CsGy4G007570.2 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G007570.2
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	60S ribosomal protein L10-like
Location	Gy14Chr4: 5664912 .. 5667585 (+)
Sequence length	1442
RNA-Seq Expression	CsGy4G007570.2
Synteny	CsGy4G007570.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTGAAATGAATTAGGTTGGGATATCAGCGTTTGTTCAAGCAGGCAATTTCTTTGACAAATTTAACCATTGAAAAAGGGTATTTGGCCCAACTTCTTCGTCAAAATCTACTATAAAAAGGGTTACATCCGCAACAGATCGTGAATCTCGTCGCGCCGCCGCCACTTCCACAGCTCATCTCCCCATCGCCCCTTGGTGGTACGAAAGCTTCCTTTATCTTTCTCCCTTTGTTTTGCAGCCCTTATTTCGTTCATAAATTTGTTTTATTATTGTTATTATTCTTTTTTGCTTTTTAAATTCATTTACCCGAAAACTAGCCATTGTTAGGGTTAATGTTGCCTGCGGGAAATCATAGTTTAGTTCTCATATAAAACAAAGAAAAATCTCATGAATTGGATTGAGCTATAATGATTAACGAAGATGAAGATGTTTGTCTAAAAGATGAATCAAACGACTTATTCTAAGTGAAAATGAAAAGGGGTTTCTATGGTAGCATTTTTTTGGCTTCTATTTCATAGATTGAAGGGAGGACCGTGAAGAATGAAATTGACAGATTTAGTGCAATCCATTACTGCGCAGATTTGTACTGCCGGTGGTCATATTCACTTGAACATGATGTTTGCCTTACTCATCTGAGTCTATTCCCAACACAATAGTAGACTTGAAAGCTTAATGTTTTATATGAAAATTTTGGCTTTAGTTATGGTAGGATTATGCTTTCGATTTGTCCTGAATCTGTTCATGTATTCCCCTTGACTTTAACGTGGGGATTTGAATGTTGGATCAGGGAATTATGTTAAGACATTAAAGTTTGGCTAGTGAGTTGACTAAATTGTGAGTTTCGTGCTATATGAATCCACTTAGCGTCATTAAAATCTATAATTATTTCCAACAACTTTTACATGGTTGATTCTGGGTCATAAGATTATGGACGAATAGAAGATGATGACTGAAGCAGGTACTTATGATAATCGGGCTTATCTTACTGTTCTCATGGTGCAGCTAATTGTAGTAGTGTGCCGAGTTTCAAGGATATGTCTGTATGATTTACAAGACTGCCGTCTGATTCATTCTCTGTTCATTATGTTTAATGGCCAAGAAATAGATATACCCCTTTCTGTACAAGCCCTATTGGTTATAACTTTAATGACCAAACTATAAGTTGGGCCACCTGTTGAATATTAGTTGATTTTAAGTTAAATCGAGATTTATATCTCTCAAGCTGAATTTCCTGTTCATCAACTGTTTTAAGTTATGAGGTTGAACGAGCAGCATTTTGATGTCACAAGAAAAGGGAAATAGGCTAGGTTTTGACAACAGGGAGAGAGAGAGTCGTGAAATTTGGGAGCAATTTCAATTAGTCATCTAGTTTTGTTTTTTTTCATATGAACTTTTGTGTCATATTATATATTTTTTCTACAACCATGCAGGTCAAATTCATTACACTCATAATGGGGAGAAGACCTGCTAGGTGTTACAGGCAGATTAAAAACAAGCCATACCCGAAGTCACGATTTTGTCGGGGTGTCCCTGATCCTAAGATCAGGATCTATGATGTTGGAATGAAGAGGAAAGGAGTTGATGAATTCCCATTCTGTGTCCATCTCGTGAGTTGGGAGAAAGAAAATGTGTCCAGTGAGGCTTTGGAAGCAGCTAGGATTGCTTGCAATAAGTATATGACCAAGTTTGCTGGGAAGGATGCATTCCATTTGAGGGTTCGGGTTCACCCCTTCCATGTTCTTCGGATTAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAGAGGTGCATTTGGCAAACCACAAGGAACCTGTGCGAGGGTGGACATTGGTCAGGTTCTCCTTTCAGTTCGCTGCAAGGACAACAATGGACAGAATGCACAGGAGGCTCTCCGACGAGCTAAGTTCAAGTTTCCCGGTCGTCAGAAGATCATTGTTAGCAGGAAGTGGGGCTTCACGAAATTCAGCCGAGCTGATTATCTGAAGTACAAGGCAGAGAACAAGATTCTTCCAGATGGTGTTAACGCTAAACTTCTTGGATGCCATGGGCCTCTCGCAAACCGTCAGCCTGGAAGAGCTTTTCTATCTCAAAATGCCTAGATTCATTTTGTTGTGTTTTATTGTTCTCTTTATTTGGAATCATTGTTGACATTATTACCTTGGTTGTTTAAACTCTTGTGAAACAAAGCAGAGATTCCTTTTCTATACTATTTTGATCTTTCATCCAAGTAAATCGTTGTCTTCTTTTGAAACTTCTCCAATGATTAGACATTTAGTTGGGGCCAGGTATGTTGATTGTTTTCTAAATTTCTTTTTACTGGGATACTGCTGGAAGTTAGAGATGGATATCATAGCTCACAAAAATTCATTGATAAGAACAATGCGGTTTGACACCTAAATATTTTTCAGTGAGATTAGTCAAAGGGCCTGTGATTTGAAAGAAACTTATTGAAACGAAAATAGGTTAAAAGTCACAAATCGATTCAACCAAACTCATTGACAGTTCATCAATTCTTCAACGAAATTGAGTCTATGAGCTGATTAGAGGTTGGTTTGGCTTGCCTACACAATAGAAAAGATCAACAGTTTTGCTGGATTTAATTGTCCACATGGTTGTTTTTGGACGGAATTAAACTTTCACTTTAAAACTAATTTACTTG

mRNA sequence

GTGTGAAATGAATTAGGTTGGGATATCAGCGTTTGTTCAAGCAGGCAATTTCTTTGACAAATTTAACCATTGAAAAAGGGTATTTGGCCCAACTTCTTCGTCAAAATCTACTATAAAAAGGGTTACATCCGCAACAGATCGTGAATCTCGTCGCGCCGCCGCCACTTCCACAGCTCATCTCCCCATCGCCCCTTGGTGGTCAAATTCATTACACTCATAATGGGGAGAAGACCTGCTAGGTGTTACAGGCAGATTAAAAACAAGCCATACCCGAAGTCACGATTTTGTCGGGGTGTCCCTGATCCTAAGATCAGGATCTATGATGTTGGAATGAAGAGGAAAGGAGTTGATGAATTCCCATTCTGTGTCCATCTCGTGAGTTGGGAGAAAGAAAATGTGTCCAGTGAGGCTTTGGAAGCAGCTAGGATTGCTTGCAATAAGTATATGACCAAGTTTGCTGGGAAGGATGCATTCCATTTGAGGGTTCGGGTTCACCCCTTCCATGTTCTTCGGATTAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAGAGGTGCATTTGGCAAACCACAAGGAACCTGTGCGAGGGTGGACATTGGTCAGGTTCTCCTTTCAGTTCGCTGCAAGGACAACAATGGACAGAATGCACAGGAGGCTCTCCGACGAGCTAAGTTCAAGTTTCCCGGTCGTCAGAAGATCATTGTTAGCAGGAAGTGGGGCTTCACGAAATTCAGCCGAGCTGATTATCTGAAGTACAAGGCAGAGAACAAGATTCTTCCAGATGGTGTTAACGCTAAACTTCTTGGATGCCATGGGCCTCTCGCAAACCGTCAGCCTGGAAGAGCTTTTCTATCTCAAAATGCCTAGATTCATTTTGTTGTGTTTTATTGTTCTCTTTATTTGGAATCATTGTTGACATTATTACCTTGGTTGTTTAAACTCTTGTGAAACAAAGCAGAGATTCCTTTTCTATACTATTTTGATCTTTCATCCAAGTAAATCGTTGTCTTCTTTTGAAACTTCTCCAATGATTAGACATTTAGTTGGGGCCAGGTATGTTGATTGTTTTCTAAATTTCTTTTTACTGGGATACTGCTGGAAGTTAGAGATGGATATCATAGCTCACAAAAATTCATTGATAAGAACAATGCGGTTTGACACCTAAATATTTTTCAGTGAGATTAGTCAAAGGGCCTGTGATTTGAAAGAAACTTATTGAAACGAAAATAGGTTAAAAGTCACAAATCGATTCAACCAAACTCATTGACAGTTCATCAATTCTTCAACGAAATTGAGTCTATGAGCTGATTAGAGGTTGGTTTGGCTTGCCTACACAATAGAAAAGATCAACAGTTTTGCTGGATTTAATTGTCCACATGGTTGTTTTTGGACGGAATTAAACTTTCACTTTAAAACTAATTTACTTG

Coding sequence (CDS)

ATGGGGAGAAGACCTGCTAGGTGTTACAGGCAGATTAAAAACAAGCCATACCCGAAGTCACGATTTTGTCGGGGTGTCCCTGATCCTAAGATCAGGATCTATGATGTTGGAATGAAGAGGAAAGGAGTTGATGAATTCCCATTCTGTGTCCATCTCGTGAGTTGGGAGAAAGAAAATGTGTCCAGTGAGGCTTTGGAAGCAGCTAGGATTGCTTGCAATAAGTATATGACCAAGTTTGCTGGGAAGGATGCATTCCATTTGAGGGTTCGGGTTCACCCCTTCCATGTTCTTCGGATTAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAGAGGTGCATTTGGCAAACCACAAGGAACCTGTGCGAGGGTGGACATTGGTCAGGTTCTCCTTTCAGTTCGCTGCAAGGACAACAATGGACAGAATGCACAGGAGGCTCTCCGACGAGCTAAGTTCAAGTTTCCCGGTCGTCAGAAGATCATTGTTAGCAGGAAGTGGGGCTTCACGAAATTCAGCCGAGCTGATTATCTGAAGTACAAGGCAGAGAACAAGATTCTTCCAGATGGTGTTAACGCTAAACTTCTTGGATGCCATGGGCCTCTCGCAAACCGTCAGCCTGGAAGAGCTTTTCTATCTCAAAATGCCTAG

Protein sequence

MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA*

Homology

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BLAST of CsGy4G007570.2 vs. ExPASy Swiss-Prot
Match: Q9SPB3 (60S ribosomal protein L10 OS=Vitis riparia OX=96939 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 5.2e-119
Identity = 198/217 (91.24%), Postives = 211/217 (97.24%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTK+AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           KPQGTCARV IGQVLLSVRCKD N  +AQEALRRAKFKFP RQKIIVSRKWGFTKF+R D
Sbjct: 121 KPQGTCARVSIGQVLLSVRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLS 218
           Y+K+K++N+ILPDGVNAKLLGCHGPLANRQPG+AF++
Sbjct: 181 YIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAFIN 217

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BLAST of CsGy4G007570.2 vs. ExPASy Swiss-Prot
Match: P93847 (60S ribosomal protein L10 OS=Solanum melongena OX=4111 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 6.8e-119
Identity = 204/219 (93.15%), Postives = 209/219 (95.43%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTK AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           KPQG CARV IGQVLLSVRCKD N  +AQEALRRAKFKFPGRQKIIVSRKWGFTKFSR D
Sbjct: 121 KPQGVCARVAIGQVLLSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQN 220
           YLKYK+EN+I+PDGVNAKLLG HGPLA RQPGRAFLS +
Sbjct: 181 YLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFLSSS 219

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BLAST of CsGy4G007570.2 vs. ExPASy Swiss-Prot
Match: Q9M5M7 (60S ribosomal protein L10 OS=Euphorbia esula OX=3993 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 2.6e-118
Identity = 201/216 (93.06%), Postives = 208/216 (96.30%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           KPQG CARV IGQVLLSVRCKDNN  NAQEALRRAKFKFPGRQKIIVSRKWGFTK +RAD
Sbjct: 121 KPQGVCARVAIGQVLLSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 217
           Y + K+EN+ILPDGVNAKLLGCHG LANR+PGRAF+
Sbjct: 181 YPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAFI 216

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BLAST of CsGy4G007570.2 vs. ExPASy Swiss-Prot
Match: Q08770 (60S ribosomal protein L10-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10B PE=2 SV=2)

HSP 1 Score: 410.2 bits (1053), Expect = 1.5e-113
Identity = 194/220 (88.18%), Postives = 203/220 (92.27%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMKRKGVDEFP+CVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           K  GTCARV IGQVLLSVRCKD +G +AQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA 221
           Y K + E +I+PDGVNAK L CHGPLANRQPG AFLS  A
Sbjct: 181 YTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLSAGA 220

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BLAST of CsGy4G007570.2 vs. ExPASy Swiss-Prot
Match: Q93VT9 (60S ribosomal protein L10-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10A PE=1 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 2.1e-112
Identity = 191/216 (88.43%), Postives = 201/216 (93.06%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           K  GTCARV IGQVLLSVRCKD +G +AQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 217
           + K + E +++PDGVNAK L CHGPLANRQPG AFL
Sbjct: 181 FTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFL 216

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BLAST of CsGy4G007570.2 vs. NCBI nr
Match: XP_004137249.1 (60S ribosomal protein L10 [Cucumis sativus] >KAE8649248.1 hypothetical protein Csa_015270 [Cucumis sativus])

HSP 1 Score: 458 bits (1178), Expect = 8.37e-163
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA 220
           YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA
Sbjct: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA 220

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BLAST of CsGy4G007570.2 vs. NCBI nr
Match: XP_008451785.1 (PREDICTED: 60S ribosomal protein L10-like [Cucumis melo] >TYK16331.1 60S ribosomal protein L10-like [Cucumis melo var. makuwa])

HSP 1 Score: 454 bits (1169), Expect = 1.97e-161
Identity = 218/220 (99.09%), Postives = 219/220 (99.55%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA 220
           YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQ A
Sbjct: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 220

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BLAST of CsGy4G007570.2 vs. NCBI nr
Match: XP_038906131.1 (60S ribosomal protein L10-like [Benincasa hispida])

HSP 1 Score: 453 bits (1166), Expect = 5.66e-161
Identity = 217/220 (98.64%), Postives = 219/220 (99.55%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           KPQGTCARVDIGQVLLSVRC+DNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD
Sbjct: 121 KPQGTCARVDIGQVLLSVRCRDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA 220
           YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQ A
Sbjct: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 220

[Close]

BLAST of CsGy4G007570.2 vs. NCBI nr
Match: XP_022931333.1 (60S ribosomal protein L10-like [Cucurbita moschata] >XP_022985026.1 60S ribosomal protein L10-like [Cucurbita maxima] >XP_023553543.1 60S ribosomal protein L10-like [Cucurbita pepo subsp. pepo] >KAG6577053.1 60S ribosomal protein L10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 451 bits (1161), Expect = 3.28e-160
Identity = 217/220 (98.64%), Postives = 218/220 (99.09%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           KP GTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRA+
Sbjct: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA 220
           YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQ A
Sbjct: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 220

[Close]

BLAST of CsGy4G007570.2 vs. NCBI nr
Match: XP_022942137.1 (60S ribosomal protein L10-like isoform X2 [Cucurbita moschata] >XP_022942138.1 60S ribosomal protein L10-like isoform X2 [Cucurbita moschata] >XP_023526268.1 60S ribosomal protein L10-like [Cucurbita pepo subsp. pepo] >XP_023526277.1 60S ribosomal protein L10-like [Cucurbita pepo subsp. pepo] >KAG6600485.1 60S ribosomal protein L10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 450 bits (1158), Expect = 9.39e-160
Identity = 217/220 (98.64%), Postives = 218/220 (99.09%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           KPQGTCARV IGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD
Sbjct: 121 KPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA 220
           YLK+KAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQ A
Sbjct: 181 YLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQAA 220

[Close]

BLAST of CsGy4G007570.2 vs. ExPASy TrEMBL
Match: A0A5D3CWP6 (60S ribosomal protein L10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001130 PE=3 SV=1)

HSP 1 Score: 454 bits (1169), Expect = 9.56e-162
Identity = 218/220 (99.09%), Postives = 219/220 (99.55%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA 220
           YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQ A
Sbjct: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 220

[Close]

BLAST of CsGy4G007570.2 vs. ExPASy TrEMBL
Match: A0A1S3BT36 (60S ribosomal protein L10-like OS=Cucumis melo OX=3656 GN=LOC103492967 PE=3 SV=1)

HSP 1 Score: 454 bits (1169), Expect = 9.56e-162
Identity = 218/220 (99.09%), Postives = 219/220 (99.55%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD
Sbjct: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA 220
           YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQ A
Sbjct: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 220

[Close]

BLAST of CsGy4G007570.2 vs. ExPASy TrEMBL
Match: A0A6J1J6Y1 (60S ribosomal protein L10-like OS=Cucurbita maxima OX=3661 GN=LOC111483117 PE=3 SV=1)

HSP 1 Score: 451 bits (1161), Expect = 1.59e-160
Identity = 217/220 (98.64%), Postives = 218/220 (99.09%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           KP GTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRA+
Sbjct: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA 220
           YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQ A
Sbjct: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 220

[Close]

BLAST of CsGy4G007570.2 vs. ExPASy TrEMBL
Match: A0A6J1EY90 (60S ribosomal protein L10-like OS=Cucurbita moschata OX=3662 GN=LOC111437559 PE=3 SV=1)

HSP 1 Score: 451 bits (1161), Expect = 1.59e-160
Identity = 217/220 (98.64%), Postives = 218/220 (99.09%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           KP GTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRA+
Sbjct: 121 KPLGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAE 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA 220
           YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQ A
Sbjct: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQTA 220

[Close]

BLAST of CsGy4G007570.2 vs. ExPASy TrEMBL
Match: A0A6J1FU16 (60S ribosomal protein L10-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111447292 PE=3 SV=1)

HSP 1 Score: 450 bits (1158), Expect = 4.55e-160
Identity = 217/220 (98.64%), Postives = 218/220 (99.09%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           KPQGTCARV IGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD
Sbjct: 121 KPQGTCARVAIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA 220
           YLK+KAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQ A
Sbjct: 181 YLKFKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQAA 220

[Close]

BLAST of CsGy4G007570.2 vs. TAIR 10
Match: AT1G26910.1 (Ribosomal protein L16p/L10e family protein )

HSP 1 Score: 410.2 bits (1053), Expect = 1.0e-114
Identity = 194/220 (88.18%), Postives = 203/220 (92.27%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMKRKGVDEFP+CVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           K  GTCARV IGQVLLSVRCKD +G +AQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLSQNA 221
           Y K + E +I+PDGVNAK L CHGPLANRQPG AFLS  A
Sbjct: 181 YTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLSAGA 220

[Close]

BLAST of CsGy4G007570.2 vs. TAIR 10
Match: AT1G14320.1 (Ribosomal protein L16p/L10e family protein )

HSP 1 Score: 406.4 bits (1043), Expect = 1.5e-113
Identity = 191/216 (88.43%), Postives = 201/216 (93.06%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           K  GTCARV IGQVLLSVRCKD +G +AQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 217
           + K + E +++PDGVNAK L CHGPLANRQPG AFL
Sbjct: 181 FTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFL 216

[Close]

BLAST of CsGy4G007570.2 vs. TAIR 10
Match: AT1G66580.1 (senescence associated gene 24 )

HSP 1 Score: 404.8 bits (1039), Expect = 4.4e-113
Identity = 192/217 (88.48%), Postives = 202/217 (93.09%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
           K  GTCARV IGQVLLSVRCKDN+G +AQEALRRAKFKFPGRQKIIVSRKWGFTKF+RA+
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAE 180

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFLS 218
           Y K +A  +I+PDGVNAK L  HGPLANRQPG AF+S
Sbjct: 181 YTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGSAFIS 217

[Close]

BLAST of CsGy4G007570.2 vs. TAIR 10
Match: AT1G14320.2 (Ribosomal protein L16p/L10e family protein )

HSP 1 Score: 276.2 bits (705), Expect = 2.3e-74
Identity = 140/216 (64.81%), Postives = 149/216 (68.98%), Query Frame = 0


Query: 1   MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
           MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 61  SSEALEAARIACNKYMTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
           SSEALEAARIACNKYM                                            
Sbjct: 61  SSEALEAARIACNKYM-------------------------------------------- 120

Query: 121 KPQGTCARVDIGQVLLSVRCKDNNGQNAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRAD 180
                        VLLSVRCKD +G +AQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD
Sbjct: 121 -------------VLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 159

Query: 181 YLKYKAENKILPDGVNAKLLGCHGPLANRQPGRAFL 217
           + K + E +++PDGVNAK L CHGPLANRQPG AFL
Sbjct: 181 FTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFL 159

The following BLAST results are available for this feature:

BLAST of CsGy4G007570.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SPB3	5.2e-119	91.24	60S ribosomal protein L10 OS=Vitis riparia OX=96939 GN=RPL10 PE=2 SV=1	[more]
P93847	6.8e-119	93.15	60S ribosomal protein L10 OS=Solanum melongena OX=4111 GN=RPL10 PE=2 SV=1	[more]
Q9M5M7	2.6e-118	93.06	60S ribosomal protein L10 OS=Euphorbia esula OX=3993 GN=RPL10 PE=2 SV=1	[more]
Q08770	1.5e-113	88.18	60S ribosomal protein L10-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10B PE=2 SV=2	[more]
Q93VT9	2.1e-112	88.43	60S ribosomal protein L10-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10A PE=1 SV=1	[more]

BLAST of CsGy4G007570.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137249.1	8.37e-163	100.00	60S ribosomal protein L10 [Cucumis sativus] >KAE8649248.1 hypothetical protein C...	[more]
XP_008451785.1	1.97e-161	99.09	PREDICTED: 60S ribosomal protein L10-like [Cucumis melo] >TYK16331.1 60S ribosom...	[more]
XP_038906131.1	5.66e-161	98.64	60S ribosomal protein L10-like [Benincasa hispida]	[more]
XP_022931333.1	3.28e-160	98.64	60S ribosomal protein L10-like [Cucurbita moschata] >XP_022985026.1 60S ribosoma...	[more]
XP_022942137.1	9.39e-160	98.64	60S ribosomal protein L10-like isoform X2 [Cucurbita moschata] >XP_022942138.1 6...	[more]

BLAST of CsGy4G007570.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CWP6	9.56e-162	99.09	60S ribosomal protein L10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3BT36	9.56e-162	99.09	60S ribosomal protein L10-like OS=Cucumis melo OX=3656 GN=LOC103492967 PE=3 SV=1	[more]
A0A6J1J6Y1	1.59e-160	98.64	60S ribosomal protein L10-like OS=Cucurbita maxima OX=3661 GN=LOC111483117 PE=3 ...	[more]
A0A6J1EY90	1.59e-160	98.64	60S ribosomal protein L10-like OS=Cucurbita moschata OX=3662 GN=LOC111437559 PE=...	[more]
A0A6J1FU16	4.55e-160	98.64	60S ribosomal protein L10-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of CsGy4G007570.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26910.1	1.0e-114	88.18	Ribosomal protein L16p/L10e family protein	[more]
AT1G14320.1	1.5e-113	88.43	Ribosomal protein L16p/L10e family protein	[more]
AT1G66580.1	4.4e-113	88.48	senescence associated gene 24	[more]
AT1G14320.2	2.3e-74	64.81	Ribosomal protein L16p/L10e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001197	Ribosomal protein L10e	PIRSF	PIRSF005590	RPL10a_RPL10e	coord: 1..182 e-value: 6.2E-95 score: 313.7
IPR001197	Ribosomal protein L10e	TIGRFAM	TIGR00279	TIGR00279	coord: 1..174 e-value: 7.8E-78 score: 258.0
IPR001197	Ribosomal protein L10e	PANTHER	PTHR11726	60S RIBOSOMAL PROTEIN L10	coord: 1..217
IPR036920	Ribosomal protein L10e/L16 superfamily	GENE3D	3.90.1170.10	Ribosomal protein L10e/L16	coord: 1..218 e-value: 9.1E-117 score: 390.3
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 4..173
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 12..166 e-value: 1.4E-36 score: 125.4
IPR016180	Ribosomal protein L10e/L16	CDD	cd01433	Ribosomal_L16_L10e	coord: 41..166 e-value: 4.07043E-45 score: 144.171
None	No IPR available	PANTHER	PTHR11726:SF42	60S RIBOSOMAL PROTEIN L10-LIKE	coord: 1..217
IPR018255	Ribosomal protein L10e, conserved site	PROSITE	PS01257	RIBOSOMAL_L10E	coord: 108..129

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy4G007570	CsGy4G007570	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G007570.2.utr5p1	CsGy4G007570.2.utr5p1	five_prime_UTR
CsGy4G007570.2.utr5p2	CsGy4G007570.2.utr5p2	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G007570.2.exon1	CsGy4G007570.2.exon1	exon
CsGy4G007570.2.exon2	CsGy4G007570.2.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy4G007570.2	cds.CsGy4G007570.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G007570.2.utr3p1	CsGy4G007570.2.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy4G007570.2	CsGy4G007570.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0000027	ribosomal large subunit assembly
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome