CsGy7G001415.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy7G001415.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	Gy14Chr7: 1343565 .. 1343788 (+)
Sequence length	224
RNA-Seq Expression	CsGy7G001415.1
Synteny	CsGy7G001415.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGGAGCACCAATTGATGCTACGGAGTACAGAAGCATCGTTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAG

mRNA sequence

ATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGGAGCACCAATTGATGCTACGGAGTACAGAAGCATCGTTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAG

Coding sequence (CDS)

ATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGGAGCACCAATTGATGCTACGGAGTACAGAAGCATCGTTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGTTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAG

Protein sequence

MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYMERPTTMHYKVVKQILX

Homology

[Close]

BLAST of CsGy7G001415.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.7e-10
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 6    ATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYMERPTTM 65
            AT     PK  LH  T+  P D TEYR IVG L+YL  TRPDLSY V   S+YM  PT  
Sbjct: 1205 ATPMATSPKLTLHSGTK-LP-DPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDD 1264

Query: 66   HYKVVKQIL 75
            H+  +K++L
Sbjct: 1265 HWNALKRVL 1271

[Close]

BLAST of CsGy7G001415.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-08
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 10   PMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYMERPTTMHYKV 69
            PM P  +L   +     D TEYR IVG L+YL  TRPD+SY V   S++M  PT  H + 
Sbjct: 1224 PMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQA 1283

Query: 70   VKQIL 75
            +K+IL
Sbjct: 1284 LKRIL 1288

[Close]

BLAST of CsGy7G001415.1 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.1e-07
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYME 60
           M DC     P+  K      T   P D +++RSIVG L+YL  TRPD+SY V +  + M 
Sbjct: 71  MLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMH 130

Query: 61  RPTTMHYKVVKQIL 75
            PT   + ++K++L
Sbjct: 131 EPTLADFDLLKRVL 143

[Close]

BLAST of CsGy7G001415.1 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-04
Identity = 25/69 (36.23%), Postives = 39/69 (56.52%), Query Frame = 0


Query: 7   TKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNT-RPDLSYVVGMASRYMERPTTM 66
           T+ P+     L + T     D T Y+SIVG L +  NT RPD+SY V + SR++  P  +
Sbjct: 159 TQTPLCNSKPLFETTSPHLKDITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAI 218

Query: 67  HYKVVKQIL 75
           H +  +++L
Sbjct: 219 HLESARRVL 227

[Close]

BLAST of CsGy7G001415.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 9.3e-04
Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 31   YRSIVGCLRY-LLNTRPDLSYVVGMASRYMERPTTMHYKVVKQIL 75
            Y S VG L Y ++ TRPD+++ VG+ SR++E P   H++ VK IL
Sbjct: 1111 YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWIL 1155

[Close]

BLAST of CsGy7G001415.1 vs. NCBI nr
Match: KAE8652919.1 (hypothetical protein Csa_004527, partial [Cucumis sativus])

HSP 1 Score: 155 bits (391), Expect = 1.65e-47
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYME 60
          MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSY VGMASRYME
Sbjct: 1  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60

Query: 61 RPTTMHYKVVKQIL 74
          RPTTMHYKVVKQIL
Sbjct: 61 RPTTMHYKVVKQIL 74

[Close]

BLAST of CsGy7G001415.1 vs. NCBI nr
Match: KAE8646020.1 (hypothetical protein Csa_015698 [Cucumis sativus])

HSP 1 Score: 155 bits (391), Expect = 2.08e-47
Identity = 73/74 (98.65%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYME 60
          MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSY VGMASRYME
Sbjct: 1  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60

Query: 61 RPTTMHYKVVKQIL 74
          RPTTMHYKVVKQIL
Sbjct: 61 RPTTMHYKVVKQIL 74

[Close]

BLAST of CsGy7G001415.1 vs. NCBI nr
Match: KAE8648201.1 (hypothetical protein Csa_018467, partial [Cucumis sativus])

HSP 1 Score: 156 bits (395), Expect = 4.86e-47
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYME 60
          MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYME
Sbjct: 3  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYME 62

Query: 61 RPTTMHYKVVKQIL 74
          RPTTMHYKVVKQIL
Sbjct: 63 RPTTMHYKVVKQIL 76

[Close]

BLAST of CsGy7G001415.1 vs. NCBI nr
Match: KAE8653115.1 (hypothetical protein Csa_019554, partial [Cucumis sativus])

HSP 1 Score: 152 bits (383), Expect = 2.74e-46
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYME 60
          MADCNATKYPMEPKAQLHKD EGAPIDATEYRSIVGCLRYLL TRPDLSYVVGMASRYME
Sbjct: 1  MADCNATKYPMEPKAQLHKDMEGAPIDATEYRSIVGCLRYLLKTRPDLSYVVGMASRYME 60

Query: 61 RPTTMHYKVVKQIL 74
          RPTTMHYKVVKQIL
Sbjct: 61 RPTTMHYKVVKQIL 74

[Close]

BLAST of CsGy7G001415.1 vs. NCBI nr
Match: KAE8648103.1 (hypothetical protein Csa_004691, partial [Cucumis sativus])

HSP 1 Score: 151 bits (381), Expect = 5.54e-46
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYME 60
          M DCNATKYPMEPKAQLHKD EGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRY+E
Sbjct: 1  MVDCNATKYPMEPKAQLHKDMEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYIE 60

Query: 61 RPTTMHYKVVKQIL 74
          RPTTMHYKVVKQIL
Sbjct: 61 RPTTMHYKVVKQIL 74

[Close]

BLAST of CsGy7G001415.1 vs. ExPASy TrEMBL
Match: A0A0A9FJ50 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 120 bits (301), Expect = 3.39e-31
Identity = 54/74 (72.97%), Postives = 65/74 (87.84%), Query Frame = 0


Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYME 60
           M D N TKYPME KAQ+HKD++G P+DATEYR +VGCLRYLL+TRPDLS+ VG+ASR+ME
Sbjct: 81  MEDYNPTKYPMEHKAQVHKDSDGQPVDATEYRRVVGCLRYLLHTRPDLSHAVGVASRHME 140

Query: 61  RPTTMHYKVVKQIL 74
           RPT MH K+VKQ+L
Sbjct: 141 RPTVMHQKLVKQML 154

[Close]

BLAST of CsGy7G001415.1 vs. ExPASy TrEMBL
Match: A0A5K0VEQ6 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS1129 PE=4 SV=1)

HSP 1 Score: 120 bits (301), Expect = 1.58e-30
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYME 60
           M DCN TK PMEP++QL+KD EG P+DATEYR  +GCLRYL++TRPDL Y VG+ASR+ME
Sbjct: 202 MFDCNPTKIPMEPRSQLNKDPEGQPVDATEYRRFIGCLRYLVHTRPDLLYAVGVASRFME 261

Query: 61  RPTTMHYKVVKQIL 74
           RPT MH+K VKQIL
Sbjct: 262 RPTVMHHKAVKQIL 275

[Close]

BLAST of CsGy7G001415.1 vs. ExPASy TrEMBL
Match: A0A6G1EJC3 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_014570 PE=4 SV=1)

HSP 1 Score: 116 bits (291), Expect = 7.56e-30
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYME 60
           M++CN TK+PME + QLHKD EG P DA EYR I+GCLRYLL+TRPD+S+ VG+ASR++E
Sbjct: 65  MSECNPTKFPMELRTQLHKDGEGHPADAMEYRRIIGCLRYLLHTRPDMSFAVGVASRFIE 124

Query: 61  RPTTMHYKVVKQIL 74
           RPT MH+K VKQIL
Sbjct: 125 RPTVMHHKAVKQIL 138

[Close]

BLAST of CsGy7G001415.1 vs. ExPASy TrEMBL
Match: Q0J8A6 (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=2 SV=1)

HSP 1 Score: 119 bits (297), Expect = 2.53e-29
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1    MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYME 60
            M  CN T  PMEP++ LHKD +G PIDATEYR ++GCLRYLL+TRPDLSY VG+ASR+ME
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   RPTTMHYKVVKQIL 74
            RPTTMH K VK IL
Sbjct: 1233 RPTTMHLKAVKMIL 1246

[Close]

BLAST of CsGy7G001415.1 vs. ExPASy TrEMBL
Match: B8BDZ6 (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 119 bits (297), Expect = 2.53e-29
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 1    MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYME 60
            M  CN T  PMEP++ LHKD +G PIDATEYR ++GCLRYLL+TRPDLSY VG+ASR+ME
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   RPTTMHYKVVKQIL 74
            RPTTMH K VK IL
Sbjct: 1233 RPTTMHLKAVKMIL 1246

[Close]

BLAST of CsGy7G001415.1 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 2.2e-08
Identity = 28/74 (37.84%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYME 60
           M DC     P+  K      T   P D +++RSIVG L+YL  TRPD+SY V +  + M 
Sbjct: 71  MLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMH 130

Query: 61  RPTTMHYKVVKQIL 75
            PT   + ++K++L
Sbjct: 131 EPTLADFDLLKRVL 143

[Close]

BLAST of CsGy7G001415.1 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 52.4 bits (124), Expect = 1.9e-07
Identity = 25/71 (35.21%), Postives = 37/71 (52.11%), Query Frame = 0


Query: 4   CNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYMERPT 63
           C  +  PM+P       + G  +DA  YR ++G L YL  TR D+S+ V   S++ E P 
Sbjct: 351 CKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPR 410

Query: 64  TMHYKVVKQIL 75
             H + V +IL
Sbjct: 411 LAHQQAVMKIL 421

The following BLAST results are available for this feature:

BLAST of CsGy7G001415.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	6.7e-10	50.72	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.6e-08	46.15	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92519	3.1e-07	37.84	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P25600	1.1e-04	36.23	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]
P10978	9.3e-04	46.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CsGy7G001415.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652919.1	1.65e-47	98.65	hypothetical protein Csa_004527, partial [Cucumis sativus]	[more]
KAE8646020.1	2.08e-47	98.65	hypothetical protein Csa_015698 [Cucumis sativus]	[more]
KAE8648201.1	4.86e-47	100.00	hypothetical protein Csa_018467, partial [Cucumis sativus]	[more]
KAE8653115.1	2.74e-46	97.30	hypothetical protein Csa_019554, partial [Cucumis sativus]	[more]
KAE8648103.1	5.54e-46	95.95	hypothetical protein Csa_004691, partial [Cucumis sativus]	[more]

BLAST of CsGy7G001415.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A9FJ50	3.39e-31	72.97	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Arundo donax O...	[more]
A0A5K0VEQ6	1.58e-30	71.62	Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Nym...	[more]
A0A6G1EJC3	7.56e-30	68.92	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Oryza meyerian...	[more]
Q0J8A6	2.53e-29	71.62	Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE...	[more]
B8BDZ6	2.53e-29	71.62	Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4...	[more]

BLAST of CsGy7G001415.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	2.2e-08	37.84	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	1.9e-07	35.21	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy7G001415	CsGy7G001415	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy7G001415.1.exon1	CsGy7G001415.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy7G001415.1	cds.CsGy7G001415.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy7G001415.1	CsGy7G001415.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048015	phosphatidylinositol-mediated signaling
biological_process	GO:0046854	phosphatidylinositol phosphate biosynthetic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0004430	1-phosphatidylinositol 4-kinase activity