CsGy4G025745.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G025745.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr4: 30961866 .. 30962276 (-)
Sequence length	411
RNA-Seq Expression	CsGy4G025745.1
Synteny	CsGy4G025745.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGTCGTGGATTTGTATTTAACAGAACAGACTAATGGCTGTAGTCGGAACTTTTCATCATTTTGGTTGGCGGCTGTGTTCACTGTTGGCCGCTTGGTGGTGAATCTCGAACCCTTTATTACATTGGATTATATTTTCGTTTCACCAGTCGGTCACCGCGTGCCACTTTCATTCATTGTAAGCTCTTTCAGGGTAAAAAAATCTTTTATAAATAATTCTTTAAATGTGTCTGGACTTGGACCGGGACTTGGACCGGGACCTGGACCTGGACCTGGACCACACCATTTCTTAATTGATCCAGGTATGGTAAAATTTCCTCGTCAGTTCCACATTTTACATTCTCCACATGGAAAAACACTACCACTTTTGCATGTATATTTTCTAGTTCACGGTTGGTTCCAAAATTAG

mRNA sequence

ATGTGTGTCGTGGATTTGTATTTAACAGAACAGACTAATGGCTGTAGTCGGAACTTTTCATCATTTTGGTTGGCGGCTGTGTTCACTGTTGGCCGCTTGGTGGTGAATCTCGAACCCTTTATTACATTGGATTATATTTTCGTTTCACCAGTCGGTCACCGCGTGCCACTTTCATTCATTGTAAGCTCTTTCAGGGTAAAAAAATCTTTTATAAATAATTCTTTAAATGTGTCTGGACTTGGACCGGGACTTGGACCGGGACCTGGACCTGGACCTGGACCACACCATTTCTTAATTGATCCAGGTATGGTAAAATTTCCTCGTCAGTTCCACATTTTACATTCTCCACATGGAAAAACACTACCACTTTTGCATGTATATTTTCTAGTTCACGGTTGGTTCCAAAATTAG

Coding sequence (CDS)

ATGTGTGTCGTGGATTTGTATTTAACAGAACAGACTAATGGCTGTAGTCGGAACTTTTCATCATTTTGGTTGGCGGCTGTGTTCACTGTTGGCCGCTTGGTGGTGAATCTCGAACCCTTTATTACATTGGATTATATTTTCGTTTCACCAGTCGGTCACCGCGTGCCACTTTCATTCATTGTAAGCTCTTTCAGGGTAAAAAAATCTTTTATAAATAATTCTTTAAATGTGTCTGGACTTGGACCGGGACTTGGACCGGGACCTGGACCTGGACCTGGACCACACCATTTCTTAATTGATCCAGGTATGGTAAAATTTCCTCGTCAGTTCCACATTTTACATTCTCCACATGGAAAAACACTACCACTTTTGCATGTATATTTTCTAGTTCACGGTTGGTTCCAAAATTAG

Protein sequence

MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFIVSSFRVKKSFINNSLNVSGLGPGLGPGPGPGPGPHHFLIDPGMVKFPRQFHILHSPHGKTLPLLHVYFLVHGWFQN*

Homology

[Close]

BLAST of CsGy4G025745.1 vs. NCBI nr
Match: KGN55560.1 (hypothetical protein Csa_011976 [Cucumis sativus])

HSP 1 Score: 288 bits (737), Expect = 2.51e-98
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60
           MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI
Sbjct: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60

Query: 61  VSSFRVKKSFINNSLNVSGLGPGLGPGPGPGPGPHHFLIDPGMVKFPRQFHILHSPHGKT 120
           VSSFRVKKSFINNSLNVSGLGPGLGPGPGPGPGPHHFLIDPGMVKFPRQFHILHSPHGKT
Sbjct: 61  VSSFRVKKSFINNSLNVSGLGPGLGPGPGPGPGPHHFLIDPGMVKFPRQFHILHSPHGKT 120

Query: 121 LPLLHVYFLVHGWFQN 136
           LPLLHVYFLVHGWFQN
Sbjct: 121 LPLLHVYFLVHGWFQN 136

[Close]

BLAST of CsGy4G025745.1 vs. ExPASy TrEMBL
Match: A0A0A0L0V1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G665400 PE=4 SV=1)

HSP 1 Score: 288 bits (737), Expect = 1.21e-98
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60
           MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI
Sbjct: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60

Query: 61  VSSFRVKKSFINNSLNVSGLGPGLGPGPGPGPGPHHFLIDPGMVKFPRQFHILHSPHGKT 120
           VSSFRVKKSFINNSLNVSGLGPGLGPGPGPGPGPHHFLIDPGMVKFPRQFHILHSPHGKT
Sbjct: 61  VSSFRVKKSFINNSLNVSGLGPGLGPGPGPGPGPHHFLIDPGMVKFPRQFHILHSPHGKT 120

Query: 121 LPLLHVYFLVHGWFQN 136
           LPLLHVYFLVHGWFQN
Sbjct: 121 LPLLHVYFLVHGWFQN 136

The following BLAST results are available for this feature:

BLAST of CsGy4G025745.1 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G025745.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55560.1	2.51e-98	100.00	hypothetical protein Csa_011976 [Cucumis sativus]	[more]

BLAST of CsGy4G025745.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0V1	1.21e-98	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G665400 PE=4 SV=1	[more]

BLAST of CsGy4G025745.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy4G025745	CsGy4G025745	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G025745.1.exon1	CsGy4G025745.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy4G025745.1	cds.CsGy4G025745.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy4G025745.1	CsGy4G025745.1-protein	polypeptide