CsGy5G028310.2 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy5G028310.2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1
Location	Gy14Chr5: 31979498 .. 31981757 (+)
Sequence length	876
RNA-Seq Expression	CsGy5G028310.2
Synteny	CsGy5G028310.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGAAGAAGAAAGGGAGGAAAAATGAAATCCCCGGTTTTGTGTAGAGCGGCGGCCAAGGTTTAGCATTTCATTGCCCTAAATCGCTCCCTTCTTCCCTTTCTTTCCATTTACCCATGGCTTCCTTTGCCGCCAGGTCCATTTTTCGATCCTCCTCCGCCAAGGCTGCCACTCTTCTCAGCGCCGGAGCCAGAGCTGCTCCGGCTTCTTCACCATTTCGCATTGCTTCCAAACGACCTTTCTCTCACTGCTCTTTTAGGTAATTCCCTCCCAACCCTTCGACTTCGACGATATTTTTTCAATGTAATTTGATTCTGGAAACTCAGCGTGTGAGTTCAGTTAAGATGCGTGGAAAAGTATGCTGAGTGTTCTCATAGGTATTGTTTTTCACTTTCTCTTTGAAGGCTTCCGATTGAACTGAGCTTCTGCGTCGAGTCCATGCTTCCCTTCCATTCTGCAACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTTTCTCCCCATAGCTTTGGTTGGCTTTCAGAAGGTATTTTCAGTCCTTATTCTTATAGAGTGAATTTTACTTTTTCCTATCTTCTTTTTATCCTGCCACTACGAATTCTGATTTCTTTTGTTCAACATTGGATAGATGCATTCTTGGTCCTACAATCGAATTAGTAGTTTCTACAGTGAATTTTACCTTCTTTTTTTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTATTCAATGTTCTTGTTCTGCTGACACTATGAAGTTTCTGATTTCTTTCGTTCAAGAATTTGGATAGCTCCATTCTTAATCTTACTACCGTGAGTTTTAACTTCTTCAATGTTCTTGTTAGCTGGCACTATGAAACTTTCTAATTTCTTTTGTTCATGATTGAATTTGAACTTTTTCAATGTTCTTGTTACTTACCGCGCTTCTATAATATAAATGCTCTTTTTGCTTGATTGAACAAGCATCTTATCCGTCCTTTTTTTTTTTTCGTTTTTTTCGTATCAATGGATTGCAATTTTGAGTTCATCTTCCTAAGATAAATATTAAATGCTGCATTCTGTACTAGGGTCTAACTTTTAAGCTAAAGAAGTAACGAAACCCTCCCCTCCAACTCTAACTTGTAATTTAGTTCTTTATAAGTGATGCTTGTATGTTCAAATCACGACTATTTCATCCACATAATTGATATAAACGCGAGGATACTAATTGTGATGTTTAATCAGTGTTCAATGATGATGTGTGATGACGAATGGTCAAGGGGCAGGAAGTTTTATGTGCAGAGTTCTACATTGTGACAGTGGCACTGCTAAATTTTGTGAACTGATCTGCAGGAATTTGGATTCCCAAGTCTTGACTTTCATTCTAGTTTGCATGTCTTAGATTCTGAATTTGTGTCACTATGGATTACTAGTAGAGTGTATAGGAAGAGATCTACAATCGACAAACATATGAGTTTTATCTGAATAGAAAGGTTTCAAGAAACTGAATTCACAAAGTCTTATTATGTTGAATTCCTTATAGGATTGTCTTGCAATAAAATGAAGGATTCTTTCTCCAGTTGTATGGTTGCTCTATCATTACTTAAGCTATGAACATACTTCATAGTTCTGATGGATGCTTGTGTTTTACAACTCCGAAATCTGTTAGATTGCTGAATGTATGAACTCAACAAGATTTATTAAATACAAAGATGTTTGGTGAACTCTAATCTTATTTTCTGTCTATGAACAGATCTGTGTTACACATCGTTAACGCTATTTAGTATCTATTTGGCAGTGTCTGGCTTGCAAACTTCATGATATATGATGATGATTGGATAAGGTTTTGACCACCTGGGCAACAACATATTCTATTCAACCTGACTTGGCGATCTTATATATTGAATTCTGTTTCCTCAGCAAAGCATATGGTTGAGATTTCCCATAGAAACATGAGCAACAGTTTTGCTAGGATTGTCCTGTGTTTTAGTGACTTCAAAAATTGTTCTCTCGTGGTTAATTTATGGTTTTAATGATGTTAAAAAAGAAAAGGAAAAGAGTTGAAGTGGAATGTGAATGAAAAAGAAGATATTAAGGTCGTGTTTATTCCTGGTGAAACATAATCAATCAAAAGTATTCTAAAAGATGCGTCTTATTTCGTTAGATTTGTTTTGTTACTTATGTTTTGTAATGGTAATGAATTGAAGGAACATAGCTTGCAAATTTGTTATAAAAATGTGTGCAATCTGATTGAAGAAGATAGGGGTGTTTGAAAATGAT

mRNA sequence

AAGGAAGAAGAAAGGGAGGAAAAATGAAATCCCCGGTTTTGTGTAGAGCGGCGGCCAAGGTTTAGCATTTCATTGCCCTAAATCGCTCCCTTCTTCCCTTTCTTTCCATTTACCCATGGCTTCCTTTGCCGCCAGGTCCATTTTTCGATCCTCCTCCGCCAAGGCTGCCACTCTTCTCAGCGCCGGAGCCAGAGCTGCTCCGGCTTCTTCACCATTTCGCATTGCTTCCAAACGACCTTTCTCTCACTGCTCTTTTAGGCTTCCGATTGAACTGAGCTTCTGCGTCGAGTCCATGCTTCCCTTCCATTCTGCAACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTTTCTCCCCATAGCTTTGGTTGGCTTTCAGAAGTATCTATTTGGCAGTGTCTGGCTTGCAAACTTCATGATATATGATGATGATTGGATAAGGTTTTGACCACCTGGGCAACAACATATTCTATTCAACCTGACTTGGCGATCTTATATATTGAATTCTGTTTCCTCAGCAAAGCATATGGTTGAGATTTCCCATAGAAACATGAGCAACAGTTTTGCTAGGATTGTCCTGTGTTTTAGTGACTTCAAAAATTGTTCTCTCGTGGTTAATTTATGGTTTTAATGATGTTAAAAAAGAAAAGGAAAAGAGTTGAAGTGGAATGTGAATGAAAAAGAAGATATTAAGGTCGTGTTTATTCCTGGTGAAACATAATCAATCAAAAGTATTCTAAAAGATGCGTCTTATTTCGTTAGATTTGTTTTGTTACTTATGTTTTGTAATGGTAATGAATTGAAGGAACATAGCTTGCAAATTTGTTATAAAAATGTGTGCAATCTGATTGAAGAAGATAGGGGTGTTTGAAAATGAT

Coding sequence (CDS)

ATGGCTTCCTTTGCCGCCAGGTCCATTTTTCGATCCTCCTCCGCCAAGGCTGCCACTCTTCTCAGCGCCGGAGCCAGAGCTGCTCCGGCTTCTTCACCATTTCGCATTGCTTCCAAACGACCTTTCTCTCACTGCTCTTTTAGGCTTCCGATTGAACTGAGCTTCTGCGTCGAGTCCATGCTTCCCTTCCATTCTGCAACTTCTTCGGCATTAATGACTTCGATGCTTTCTGTTTCTCCCCATAGCTTTGGTTGGCTTTCAGAAGTATCTATTTGGCAGTGTCTGGCTTGCAAACTTCATGATATATGA

Protein sequence

MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESMLPFHSATSSALMTSMLSVSPHSFGWLSEVSIWQCLACKLHDI*

Homology

[Close]

BLAST of CsGy5G028310.2 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-11
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 6  ARSIFRSSSAKAATLLSAGARAAPASSP--FRIASKRPFSHCSFRLPIELSFCVESMLPF 65
          ARS+ R++S+++A   +    +   S+P  FR  ++R       R P+ELSFCVES+LP+
Sbjct: 10 ARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLPY 69

Query: 66 HSATSSALMTSMLSVSPHSFGWLSE 89
          HSAT+SALMTS LS+S  ++GWLS+
Sbjct: 70 HSATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of CsGy5G028310.2 vs. NCBI nr
Match: XP_004148697.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 169 bits (428), Expect = 2.23e-52
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM 60
          MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM
Sbjct: 1  MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSPHSFGWLSEVS 90
          LPFHSATSSALMTSMLSVSPHSFGWLSEVS
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSFGWLSEVS 90

[Close]

BLAST of CsGy5G028310.2 vs. NCBI nr
Match: XP_004148698.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucumis sativus] >KGN52462.1 hypothetical protein Csa_008896 [Cucumis sativus])

HSP 1 Score: 167 bits (424), Expect = 8.81e-52
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM 60
          MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM
Sbjct: 1  MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSPHSFGWLSEV 89
          LPFHSATSSALMTSMLSVSPHSFGWLSEV
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSFGWLSEV 89

[Close]

BLAST of CsGy5G028310.2 vs. NCBI nr
Match: XP_008459321.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 156 bits (395), Expect = 2.40e-47
Identity = 82/90 (91.11%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM 60
          MASFAAR+IFRSSS K ATLLSAGARAAPA SPFRIASKRPFSH SFR+PIE+SFCVESM
Sbjct: 1  MASFAARAIFRSSSGKTATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSPHSFGWLSEVS 90
          LPFHSATSSALMTSMLSVSPHS+GWLSEVS
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSEVS 90

[Close]

BLAST of CsGy5G028310.2 vs. NCBI nr
Match: KAA0039497.1 (protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (392), Expect = 7.33e-47
Identity = 81/90 (90.00%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM 60
          MASFAAR+IFRSSS KAATLLSAGARAAPA SPFRIASKRPFSH SFR+PIE+SFCVESM
Sbjct: 1  MASFAARAIFRSSSGKAATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSPHSFGWLSEVS 90
          LPFHSATSSALMTSMLSVSPHS+GWLSE +
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSEAA 90

[Close]

BLAST of CsGy5G028310.2 vs. NCBI nr
Match: XP_008459322.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucumis melo])

HSP 1 Score: 155 bits (391), Expect = 9.50e-47
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM 60
          MASFAAR+IFRSSS K ATLLSAGARAAPA SPFRIASKRPFSH SFR+PIE+SFCVESM
Sbjct: 1  MASFAARAIFRSSSGKTATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSPHSFGWLSEV 89
          LPFHSATSSALMTSMLSVSPHS+GWLSEV
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSEV 89

[Close]

BLAST of CsGy5G028310.2 vs. ExPASy TrEMBL
Match: A0A0A0KVK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636540 PE=4 SV=1)

HSP 1 Score: 167 bits (424), Expect = 4.27e-52
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM 60
          MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM
Sbjct: 1  MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSPHSFGWLSEV 89
          LPFHSATSSALMTSMLSVSPHSFGWLSEV
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSFGWLSEV 89

[Close]

BLAST of CsGy5G028310.2 vs. ExPASy TrEMBL
Match: A0A1S3CB40 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1)

HSP 1 Score: 156 bits (395), Expect = 1.16e-47
Identity = 82/90 (91.11%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM 60
          MASFAAR+IFRSSS K ATLLSAGARAAPA SPFRIASKRPFSH SFR+PIE+SFCVESM
Sbjct: 1  MASFAARAIFRSSSGKTATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSPHSFGWLSEVS 90
          LPFHSATSSALMTSMLSVSPHS+GWLSEVS
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSEVS 90

[Close]

BLAST of CsGy5G028310.2 vs. ExPASy TrEMBL
Match: A0A5A7TDD1 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold64G003170 PE=4 SV=1)

HSP 1 Score: 155 bits (392), Expect = 3.55e-47
Identity = 81/90 (90.00%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 1  MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM 60
          MASFAAR+IFRSSS KAATLLSAGARAAPA SPFRIASKRPFSH SFR+PIE+SFCVESM
Sbjct: 1  MASFAARAIFRSSSGKAATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSPHSFGWLSEVS 90
          LPFHSATSSALMTSMLSVSPHS+GWLSE +
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSEAA 90

[Close]

BLAST of CsGy5G028310.2 vs. ExPASy TrEMBL
Match: A0A1S3C9E2 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498488 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 4.60e-47
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM 60
          MASFAAR+IFRSSS K ATLLSAGARAAPA SPFRIASKRPFSH SFR+PIE+SFCVESM
Sbjct: 1  MASFAARAIFRSSSGKTATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSPHSFGWLSEV 89
          LPFHSATSSALMTSMLSVSPHS+GWLSEV
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSEV 89

[Close]

BLAST of CsGy5G028310.2 vs. ExPASy TrEMBL
Match: A0A5D3CTR8 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00250 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 6.44e-47
Identity = 81/88 (92.05%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MASFAARSIFRSSSAKAATLLSAGARAAPASSPFRIASKRPFSHCSFRLPIELSFCVESM 60
          MASFAAR+IFRSSS KAATLLSAGARAAPA SPFRIASKRPFSH SFR+PIE+SFCVESM
Sbjct: 1  MASFAARAIFRSSSGKAATLLSAGARAAPARSPFRIASKRPFSHSSFRIPIEMSFCVESM 60

Query: 61 LPFHSATSSALMTSMLSVSPHSFGWLSE 88
          LPFHSATSSALMTSMLSVSPHS+GWLSE
Sbjct: 61 LPFHSATSSALMTSMLSVSPHSYGWLSE 88

[Close]

BLAST of CsGy5G028310.2 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 )

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-12
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 6  ARSIFRSSSAKAATLLSAGARAAPASSP--FRIASKRPFSHCSFRLPIELSFCVESMLPF 65
          ARS+ R++S+++A   +    +   S+P  FR  ++R       R P+ELSFCVES+LP+
Sbjct: 10 ARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLPY 69

Query: 66 HSATSSALMTSMLSVSPHSFGWLSE 89
          HSAT+SALMTS LS+S  ++GWLS+
Sbjct: 70 HSATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of CsGy5G028310.2 vs. TAIR 10
Match: AT2G20585.2 (nuclear fusion defective 6 )

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-12
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 6  ARSIFRSSSAKAATLLSAGARAAPASSP--FRIASKRPFSHCSFRLPIELSFCVESMLPF 65
          ARS+ R++S+++A   +    +   S+P  FR  ++R       R P+ELSFCVES+LP+
Sbjct: 10 ARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLPY 69

Query: 66 HSATSSALMTSMLSVSPHSFGWLSE 89
          HSAT+SALMTS LS+S  ++GWLS+
Sbjct: 70 HSATASALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of CsGy5G028310.2 vs. TAIR 10
Match: AT2G33847.1 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.4); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-12
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 5  AARSIFRSSSAKAATLLSAGARAAPAS--SPFRIASKRPFSHCSFRLPIELSFCVESMLP 64
          AARS+FRS   +AA       +  P+S  S F++  + P SH  FR P+ELS CVE+MLP
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLP 62

Query: 65 FHSATSSALMTSMLSVSPHS 83
          +H+AT+SAL+ SMLSVS  S
Sbjct: 63 YHTATASALLNSMLSVSGRS 82

[Close]

BLAST of CsGy5G028310.2 vs. TAIR 10
Match: AT2G33847.2 (unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28395.3); Has 71 Blast hits to 71 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 71; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-12
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 5  AARSIFRSSSAKAATLLSAGARAAPAS--SPFRIASKRPFSHCSFRLPIELSFCVESMLP 64
          AARS+FRS   +AA       +  P+S  S F++  + P SH  FR P+ELS CVE+MLP
Sbjct: 3  AARSVFRSGVGRAAVAALRSTKPMPSSARSSFKLPKQSPLSHRIFRSPVELSCCVETMLP 62

Query: 65 FHSATSSALMTSMLSVSPHS 83
          +H+AT+SAL+ SMLSVS  S
Sbjct: 63 YHTATASALLNSMLSVSGRS 82

[Close]

BLAST of CsGy5G028310.2 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 )

HSP 1 Score: 68.6 bits (166), Expect = 3.4e-12
Identity = 40/85 (47.06%), Postives = 59/85 (69.41%), Query Frame = 0


Query: 6  ARSIFRSSSAKAATLLSAGARAAPASSP--FRIASKRPFSHCSFRLPIELSFCVESMLPF 65
          ARS+ R++S+++A   +    +   S+P  FR  ++R       R P+ELSFCVES+LP+
Sbjct: 10 ARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLPY 69

Query: 66 HSATSSALMTSMLSVSPHSFGWLSE 89
          HSAT+SALMTS LS+S  ++GWLS+
Sbjct: 70 HSATASALMTSKLSISGQTYGWLSD 94

The following BLAST results are available for this feature:

BLAST of CsGy5G028310.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZJ3	4.9e-11	47.06	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of CsGy5G028310.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148697.1	2.23e-52	100.00	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X1 [Cucu...	[more]
XP_004148698.1	8.81e-52	100.00	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucu...	[more]
XP_008459321.1	2.40e-47	91.11	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
KAA0039497.1	7.33e-47	90.00	protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa]	[more]
XP_008459322.1	9.50e-47	91.01	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]

BLAST of CsGy5G028310.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVK4	4.27e-52	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636540 PE=4 SV=1	[more]
A0A1S3CB40	1.16e-47	91.11	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
A0A5A7TDD1	3.55e-47	90.00	Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A1S3C9E2	4.60e-47	91.01	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
A0A5D3CTR8	6.44e-47	92.05	Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of CsGy5G028310.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20585.1	3.4e-12	47.06	nuclear fusion defective 6	[more]
AT2G20585.2	3.4e-12	47.06	nuclear fusion defective 6	[more]
AT2G33847.1	3.4e-12	51.25	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc...	[more]
AT2G33847.2	3.4e-12	51.25	unknown protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein matc...	[more]
AT2G20585.3	3.4e-12	47.06	nuclear fusion defective 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 3..88
IPR033251	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial	PANTHER	PTHR33156:SF48	PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 3..88

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy5G028310	CsGy5G028310	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy5G028310.2.utr5p1	CsGy5G028310.2.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy5G028310.2.exon1	CsGy5G028310.2.exon1	exon
CsGy5G028310.2.exon2	CsGy5G028310.2.exon2	exon
CsGy5G028310.2.exon3	CsGy5G028310.2.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy5G028310.2	cds.CsGy5G028310.2	CDS
cds.CsGy5G028310.2	cds.CsGy5G028310.2_2	CDS
cds.CsGy5G028310.2	cds.CsGy5G028310.2_3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy5G028310.2.utr3p1	CsGy5G028310.2.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy5G028310.2	CsGy5G028310.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000741	karyogamy
cellular_component	GO:0016021	integral component of membrane