDRREGNSYGFSMIYSLL
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVGAVVDGDRREGNSYGFSMIYSLL 60

Query: 61  RTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           RTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  RTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108

[Close]

BLAST of CsGy7G002655.1 vs. NCBI nr
Match: KAA0059153.1 (uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK02535.1 uncharacterized protein E5676_scaffold201G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 216 bits (549), Expect = 1.54e-70
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVGAVV-DGDRREGNSYGFSMIYSL 60
           MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRV AVV DGDRREGNSYGFSMIYSL
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAAVVVDGDRREGNSYGFSMIYSL 60

Query: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109

[Close]

BLAST of CsGy7G002655.1 vs. NCBI nr
Match: XP_038888385.1 (uncharacterized protein LOC120078235 [Benincasa hispida])

HSP 1 Score: 214 bits (546), Expect = 4.88e-70
Identity = 107/112 (95.54%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGG----GVDGGGRVGAVVDGDRREGNSYGFSMI 60
           MWRLAAAVRRNLHNIRKSPRVADESMYGG    GVDGGGRV AVVDGDRREGNSYGFSMI
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGAGGGGVDGGGRVAAVVDGDRREGNSYGFSMI 60

Query: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  YSLLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 112

[Close]

BLAST of CsGy7G002655.1 vs. NCBI nr
Match: KAG6572248.1 (hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011878.1 hypothetical protein SDJN02_26785, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 200 bits (509), Expect = 1.83e-64
Identity = 99/110 (90.00%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMY--GGGVDGGGRVGAVVDGDRREGNSYGFSMIYS 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  GGG DGGGRV   +DG+RR+GNSYGFSMIY+
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGGRV---IDGNRRDGNSYGFSMIYT 60

Query: 61  LLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  LLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

[Close]

BLAST of CsGy7G002655.1 vs. NCBI nr
Match: XP_022969305.1 (uncharacterized protein LOC111468352 [Cucurbita maxima])

HSP 1 Score: 197 bits (500), Expect = 4.33e-63
Identity = 98/110 (89.09%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMY--GGGVDGGGRVGAVVDGDRREGNSYGFSMIYS 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  GGG DGG  V   +DG+RREGNSYGFSMIY+
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATV---IDGNRREGNSYGFSMIYT 60

Query: 61  LLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  LLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

[Close]

BLAST of CsGy7G002655.1 vs. ExPASy TrEMBL
Match: A0A5D3BTM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00140 PE=4 SV=1)

HSP 1 Score: 216 bits (549), Expect = 7.48e-71
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVGAVV-DGDRREGNSYGFSMIYSL 60
           MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRV AVV DGDRREGNSYGFSMIYSL
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAAVVVDGDRREGNSYGFSMIYSL 60

Query: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109

[Close]

BLAST of CsGy7G002655.1 vs. ExPASy TrEMBL
Match: A0A6J1HZK3 (uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352 PE=4 SV=1)

HSP 1 Score: 197 bits (500), Expect = 2.09e-63
Identity = 98/110 (89.09%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMY--GGGVDGGGRVGAVVDGDRREGNSYGFSMIYS 60
           MWRLAAAVRRNLHNIRKSPRVADESMY  GGG DGG  V   +DG+RREGNSYGFSMIY+
Sbjct: 1   MWRLAAAVRRNLHNIRKSPRVADESMYSAGGGADGGATV---IDGNRREGNSYGFSMIYT 60

Query: 61  LLRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           LLRTPFS+LSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM
Sbjct: 61  LLRTPFSLLSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 107

[Close]

BLAST of CsGy7G002655.1 vs. ExPASy TrEMBL
Match: A0A1S3C134 (uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=4 SV=1)

HSP 1 Score: 197 bits (501), Expect = 8.75e-63
Identity = 98/104 (94.23%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVGAVV-DGDRREGNSYGFSMIYSL 60
           MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRV AVV DGDRREGNSYGFSMIYSL
Sbjct: 41  MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVAAVVVDGDRREGNSYGFSMIYSL 100

Query: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMR 103
           LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLM S+  R
Sbjct: 101 LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMQSNLWR 144

[Close]

BLAST of CsGy7G002655.1 vs. ExPASy TrEMBL
Match: A0A6J1C6U0 (uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007908 PE=4 SV=1)

HSP 1 Score: 182 bits (463), Expect = 8.93e-58
Identity = 90/108 (83.33%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVGAVVDGDRREGNSYGFSMIYSLL 60
           MWRLAA +RRNLHNIRKSPRVADESMYGGG   GG  G V + DRR GNSYGFSMIYS+L
Sbjct: 1   MWRLAAELRRNLHNIRKSPRVADESMYGGGGGDGG--GIVAERDRRGGNSYGFSMIYSVL 60

Query: 61  RTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           RTPFS+L CFSQPHVNG DG+WVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  RTPFSVLCCFSQPHVNGADGLWVSGEFARISEVNHLMVSDSMRYAILM 106

[Close]

BLAST of CsGy7G002655.1 vs. ExPASy TrEMBL
Match: A0A6J1ER34 (uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC111437033 PE=4 SV=1)

HSP 1 Score: 177 bits (448), Expect = 1.79e-55
Identity = 91/109 (83.49%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMY-GGGVDGGGRVGAVVDGDRREGNSYGFSMIYSL 60
           MWRLAAAVR  LHNIRKSPRVADESM+ GGGVDGGGRV  V  G RRE NS+G S+IY++
Sbjct: 1   MWRLAAAVRSKLHNIRKSPRVADESMFSGGGVDGGGRV--VDGGRRRERNSHGVSIIYNV 60

Query: 61  LRTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 108
           LRTPFS LSCFS PHVNGVDGMWVSGEF RISEVNHLMVSDSMRYAILM
Sbjct: 61  LRTPFSFLSCFSHPHVNGVDGMWVSGEFARISEVNHLMVSDSMRYAILM 107

[Close]

BLAST of CsGy7G002655.1 vs. TAIR 10
Match: AT5G35732.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 110.5 bits (275), Expect = 8.4e-25
Identity = 59/108 (54.63%), Postives = 78/108 (72.22%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVGAVVDGDRREGNSYGFSMIYSLL 60
           M ++ + +RRNL N+RKSPRVAD++       G G  G V +G RR+    GF+ +  ++
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAG-PGVVANG-RRD----GFNSV--IM 60

Query: 61  RTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109
           R PFSI+SCF+ P V+G DG+WVSG++  ISEVNHLMVSDSMRYAILM
Sbjct: 61  RFPFSIISCFAVPRVSGTDGLWVSGDYGSISEVNHLMVSDSMRYAILM 100

[Close]

BLAST of CsGy7G002655.1 vs. TAIR 10
Match: AT2G04795.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35732.1); Has 18 Blast hits to 18 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-21
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 1   MWRLAAAVRRNLHNIRKSPRVADESMYGGGVDGGGRVGAVVDGDRREGNSYGFSMIYSLL 60
           M ++ + +RRNL N+RKSPRVADES               V+GD   GN         ++
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADES---------ALPSTTVNGDHGGGNGSN----GGIM 60

Query: 61  RTPFSILSCFSQPHVNGVDGMWVSGEFPRISEVNHLMVSDSMRYAILM 109
           + P SI+SCFS P V+  DG+WVSG++ R+SEVNHLMV D MRYA+LM
Sbjct: 61  KFPLSIMSCFSVPRVSRADGVWVSGDYGRVSEVNHLMVCDGMRYALLM 95

The following BLAST results are available for this feature:

BLAST of CsGy7G002655.1 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy7G002655.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744820.1	2.68e-73	100.00	uncharacterized protein LOC101211016 [Cucumis sativus] >KAE8645720.1 hypothetica...	[more]
KAA0059153.1	1.54e-70	98.17	uncharacterized protein E6C27_scaffold430G00710 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_038888385.1	4.88e-70	95.54	uncharacterized protein LOC120078235 [Benincasa hispida]	[more]
KAG6572248.1	1.83e-64	90.00	hypothetical protein SDJN03_28976, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022969305.1	4.33e-63	89.09	uncharacterized protein LOC111468352 [Cucurbita maxima]	[more]

BLAST of CsGy7G002655.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BTM8	7.48e-71	98.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1HZK3	2.09e-63	89.09	uncharacterized protein LOC111468352 OS=Cucurbita maxima OX=3661 GN=LOC111468352...	[more]
A0A1S3C134	8.75e-63	94.23	uncharacterized protein LOC103495667 OS=Cucumis melo OX=3656 GN=LOC103495667 PE=...	[more]
A0A6J1C6U0	8.93e-58	83.33	uncharacterized protein LOC111007908 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1ER34	1.79e-55	83.49	uncharacterized protein LOC111437033 OS=Cucurbita moschata OX=3662 GN=LOC1114370...	[more]

BLAST of CsGy7G002655.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35732.1	8.4e-25	54.63	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G04795.1	1.1e-21	48.15	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 105..108
None	No IPR available	PANTHER	PTHR48165	BNAC03G44900D PROTEIN	coord: 1..108

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy7G002655	CsGy7G002655	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G002655.1.exon1	CsGy7G002655.1.exon1	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G002655.1.utr3p1	CsGy7G002655.1.utr3p1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy7G002655.1	cds.CsGy7G002655.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G002655.1.utr5p1	CsGy7G002655.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy7G002655.1	CsGy7G002655.1-protein	polypeptide