CsGy4G007530.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G007530.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	VQ motif-containing protein 1-like
Location	Gy14Chr4: 5608187 .. 5608501 (+)
Sequence length	315
RNA-Seq Expression	CsGy4G007530.1
Synteny	CsGy4G007530.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAATTAAAGAAAGAAAAATAAATATTCTGCATAAAAGAAGTTCTCAGTTTCCCAAATGGAAGCACCTCATTCAACTAGGGTTGTGATTATTGACACCAAGTACGTGCAAACGGATGCCAAGAGCTTCAAGACAGTGGTGCAAAAGCTGACAGGCAAAGATTCGGTGGTGACAGTGGCTGAGGAAACCCGACGACAAACTGGTAGTGCCCGAAACTCGAGTCTTTTGAGAGATTCATCGTTCAAAGAGTTTCAAAGGGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGAAATGAATAGTAC

mRNA sequence

GAAAATTAAAGAAAGAAAAATAAATATTCTGCATAAAAGAAGTTCTCAGTTTCCCAAATGGAAGCACCTCATTCAACTAGGGTTGTGATTATTGACACCAAGTACGTGCAAACGGATGCCAAGAGCTTCAAGACAGTGGTGCAAAAGCTGACAGGCAAAGATTCGGTGGTGACAGTGGCTGAGGAAACCCGACGACAAACTGGTAGTGCCCGAAACTCGAGTCTTTTGAGAGATTCATCGTTCAAAGAGTTTCAAAGGGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGAAATGAATAGTAC

Coding sequence (CDS)

ATGGAAGCACCTCATTCAACTAGGGTTGTGATTATTGACACCAAGTACGTGCAAACGGATGCCAAGAGCTTCAAGACAGTGGTGCAAAAGCTGACAGGCAAAGATTCGGTGGTGACAGTGGCTGAGGAAACCCGACGACAAACTGGTAGTGCCCGAAACTCGAGTCTTTTGAGAGATTCATCGTTCAAAGAGTTTCAAAGGGTGCTGAGAGAGATGCCAAGAATTGATGAGCTTTATTCTGATTGA

Protein sequence

MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDSSFKEFQRVLREMPRIDELYSD*

Homology

[Close]

BLAST of CsGy4G007530.1 vs. ExPASy Swiss-Prot
Match: Q8VYI5 (VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-07
Identity = 35/92 (38.04%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 8   RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVT--------------------VAEETRRQ 67
           +VV I+T+YV+TDA+SFKTVVQ+LTGK+++V                     + E+TR+ 
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 68  TGSARNSSLLRDSSFKEFQRVLREMPRIDELY 80
            G        R  +  EF R+ +EMP ++ELY
Sbjct: 73  HGGGGGGG--RMGTTTEFDRLFKEMPHMEELY 102

[Close]

BLAST of CsGy4G007530.1 vs. ExPASy Swiss-Prot
Match: Q1G3U8 (VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.3e-06
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVA------------EETRRQTGSARNSS 67
          +VV I+T+YVQTDA+SFKT+VQ+LTGK++VV               + ++R  G  + + 
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVADGPYEFSGQGYGGKDSSQRFCGVGKEAE 70

Query: 68 LLRDSSFKEFQRVLREMPRIDELYS 81
            R     EF    REMP + ELY+
Sbjct: 71 --RGVETTEFDSFFREMPPVGELYN 93

[Close]

BLAST of CsGy4G007530.1 vs. NCBI nr
Match: KGN53544.1 (hypothetical protein Csa_014778 [Cucumis sativus])

HSP 1 Score: 155 bits (391), Expect = 2.71e-47
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60
          MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS
Sbjct: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of CsGy4G007530.1 vs. NCBI nr
Match: KAA0063001.1 (VQ motif-containing protein 1-like [Cucumis melo var. makuwa] >TYK16346.1 VQ motif-containing protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 146 bits (368), Expect = 8.77e-44
Identity = 77/81 (95.06%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60
          MEA HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVV V EE RRQTGSARNSSLLRDS
Sbjct: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of CsGy4G007530.1 vs. NCBI nr
Match: XP_038889427.1 (VQ motif-containing protein 1-like [Benincasa hispida])

HSP 1 Score: 131 bits (329), Expect = 7.17e-38
Identity = 71/81 (87.65%), Postives = 71/81 (87.65%), Query Frame = 0


Query: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60
          MEA HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSV   AEE  R TG  RNS LLRDS
Sbjct: 1  MEAAHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSV---AEEENRHTGGTRNSGLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 78

[Close]

BLAST of CsGy4G007530.1 vs. NCBI nr
Match: KAG6577059.1 (VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015070.1 VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108 bits (270), Expect = 5.89e-29
Identity = 63/74 (85.14%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 3  APHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDSSF 62
          A +STRVVIIDTKYVQTDAKSFKTVVQKLTGKD V   AEE R   G ARNSSLLRDSSF
Sbjct: 2  AAYSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDPV---AEENRHGDG-ARNSSLLRDSSF 61

Query: 63 KEFQRVLREMPRID 76
          KEFQRVLREMPRID
Sbjct: 62 KEFQRVLREMPRID 71

[Close]

BLAST of CsGy4G007530.1 vs. NCBI nr
Match: XP_022142787.1 (VQ motif-containing protein 10-like [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 3.03e-23
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 2  EAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDSS 61
          EAP STRVVIIDTKYV TDAKSFKTVVQKLTGKD      E+ R   G + +SSL RDSS
Sbjct: 5  EAP-STRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAAAEEDRRSGGGGSGSSSLTRDSS 64

Query: 62 FKEFQRVLREMPR 74
          FKEFQRVLREM +
Sbjct: 65 FKEFQRVLREMAK 76

[Close]

BLAST of CsGy4G007530.1 vs. ExPASy TrEMBL
Match: A0A0A0KXJ0 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=1)

HSP 1 Score: 155 bits (391), Expect = 1.31e-47
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60
          MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS
Sbjct: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of CsGy4G007530.1 vs. ExPASy TrEMBL
Match: A0A5A7VBD1 (VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001280 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 4.25e-44
Identity = 77/81 (95.06%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MEAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDS 60
          MEA HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVV V EE RRQTGSARNSSLLRDS
Sbjct: 1  MEATHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVAVGEEIRRQTGSARNSSLLRDS 60

Query: 61 SFKEFQRVLREMPRIDELYSD 81
          SFKEFQRVLREMPRIDELYSD
Sbjct: 61 SFKEFQRVLREMPRIDELYSD 81

[Close]

BLAST of CsGy4G007530.1 vs. ExPASy TrEMBL
Match: A0A6J1CNV7 (VQ motif-containing protein 10-like OS=Momordica charantia OX=3673 GN=LOC111012826 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.47e-23
Identity = 53/73 (72.60%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 2  EAPHSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDSS 61
          EAP STRVVIIDTKYV TDAKSFKTVVQKLTGKD      E+ R   G + +SSL RDSS
Sbjct: 5  EAP-STRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAAAAEEDRRSGGGGSGSSSLTRDSS 64

Query: 62 FKEFQRVLREMPR 74
          FKEFQRVLREM +
Sbjct: 65 FKEFQRVLREMAK 76

[Close]

BLAST of CsGy4G007530.1 vs. ExPASy TrEMBL
Match: A0A6J1FVF7 (VQ motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447218 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.59e-20
Identity = 48/71 (67.61%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 5  HSTRVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVAEETRRQTGSARNSSLLRDSSFKE 64
          HSTRVVIIDTKYV TDAKSFKTVVQKLTGKD  V   EE R+ +G   +  ++ DSSFK+
Sbjct: 7  HSTRVVIIDTKYVHTDAKSFKTVVQKLTGKDPAV---EENRQTSGGWSSGLVITDSSFKK 66

Query: 65 FQRVLREMPRI 75
          FQ  LREMP I
Sbjct: 67 FQTELREMPTI 74

[Close]

BLAST of CsGy4G007530.1 vs. ExPASy TrEMBL
Match: A0A0L9UJH2 (VQ domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g031100 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 5.82e-18
Identity = 43/76 (56.58%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVT--VAEETRRQTGSARNSSLLRDSSFKEF 67
          +VVII+T+YV+TDA SFK+VVQKLTGKDS  +   A+  R   G    S L+RD SFKEF
Sbjct: 12 KVVIINTQYVETDATSFKSVVQKLTGKDSDTSGPKAQRNRHDKGGTERSFLMRDLSFKEF 71

Query: 68 QRVLREMPRIDELYSD 81
           R+LREMP I++L+++
Sbjct: 72 DRLLREMPPINDLWAE 87

[Close]

BLAST of CsGy4G007530.1 vs. TAIR 10
Match: AT1G78410.1 (VQ motif-containing protein )

HSP 1 Score: 57.0 bits (136), Expect = 8.3e-09
Identity = 35/92 (38.04%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 8   RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVT--------------------VAEETRRQ 67
           +VV I+T+YV+TDA+SFKTVVQ+LTGK+++V                     + E+TR+ 
Sbjct: 13  KVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYDGGSKIGEDTRQL 72

Query: 68  TGSARNSSLLRDSSFKEFQRVLREMPRIDELY 80
            G        R  +  EF R+ +EMP ++ELY
Sbjct: 73  HGGGGGGG--RMGTTTEFDRLFKEMPHMEELY 102

[Close]

BLAST of CsGy4G007530.1 vs. TAIR 10
Match: AT1G17147.1 (VQ motif-containing protein )

HSP 1 Score: 53.5 bits (127), Expect = 9.1e-08
Identity = 34/85 (40.00%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 8  RVVIIDTKYVQTDAKSFKTVVQKLTGKDSVVTVA------------EETRRQTGSARNSS 67
          +VV I+T+YVQTDA+SFKT+VQ+LTGK++VV               + ++R  G  + + 
Sbjct: 11 KVVFINTQYVQTDARSFKTIVQELTGKNAVVADGPYEFSGQGYGGKDSSQRFCGVGKEAE 70

Query: 68 LLRDSSFKEFQRVLREMPRIDELYS 81
            R     EF    REMP + ELY+
Sbjct: 71 --RGVETTEFDSFFREMPPVGELYN 93

The following BLAST results are available for this feature:

BLAST of CsGy4G007530.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VYI5	1.2e-07	38.04	VQ motif-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=VQ10 PE=1 SV=1	[more]
Q1G3U8	1.3e-06	40.00	VQ motif-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=VQ1 PE=1 SV=1	[more]

BLAST of CsGy4G007530.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53544.1	2.71e-47	100.00	hypothetical protein Csa_014778 [Cucumis sativus]	[more]
KAA0063001.1	8.77e-44	95.06	VQ motif-containing protein 1-like [Cucumis melo var. makuwa] >TYK16346.1 VQ mot...	[more]
XP_038889427.1	7.17e-38	87.65	VQ motif-containing protein 1-like [Benincasa hispida]	[more]
KAG6577059.1	5.89e-29	85.14	VQ motif-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia] >...	[more]
XP_022142787.1	3.03e-23	72.60	VQ motif-containing protein 10-like [Momordica charantia]	[more]

BLAST of CsGy4G007530.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXJ0	1.31e-47	100.00	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G075740 PE=4 SV=...	[more]
A0A5A7VBD1	4.25e-44	95.06	VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1CNV7	1.47e-23	72.60	VQ motif-containing protein 10-like OS=Momordica charantia OX=3673 GN=LOC1110128...	[more]
A0A6J1FVF7	1.59e-20	67.61	VQ motif-containing protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111447218 PE=4...	[more]
A0A0L9UJH2	5.82e-18	56.58	VQ domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan05g0311...	[more]

BLAST of CsGy4G007530.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78410.1	8.3e-09	38.04	VQ motif-containing protein	[more]
AT1G17147.1	9.1e-08	40.00	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 11..36 e-value: 1.9E-11 score: 43.2
None	No IPR available	PANTHER	PTHR34777:SF1	VQ MOTIF-CONTAINING PROTEIN 10	coord: 5..80
IPR039608	VQ motif-containing protein 1/10	PANTHER	PTHR34777	VQ MOTIF-CONTAINING PROTEIN 10	coord: 5..80

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy4G007530	CsGy4G007530	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G007530.1.utr5p1	CsGy4G007530.1.utr5p1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G007530.1.exon1	CsGy4G007530.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy4G007530.1	cds.CsGy4G007530.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy4G007530.1.utr3p1	CsGy4G007530.1.utr3p1	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy4G007530.1	CsGy4G007530.1-protein	polypeptide