CsGy4G014510.2 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G014510.2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	ctenidin-1-like
Location	Gy14Chr4: 19312089 .. 19312388 (-)
Sequence length	300
RNA-Seq Expression	CsGy4G014510.2
Synteny	CsGy4G014510.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGATGCTGCATTTATTATTATTCCGGTAGTTTTTCTTTCAATTTGTGTAGTTTTCGCGGTGCTGAGTTTACTTTGCCGGTGGACTGGTGGTGGCAGTTCTACCGGAGATGGTGCTCATTTCGGAGGCGCTGATGGCCCAGGTGGAGGAGACGATGGTGGAGAAGACGGTGGTGGAGGTGGTGGCTATGATGGTGGAGGTGGCGGTTATGATGGCGGAGGTGGCAGTGGTGGAGGCGGCGGTGGGGGAGGAGATGGTGGAGGTGGAGGCGGAGGTGGGGGAGGTGGCGGAGGGTAG

mRNA sequence

ATGGTCGATGCTGCATTTATTATTATTCCGGTAGTTTTTCTTTCAATTTGTGTAGTTTTCGCGGTGCTGAGTTTACTTTGCCGGTGGACTGGTGGTGGCAGTTCTACCGGAGATGGTGCTCATTTCGGAGGCGCTGATGGCCCAGGTGGAGGAGACGATGGTGGAGAAGACGGTGGTGGAGGTGGTGGCTATGATGGTGGAGGTGGCGGTTATGATGGCGGAGGTGGCAGTGGTGGAGGCGGCGGTGGGGGAGGAGATGGTGGAGGTGGAGGCGGAGGTGGGGGAGGTGGCGGAGGGTAG

Coding sequence (CDS)

ATGGTCGATGCTGCATTTATTATTATTCCGGTAGTTTTTCTTTCAATTTGTGTAGTTTTCGCGGTGCTGAGTTTACTTTGCCGGTGGACTGGTGGTGGCAGTTCTACCGGAGATGGTGCTCATTTCGGAGGCGCTGATGGCCCAGGTGGAGGAGACGATGGTGGAGAAGACGGTGGTGGAGGTGGTGGCTATGATGGTGGAGGTGGCGGTTATGATGGCGGAGGTGGCAGTGGTGGAGGCGGCGGTGGGGGAGGAGATGGTGGAGGTGGAGGCGGAGGTGGGGGAGGTGGCGGAGGGTAG

Protein sequence

MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGGGGGYDGGGGGYDGGGGSGGGGGGGGDGGGGGGGGGGGGG*

Homology

[Close]

BLAST of CsGy4G014510.2 vs. NCBI nr
Match: KGN54297.1 (hypothetical protein Csa_018030 [Cucumis sativus])

HSP 1 Score: 119 bits (298), Expect = 1.45e-32
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG 60
          MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG
Sbjct: 1  MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG 60

Query: 61 GGGYDGGGGGYDGGGGSGGGGGGGGD 86
          GGGYDGGGGGYDGGGGSGGGGGGGGD
Sbjct: 61 GGGYDGGGGGYDGGGGSGGGGGGGGD 86

[Close]

BLAST of CsGy4G014510.2 vs. NCBI nr
Match: XP_011654372.1 (glycine-rich protein DOT1 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 3.16e-20
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 20  FAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGGGGGYDGGGGGYDGGGGSGG 79
           FAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGGGGGYDGGGGGYDGGGGSGG
Sbjct: 88  FAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGGGGGYDGGGGGYDGGGGSGG 147

Query: 80  GGGGGGD 86
           GGGGGGD
Sbjct: 148 GGGGGGD 154

[Close]

BLAST of CsGy4G014510.2 vs. NCBI nr
Match: KAG6581831.1 (hypothetical protein SDJN03_21833, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 3.47e-12
Identity = 37/45 (82.22%), Postives = 40/45 (88.89%), Query Frame = 0


Query: 1  MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGA 45
          MVD AFIIIPVVFLSICVVF VLSLLCR T GG+++G GAHFGGA
Sbjct: 1  MVDPAFIIIPVVFLSICVVFTVLSLLCRGTAGGTTSGGGAHFGGA 45

[Close]

BLAST of CsGy4G014510.2 vs. NCBI nr
Match: XP_008450046.1 (PREDICTED: ctenidin-1-like [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 3.36e-10
Identity = 48/57 (84.21%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 17  CVVFAVLSLLCRWTGGGSSTGDGAHFGGADGP-GGGDDGGEDGGGGGGYDGGGGGYD 72
           C VFAVLSLLCRWTGGGSST DGA  GGA+G  GGGDDGGEDGGGG  YDGGGGGYD
Sbjct: 74  CGVFAVLSLLCRWTGGGSSTEDGAFSGGANGDLGGGDDGGEDGGGG--YDGGGGGYD 128

[Close]

BLAST of CsGy4G014510.2 vs. NCBI nr
Match: XP_022151509.1 (glycine-rich protein DOT1-like [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 9.73e-09
Identity = 50/73 (68.49%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 1  MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGA-DGPGGGDDGGEDGG 60
          MVDAAFIIIPVVF S+C+VF VLSLLC  + GG ++G GA FGG  D  GGG D  + GG
Sbjct: 1  MVDAAFIIIPVVFFSVCIVFTVLSLLCGLSVGGGTSGGGADFGGGGDHAGGGHDLEDGGG 60

Query: 61 GGGGYDGGGGGYD 72
          GGGGYDGGGGG D
Sbjct: 61 GGGGYDGGGGGGD 73

[Close]

BLAST of CsGy4G014510.2 vs. ExPASy TrEMBL
Match: A0A0A0L128 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297470 PE=4 SV=1)

HSP 1 Score: 119 bits (298), Expect = 7.04e-33
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG 60
          MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG
Sbjct: 1  MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGADGPGGGDDGGEDGGG 60

Query: 61 GGGYDGGGGGYDGGGGSGGGGGGGGD 86
          GGGYDGGGGGYDGGGGSGGGGGGGGD
Sbjct: 61 GGGYDGGGGGYDGGGGSGGGGGGGGD 86

[Close]

BLAST of CsGy4G014510.2 vs. ExPASy TrEMBL
Match: A0A1S3BPC8 (ctenidin-1-like OS=Cucumis melo OX=3656 GN=LOC103491755 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.63e-10
Identity = 48/57 (84.21%), Postives = 49/57 (85.96%), Query Frame = 0


Query: 17  CVVFAVLSLLCRWTGGGSSTGDGAHFGGADGP-GGGDDGGEDGGGGGGYDGGGGGYD 72
           C VFAVLSLLCRWTGGGSST DGA  GGA+G  GGGDDGGEDGGGG  YDGGGGGYD
Sbjct: 74  CGVFAVLSLLCRWTGGGSSTEDGAFSGGANGDLGGGDDGGEDGGGG--YDGGGGGYD 128

[Close]

BLAST of CsGy4G014510.2 vs. ExPASy TrEMBL
Match: A0A6J1DDA5 (glycine-rich protein DOT1-like OS=Momordica charantia OX=3673 GN=LOC111019434 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.71e-09
Identity = 50/73 (68.49%), Postives = 56/73 (76.71%), Query Frame = 0


Query: 1  MVDAAFIIIPVVFLSICVVFAVLSLLCRWTGGGSSTGDGAHFGGA-DGPGGGDDGGEDGG 60
          MVDAAFIIIPVVF S+C+VF VLSLLC  + GG ++G GA FGG  D  GGG D  + GG
Sbjct: 1  MVDAAFIIIPVVFFSVCIVFTVLSLLCGLSVGGGTSGGGADFGGGGDHAGGGHDLEDGGG 60

Query: 61 GGGGYDGGGGGYD 72
          GGGGYDGGGGG D
Sbjct: 61 GGGGYDGGGGGGD 73

The following BLAST results are available for this feature:

BLAST of CsGy4G014510.2 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G014510.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54297.1	1.45e-32	100.00	hypothetical protein Csa_018030 [Cucumis sativus]	[more]
XP_011654372.1	3.16e-20	100.00	glycine-rich protein DOT1 [Cucumis sativus]	[more]
KAG6581831.1	3.47e-12	82.22	hypothetical protein SDJN03_21833, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_008450046.1	3.36e-10	84.21	PREDICTED: ctenidin-1-like [Cucumis melo]	[more]
XP_022151509.1	9.73e-09	68.49	glycine-rich protein DOT1-like [Momordica charantia]	[more]

BLAST of CsGy4G014510.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L128	7.04e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G297470 PE=4 SV=1	[more]
A0A1S3BPC8	1.63e-10	84.21	ctenidin-1-like OS=Cucumis melo OX=3656 GN=LOC103491755 PE=4 SV=1	[more]
A0A6J1DDA5	4.71e-09	68.49	glycine-rich protein DOT1-like OS=Momordica charantia OX=3673 GN=LOC111019434 PE...	[more]

BLAST of CsGy4G014510.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..99

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy4G014510	CsGy4G014510	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G014510.2.exon1	CsGy4G014510.2.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy4G014510.2	cds.CsGy4G014510.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy4G014510.2	CsGy4G014510.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane